PDB Chemical Component MK8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MK8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
CA |
1.525 |
1.507 |
| C |
OXT |
1.430 |
1.342 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| O |
C |
1.230 |
1.208 |
| CA |
N |
1.469 |
1.469 |
| CA |
CB |
1.540 |
1.529 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CD |
CG |
1.529 |
1.529 |
| CD |
HD |
1.100 |
1.090 |
| CD |
HDA |
1.100 |
1.090 |
| CE |
CD |
1.520 |
1.530 |
| CE |
HE |
1.100 |
1.090 |
| CE |
HEA |
1.100 |
1.091 |
| CE |
HEB |
1.100 |
1.089 |
| CG |
CB |
1.534 |
1.530 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| CB1 |
CA |
1.529 |
1.530 |
| CB1 |
HB1 |
1.100 |
1.090 |
| CB1 |
HB1A |
1.100 |
1.090 |
| CB1 |
HB1B |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MK8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
OXT |
119.4 |
120.0 |
| O |
C |
CA |
121.2 |
120.0 |
| C |
CA |
N |
107.3 |
109.5 |
| C |
CA |
CB |
110.5 |
109.5 |
| O |
C |
OXT |
119.4 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| H |
N |
H2 |
109.4 |
111.0 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| CA |
CB |
HB |
108.6 |
109.5 |
| CA |
CB |
HBA |
108.6 |
109.5 |
| HB |
CB |
HBA |
110.3 |
109.5 |
| CG |
CB |
HB |
108.6 |
109.5 |
| CG |
CB |
HBA |
108.6 |
109.4 |
| CG |
CD |
HD |
109.2 |
109.5 |
| CG |
CD |
HDA |
109.2 |
109.5 |
| CE |
CD |
CG |
110.2 |
109.5 |
| CD |
CG |
HG |
108.1 |
109.5 |
| CD |
CG |
HGA |
108.1 |
109.5 |
| HD |
CD |
HDA |
109.7 |
109.4 |
| CE |
CD |
HD |
109.2 |
109.5 |
| CE |
CD |
HDA |
109.2 |
109.4 |
| HE |
CE |
HEA |
109.5 |
109.4 |
| HE |
CE |
HEB |
109.5 |
109.5 |
| HEA |
CE |
HEB |
109.5 |
109.5 |
| HG |
CG |
HGA |
110.8 |
109.5 |
| HB1 |
CB1 |
HB1A |
109.4 |
109.5 |
| HB1 |
CB1 |
HB1B |
109.4 |
109.5 |
| HB1A |
CB1 |
HB1B |
109.5 |
109.4 |
Torsion Angles for MK8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
OXT |
180.0 |
179.7 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| C |
CA |
N |
H |
180.0 |
296.1 |
| C |
CA |
N |
H2 |
300.0 |
60.0 |
| C |
CA |
CB |
HB |
185.9 |
305.0 |
| C |
CA |
CB |
HBA |
305.9 |
65.0 |
| O |
C |
OXT |
CA |
180.0 |
180.3 |
| OXT |
C |
CA |
N |
297.4 |
35.0 |
| OXT |
C |
CA |
CB |
55.4 |
155.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| CA |
C |
O |
OXT |
180.0 |
180.3 |
| O |
C |
CA |
N |
117.5 |
214.7 |
| O |
C |
CA |
CB |
235.5 |
334.7 |
| O |
C |
OXT |
HXT |
0.0 |
0.2 |
| N |
CA |
C |
OXT |
297.4 |
35.0 |
| C |
CA |
N |
CB |
119.4 |
120.0 |
| H |
N |
CA |
H2 |
240.1 |
236.1 |
| CB |
CA |
C |
OXT |
55.4 |
155.0 |
| C |
CA |
CB |
N |
242.6 |
240.0 |
| CB |
CA |
N |
H |
60.7 |
176.1 |
| CB |
CA |
N |
H2 |
180.6 |
300.0 |
| HB |
CB |
CA |
HBA |
240.0 |
239.9 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| CA |
CB |
HB |
HBA |
118.9 |
120.1 |
| CG |
CB |
HB |
HBA |
241.1 |
240.0 |
| CA |
CB |
HBA |
HB |
241.1 |
240.0 |
| CG |
CB |
HBA |
HB |
118.9 |
120.0 |
| CD |
CG |
CB |
HB |
178.4 |
60.0 |
| CD |
CG |
CB |
HBA |
58.4 |
300.0 |
| HD |
CD |
CG |
HDA |
240.0 |
120.0 |
| CE |
CD |
CG |
HD |
240.0 |
120.0 |
| CE |
CD |
CG |
HDA |
120.0 |
240.0 |
| HG |
CG |
CD |
HGA |
240.0 |
120.1 |
| CG |
CD |
HD |
HDA |
119.7 |
240.0 |
| CE |
CD |
HD |
CG |
120.6 |
240.0 |
| HD |
CD |
CG |
HG |
57.0 |
300.0 |
| HD |
CD |
CG |
HGA |
177.0 |
180.0 |
| CE |
CD |
HD |
HDA |
240.3 |
119.9 |
| CG |
CD |
HDA |
HD |
240.3 |
120.0 |
| CE |
CD |
HDA |
CG |
239.4 |
120.0 |
| HDA |
CD |
CG |
HG |
176.9 |
180.0 |
| HDA |
CD |
CG |
HGA |
297.0 |
60.0 |
| CE |
CD |
HDA |
HD |
119.7 |
240.0 |
| CG |
CD |
CE |
HD |
120.0 |
239.9 |
| CG |
CD |
CE |
HDA |
240.0 |
120.0 |
| CE |
CD |
CG |
HG |
297.0 |
60.1 |
| CE |
CD |
CG |
HGA |
57.0 |
300.0 |
| HD |
CD |
CE |
HDA |
120.0 |
240.1 |
| HE |
CE |
CD |
CG |
180.0 |
180.0 |
| HE |
CE |
CD |
HD |
60.0 |
300.1 |
| HE |
CE |
CD |
HDA |
300.0 |
60.0 |
| HEA |
CE |
HE |
HEB |
120.0 |
120.0 |
| HEA |
CE |
CD |
CG |
300.0 |
299.9 |
| HEA |
CE |
CD |
HD |
180.0 |
60.0 |
| HEA |
CE |
CD |
HDA |
60.0 |
179.9 |
| HE |
CE |
HEA |
HEB |
240.0 |
240.0 |
| HEB |
CE |
CD |
CG |
60.0 |
60.0 |
| HEB |
CE |
CD |
HD |
300.0 |
180.0 |
| HEB |
CE |
CD |
HDA |
180.0 |
300.0 |
| HE |
CE |
HEB |
HEA |
120.0 |
120.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
240.0 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| HG |
CG |
CB |
HB |
58.4 |
180.0 |
| HG |
CG |
CB |
HBA |
298.4 |
60.0 |
| HG |
CG |
CD |
HD |
57.0 |
300.0 |
| HG |
CG |
CD |
HDA |
176.9 |
180.0 |
| CD |
CG |
HG |
HGA |
118.3 |
239.9 |
| HGA |
CG |
CB |
HB |
298.4 |
300.0 |
| HGA |
CG |
CB |
HBA |
178.4 |
180.0 |
| HGA |
CG |
CD |
HD |
177.0 |
180.0 |
| HGA |
CG |
CD |
HDA |
297.0 |
60.0 |
| CD |
CG |
HGA |
HG |
241.7 |
120.0 |
| CB1 |
CA |
C |
OXT |
177.1 |
275.0 |
| CB1 |
CA |
N |
H |
299.9 |
56.1 |
| CB1 |
CA |
N |
H2 |
59.8 |
180.0 |
| CB1 |
CA |
CB |
HB |
64.4 |
185.0 |
| CB1 |
CA |
CB |
HBA |
184.4 |
305.0 |
| HB1A |
CB1 |
HB1 |
HB1B |
120.0 |
120.0 |
| HB1 |
CB1 |
HB1A |
HB1B |
240.0 |
240.0 |
| HB1 |
CB1 |
HB1B |
HB1A |
120.0 |
120.0 |