PDB Chemical Component MIY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MIY

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O8 C21 1.230  
C21 N2 1.373  
C21 C2 1.524  
N2 HN21 1.000  
N2 HN22 1.000  
C2 C1 1.483  
C2 C3 1.393  
C1 O1 1.231  
C1 C18 1.530  
C3 O2 1.349  
C3 C4 1.574  
O2 HO2 0.950  
C4 N1 1.562  
C4 C5 1.573  
C4 H4 1.100  
N1 C20 1.486  
N1 C19 1.500  
C20 H201 1.100  
C20 H202 1.100  
C20 H203 1.100  
C19 H191 1.100  
C19 H192 1.100  
C19 H193 1.100  
C5 C18 1.531  
C5 C6 1.569  
C5 H5 1.100  
C18 O7 1.445  
C18 C17 1.521  
O7 HO7 0.950  
C17 O6 1.338  
C17 C16 1.363  
O6 HO6 0.950  
C16 C7 1.507  
C16 C15 1.487  
C7 C6 1.559  
C7 C8 1.553  
C7 H7 1.100  
C6 H61 1.100  
C6 H62 1.100  
C15 O5 1.233  
C15 C14 1.473  
C14 C9 1.376  
C14 C13 1.403  
C9 C8 1.545  
C9 C10 1.383  
C8 H81 1.100  
C8 H82 1.100  
C13 O4 1.390  
C13 C12 1.397  
O4 HO4 0.950  
C12 C11 1.376  
C12 H12 1.080  
C11 C10 1.402  
C11 H11 1.080  
C10 N7 1.370  
N7 CN7 1.479  
N7 C71 1.469  
CN7 HN71 1.100  
CN7 HN72 1.100  
CN7 HN73 1.100  
C71 H711 1.100  
C71 H712 1.100  
C71 H713 1.100  

Bond Angles for MIY

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O8 C21 N2 118.7  
O8 C21 C2 119.4  
N2 C21 C2 121.8  
C21 N2 HN21 125.2  
C21 N2 HN22 109.5  
C21 C2 C1 115.3  
C21 C2 C3 127.5  
HN21 N2 HN22 125.3  
C1 C2 C3 117.2  
C2 C1 O1 120.3  
C2 C1 C18 119.2  
C2 C3 O2 118.5  
C2 C3 C4 123.9  
O1 C1 C18 120.5  
C1 C18 C5 111.3  
C1 C18 O7 103.8  
C1 C18 C17 117.2  
O2 C3 C4 117.5  
C3 O2 HO2 109.5  
C3 C4 N1 117.1  
C3 C4 C5 112.7  
C3 C4 H4 105.2  
N1 C4 C5 118.5  
N1 C4 H4 96.4  
C4 N1 C20 115.1  
C4 N1 C19 119.6  
C5 C4 H4 103.1  
C4 C5 C18 109.1  
C4 C5 C6 118.9  
C4 C5 H5 102.9  
C20 N1 C19 110.1  
N1 C20 H201 109.5  
N1 C20 H202 109.4  
N1 C20 H203 109.5  
N1 C19 H191 109.5  
N1 C19 H192 109.5  
N1 C19 H193 109.5  
H201 C20 H202 109.5  
H201 C20 H203 109.4  
H202 C20 H203 109.5  
H191 C19 H192 109.5  
H191 C19 H193 109.4  
H192 C19 H193 109.5  
C18 C5 C6 109.3  
C18 C5 H5 113.8  
C5 C18 O7 112.7  
C5 C18 C17 105.8  
C6 C5 H5 102.7  
C5 C6 C7 116.4  
C5 C6 H61 105.6  
C5 C6 H62 107.2  
O7 C18 C17 106.1  
C18 O7 HO7 109.5  
C18 C17 O6 112.5  
C18 C17 C16 126.2  
O6 C17 C16 121.2  
C17 O6 HO6 109.5  
C17 C16 C7 121.9  
C17 C16 C15 119.7  
C7 C16 C15 118.4  
C16 C7 C6 111.8  
C16 C7 C8 104.6  
C16 C7 H7 113.3  
C16 C15 O5 125.5  
C16 C15 C14 120.1  
C6 C7 C8 114.9  
C6 C7 H7 102.6  
C7 C6 H61 105.6  
C7 C6 H62 107.2  
C8 C7 H7 110.1  
C7 C8 C9 112.2  
C7 C8 H81 108.0  
C7 C8 H82 108.6  
H61 C6 H62 115.1  
O5 C15 C14 114.3  
C15 C14 C9 117.3  
C15 C14 C13 118.5  
C9 C14 C13 124.1  
C14 C9 C8 120.7  
C14 C9 C10 114.9  
C14 C13 O4 121.0  
C14 C13 C12 119.7  
C8 C9 C10 124.5  
C9 C8 H81 107.9  
C9 C8 H82 108.6  
C9 C10 C11 122.7  
C9 C10 N7 120.8  
H81 C8 H82 111.7  
O4 C13 C12 119.4  
C13 O4 HO4 109.5  
C13 C12 C11 117.3  
C13 C12 H12 121.4  
C11 C12 H12 121.4  
C12 C11 C10 121.4  
C12 C11 H11 119.3  
C10 C11 H11 119.3  
C11 C10 N7 116.4  
C10 N7 CN7 101.7  
C10 N7 C71 106.4  
CN7 N7 C71 110.4  
N7 CN7 HN71 109.5  
N7 CN7 HN72 109.4  
N7 CN7 HN73 109.5  
N7 C71 H711 109.4  
N7 C71 H712 109.5  
N7 C71 H713 109.5  
HN71 CN7 HN72 109.5  
HN71 CN7 HN73 109.5  
HN72 CN7 HN73 109.5  
H711 C71 H712 109.5  
H711 C71 H713 109.4  
H712 C71 H713 109.5  

Torsion Angles for MIY

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N2 C21 O8 C2 176.6  
O8 C21 N2 HN21 181.6  
O8 C21 N2 HN22 1.7  
O8 C21 C2 C1 114.2  
O8 C21 C2 C3 295.9  
O8 C21 N2 C2 183.5  
N2 C21 C2 C1 297.7  
N2 C21 C2 C3 119.4  
HN21 N2 C21 HN22 180.0  
O8 C21 C2 N2 176.5  
C2 C21 N2 HN21 358.2  
C2 C21 N2 HN22 178.2  
C1 C2 C21 C3 178.3  
C21 C2 C1 O1 2.1  
C21 C2 C1 C18 185.3  
C21 C2 C3 O2 11.3  
C21 C2 C3 C4 193.7  
HN21 N2 C21 C2 358.2  
C21 N2 HN21 HN22 180.0  
HN22 N2 C21 C2 178.2  
C21 N2 HN22 HN21 180.0  
C21 C2 C1 C3 181.5  
C1 C2 C3 O2 193.0  
C1 C2 C3 C4 15.4  
O1 C1 C2 C18 176.8  
C2 C1 C18 C5 317.9  
C2 C1 C18 O7 79.4  
C2 C1 C18 C17 196.0  
C21 C2 C3 C1 178.3  
C3 C2 C1 O1 180.6  
C3 C2 C1 C18 3.8  
O2 C3 C2 C4 177.6  
C2 C3 O2 HO2 1.2  
C2 C3 C4 N1 221.5  
C2 C3 C4 C5 4.3  
C2 C3 C4 H4 115.9  
O1 C1 C2 C3 180.6  
C2 C1 O1 C18 183.2  
O1 C1 C18 C5 141.1  
O1 C1 C18 O7 262.6  
O1 C1 C18 C17 19.2  
C18 C1 C2 C3 3.8  
C2 C1 C18 O1 176.8  
C4 C5 C18 C1 59.0  
C1 C18 C5 C6 287.5  
C1 C18 C5 H5 173.3  
C5 C18 C1 O7 238.5  
C5 C18 C1 C17 121.9  
O7 C18 C1 C17 243.4  
C1 C18 O7 HO7 358.8  
C1 C18 C17 O6 262.6  
C1 C18 C17 C16 85.4  
C2 C3 O2 C4 182.3  
O2 C3 C4 N1 43.9  
O2 C3 C4 C5 186.7  
O2 C3 C4 H4 298.3  
C2 C3 C4 O2 177.6  
C4 C3 O2 HO2 179.0  
N1 C4 C3 C5 217.2  
N1 C4 C3 H4 105.6  
C3 C4 N1 C20 153.6  
C3 C4 N1 C19 19.0  
C5 C4 C3 H4 248.4  
C3 C4 C5 C18 318.9  
C3 C4 C5 C6 85.1  
C3 C4 C5 H5 197.8  
HO2 O2 C3 C4 179.0  
C3 C4 N1 C5 140.6  
C3 C4 N1 H4 249.3  
C5 C4 N1 H4 108.7  
N1 C4 C5 C18 101.2  
N1 C4 C5 C6 227.4  
N1 C4 C5 H5 340.0  
C20 N1 C4 C19 134.6  
C4 N1 C20 H201 121.1  
C4 N1 C20 H202 1.1  
C4 N1 C20 H203 241.1  
C4 N1 C19 H191 201.0  
C4 N1 C19 H192 81.0  
C4 N1 C19 H193 321.0  
C1 C18 C5 C4 59.0  
C3 C4 C5 N1 217.7  
C3 C4 C5 H4 112.9  
N1 C4 C5 H4 255.2  
C5 C4 N1 C20 13.0  
C5 C4 N1 C19 238.4  
C18 C5 C4 C6 233.8  
C18 C5 C4 H5 121.2  
C4 C5 C18 O7 302.9  
C4 C5 C18 C17 187.4  
C6 C5 C4 H5 247.4  
C4 C5 C6 C7 178.1  
C4 C5 C6 H61 61.2  
C4 C5 C6 H62 298.1  
C3 C4 H4 N1 120.4  
C3 C4 H4 C5 241.7  
N1 C4 H4 C5 121.3  
H4 C4 N1 C20 264.3  
H4 C4 N1 C19 129.7  
H4 C4 C5 C18 206.0  
H4 C4 C5 C6 332.2  
H4 C4 C5 H5 84.8  
C20 N1 C4 C5 13.0  
C20 N1 C4 H4 264.3  
C4 N1 C20 C19 221.2  
C20 N1 C19 H191 64.3  
C20 N1 C19 H192 304.3  
C20 N1 C19 H193 184.3  
H201 C20 N1 H202 120.0  
H201 C20 N1 H203 240.0  
H202 C20 N1 H203 120.0  
C19 N1 C4 C5 238.4  
C19 N1 C4 H4 129.7  
C4 N1 C19 C20 136.7  
C19 N1 C20 H201 259.9  
C19 N1 C20 H202 139.8  
C19 N1 C20 H203 19.9  
H191 C19 N1 H192 120.0  
H191 C19 N1 H193 240.0  
H192 C19 N1 H193 120.0  
H201 C20 N1 C19 259.9  
N1 C20 H201 H202 240.0  
N1 C20 H201 H203 120.0  
H202 C20 H201 H203 240.0  
H202 C20 N1 C19 139.8  
N1 C20 H202 H201 120.0  
N1 C20 H202 H203 240.0  
H201 C20 H202 H203 120.0  
H203 C20 N1 C19 19.9  
N1 C20 H203 H201 240.0  
N1 C20 H203 H202 120.0  
H201 C20 H203 H202 240.0  
N1 C19 H191 H192 240.0  
N1 C19 H191 H193 120.0  
H192 C19 H191 H193 240.0  
N1 C19 H192 H191 120.0  
N1 C19 H192 H193 240.0  
H191 C19 H192 H193 120.0  
N1 C19 H193 H191 240.0  
N1 C19 H193 H192 120.0  
H191 C19 H193 H192 240.0  
C1 C18 C5 O7 116.1  
C1 C18 C5 C17 231.6  
C18 C5 C4 H4 206.0  
C4 C5 C18 C6 131.5  
C4 C5 C18 H5 245.7  
C6 C5 C18 H5 114.2  
C18 C5 C6 C7 304.1  
C18 C5 C6 H61 187.3  
C18 C5 C6 H62 64.1  
O7 C18 C5 C17 115.6  
C5 C18 O7 HO7 119.3  
C5 C18 C17 O6 137.9  
C5 C18 C17 C16 320.6  
C6 C5 C4 H4 332.2  
C4 C5 C6 C18 233.9  
C4 C5 C6 H5 112.8  
C18 C5 C6 H5 238.8  
C6 C5 C18 O7 171.4  
C6 C5 C18 C17 55.9  
C16 C7 C6 C5 28.2  
C5 C6 C7 C8 147.1  
C5 C6 C7 H7 266.6  
C7 C6 C5 H61 116.8  
C7 C6 C5 H62 240.0  
H61 C6 C5 H62 123.2  
H5 C5 C4 H4 84.8  
C4 C5 H5 C18 117.9  
C4 C5 H5 C6 236.0  
C18 C5 H5 C6 118.0  
H5 C5 C18 O7 57.2  
H5 C5 C18 C17 301.7  
H5 C5 C6 C7 65.3  
H5 C5 C6 H61 308.5  
H5 C5 C6 H62 185.3  
C1 C18 O7 C5 239.5  
C1 C18 O7 C17 124.1  
O7 C18 C5 C6 171.4  
O7 C18 C5 H5 57.2  
C5 C18 O7 C17 244.6  
O7 C18 C17 O6 17.9  
O7 C18 C17 C16 200.7  
C1 C18 C17 C5 124.7  
C1 C18 C17 O7 244.7  
C17 C18 C5 C6 55.9  
C17 C18 C5 H5 301.7  
C5 C18 C17 O7 120.0  
C17 C18 O7 HO7 234.6  
O6 C17 C18 C16 177.3  
C18 C17 O6 HO6 53.0  
C18 C17 C16 C7 13.9  
C18 C17 C16 C15 195.5  
HO7 O7 C18 C17 234.6  
C18 C17 O6 C16 182.6  
O6 C17 C16 C7 196.8  
O6 C17 C16 C15 18.4  
C18 C17 C16 O6 177.1  
C16 C17 O6 HO6 230.4  
C7 C16 C17 C15 178.4  
C17 C16 C7 C6 353.5  
C17 C16 C7 C8 228.6  
C17 C16 C7 H7 108.8  
C17 C16 C15 O5 349.7  
C17 C16 C15 C14 165.3  
HO6 O6 C17 C16 230.4  
C5 C6 C7 C16 28.2  
C17 C16 C7 C15 181.6  
C7 C16 C15 O5 171.3  
C7 C16 C15 C14 346.9  
C6 C7 C16 C8 124.9  
C6 C7 C16 H7 244.7  
C16 C7 C6 H61 145.0  
C16 C7 C6 H62 268.2  
C8 C7 C16 H7 119.9  
C16 C7 C8 C9 303.0  
C16 C7 C8 H81 184.2  
C16 C7 C8 H82 63.0  
C17 C16 C15 C7 178.4  
C15 C16 C7 C6 171.9  
C15 C16 C7 C8 47.1  
C15 C16 C7 H7 287.2  
O5 C15 C16 C14 184.4  
C16 C15 C14 C9 345.9  
C16 C15 C14 C13 167.5  
C7 C6 C5 H5 65.3  
C5 C6 C7 H61 243.2  
C5 C6 C7 H62 120.0  
C6 C7 C16 C15 171.9  
C16 C7 C6 C8 241.1  
C16 C7 C6 H7 121.7  
C8 C7 C6 H7 240.6  
C6 C7 C8 C9 180.1  
C6 C7 C8 H81 61.3  
C6 C7 C8 H82 300.1  
H61 C6 C7 H62 236.8  
C8 C7 C16 C15 47.1  
C16 C7 C8 C6 122.9  
C16 C7 C8 H7 238.0  
C6 C7 C8 H7 115.1  
C8 C7 C6 H61 263.9  
C8 C7 C6 H62 27.1  
C14 C9 C8 C7 36.1  
C7 C8 C9 C10 216.9  
C9 C8 C7 H81 118.8  
C9 C8 C7 H82 240.0  
H81 C8 C7 H82 121.2  
H7 C7 C16 C15 287.2  
C16 C7 H7 C6 239.3  
C16 C7 H7 C8 116.7  
C6 C7 H7 C8 237.3  
H7 C7 C6 H61 23.4  
H7 C7 C6 H62 146.6  
H7 C7 C8 C9 65.0  
H7 C7 C8 H81 306.2  
H7 C7 C8 H82 185.0  
H61 C6 C5 H5 308.5  
C5 C6 H61 C7 123.9  
C5 C6 H61 H62 242.0  
H61 C6 C7 C8 263.9  
H61 C6 C7 H7 23.4  
C7 C6 H61 H62 118.1  
H62 C6 C5 H5 185.3  
C5 C6 H62 C7 234.3  
C5 C6 H62 H61 117.1  
H62 C6 C7 C8 27.1  
H62 C6 C7 H7 146.6  
C7 C6 H62 H61 242.8  
C16 C15 O5 C14 175.8  
O5 C15 C14 C9 161.9  
O5 C15 C14 C13 343.6  
C16 C15 C14 O5 183.9  
C9 C14 C15 C13 178.4  
C15 C14 C9 C8 1.6  
C15 C14 C9 C10 180.9  
C15 C14 C13 O4 357.8  
C15 C14 C13 C12 179.1  
C7 C8 C9 C14 36.1  
C15 C14 C9 C13 181.7  
C9 C14 C13 O4 179.6  
C9 C14 C13 C12 0.9  
C8 C9 C14 C10 180.8  
C14 C9 C8 H81 154.9  
C14 C9 C8 H82 276.1  
C14 C9 C10 C11 0.3  
C14 C9 C10 N7 176.8  
C15 C14 C13 C9 178.2  
C13 C14 C9 C8 179.9  
C13 C14 C9 C10 359.2  
O4 C13 C14 C12 178.7  
C14 C13 O4 HO4 56.9  
C14 C13 C12 C11 359.7  
C14 C13 C12 H12 179.7  
C9 C8 C7 H7 65.0  
C7 C8 C9 H81 241.2  
C7 C8 C9 H82 120.0  
C8 C9 C14 C13 179.9  
C14 C9 C8 C10 179.2  
C8 C9 C10 C11 179.5  
C8 C9 C10 N7 356.0  
H81 C8 C9 H82 238.8  
C10 C9 C14 C13 359.2  
C14 C9 C10 C8 180.8  
C10 C9 C8 H81 335.7  
C10 C9 C8 H82 96.9  
C12 C11 C10 C9 0.2  
C9 C10 C11 H11 180.2  
C11 C10 C9 N7 183.5  
C9 C10 N7 CN7 268.5  
C9 C10 N7 C71 152.9  
H81 C8 C7 H7 306.2  
C7 C8 H81 C9 121.5  
C7 C8 H81 H82 240.7  
H81 C8 C9 C10 335.7  
C9 C8 H81 H82 119.2  
H82 C8 C7 H7 185.0  
C7 C8 H82 C9 237.8  
C7 C8 H82 H81 118.9  
H82 C8 C9 C10 96.9  
C9 C8 H82 H81 241.1  
C14 C13 O4 C12 181.3  
O4 C13 C12 C11 181.0  
O4 C13 C12 H12 0.9  
C14 C13 C12 O4 178.7  
C12 C13 O4 HO4 235.6  
C11 C12 C13 H12 180.0  
C13 C12 C11 C10 359.8  
C13 C12 C11 H11 179.8  
HO4 O4 C13 C12 235.6  
C9 C10 C11 C12 0.2  
C13 C12 C11 H12 180.0  
C10 C11 C12 H11 180.0  
C12 C11 C10 N7 183.5  
C13 C12 H12 C11 180.0  
H12 C12 C11 C10 179.8  
H12 C12 C11 H11 359.8  
C9 C10 C11 N7 176.7  
C10 C11 C12 H12 179.8  
C12 C11 C10 H11 180.0  
C11 C10 N7 CN7 85.2  
C11 C10 N7 C71 329.6  
H11 C11 C12 H12 359.8  
C12 C11 H11 C10 180.0  
H11 C11 C10 N7 3.6  
C9 C10 N7 C11 183.3  
N7 C10 C11 H11 3.6  
CN7 N7 C10 C71 115.6  
C10 N7 CN7 HN71 174.9  
C10 N7 CN7 HN72 55.0  
C10 N7 CN7 HN73 295.0  
C10 N7 C71 H711 212.6  
C10 N7 C71 H712 92.6  
C10 N7 C71 H713 332.6  
C10 N7 CN7 C71 247.3  
CN7 N7 C71 H711 103.0  
CN7 N7 C71 H712 343.0  
CN7 N7 C71 H713 223.0  
HN71 CN7 N7 HN72 120.0  
HN71 CN7 N7 HN73 240.0  
HN72 CN7 N7 HN73 120.0  
C10 N7 C71 CN7 109.6  
C71 N7 CN7 HN71 287.6  
C71 N7 CN7 HN72 167.6  
C71 N7 CN7 HN73 47.6  
H711 C71 N7 H712 120.0  
H711 C71 N7 H713 240.0  
H712 C71 N7 H713 120.0  
HN71 CN7 N7 C71 287.6  
N7 CN7 HN71 HN72 240.0  
N7 CN7 HN71 HN73 120.0  
HN72 CN7 HN71 HN73 240.0  
HN72 CN7 N7 C71 167.6  
N7 CN7 HN72 HN71 120.0  
N7 CN7 HN72 HN73 240.0  
HN71 CN7 HN72 HN73 120.0  
HN73 CN7 N7 C71 47.6  
N7 CN7 HN73 HN71 240.0  
N7 CN7 HN73 HN72 120.0  
HN71 CN7 HN73 HN72 240.0  
N7 C71 H711 H712 240.0  
N7 C71 H711 H713 120.0  
H712 C71 H711 H713 240.0  
N7 C71 H712 H711 120.0  
N7 C71 H712 H713 239.9  
H711 C71 H712 H713 120.0  
N7 C71 H713 H711 240.0  
N7 C71 H713 H712 120.0  
H711 C71 H713 H712 240.0