Atom Nomenclature for MIN

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MIN

Atom Name (V3) Atom Name (V2)
N13 N13
C15 C15
C13 C13
O13 O13
C16 C16
C17 C17
C18 C18
C22 C22
C19 C19
C21 C21
C20 C20
C14 C14
N9 N9
C9 C9
C8 C8
O8 O8
C10 C10
C11 C11
C12 C12
N7 N7
C7 C7
C4 C4
C5 C5
C6 C6
C1 C1
C2 C2
C3 C3
N1 N1
HN3 HN3
H15 H15
H161 H161
H162 H162
H18 H18
H22 H22
H19 H19
H21 H21
H20 H20
H141 H141
H142 H142
H143 H143
H9 H9
H101 H101
H102 H102
H111 H111
H112 H112
H121 H121
H122 H122
HN7 HN7
H71 H71
H72 H72
H4 H4
H51 H51
H52 H52
H61 H61
H62 H62
H1 H1
H21A H21A
H22A H22A
H31 H31
H32 H32
HN11 HN11
HN12 HN12