PDB Chemical Component MIL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MIL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.364 |
1.377 |
| C1 |
C6 |
1.408 |
1.405 |
| C1 |
C1' |
1.496 |
1.483 |
| C2 |
C2A |
1.502 |
1.507 |
| C2 |
N3 |
1.337 |
1.347 |
| C4 |
C5 |
1.451 |
1.464 |
| C4 |
O4 |
1.235 |
1.220 |
| C4 |
N3 |
1.360 |
1.346 |
| C5 |
C6 |
1.358 |
1.390 |
| C5 |
C5A |
1.423 |
1.432 |
| C6 |
H6 |
1.103 |
1.079 |
| C2A |
H2A1 |
1.115 |
1.090 |
| C2A |
H2A2 |
1.115 |
1.090 |
| C2A |
H2A3 |
1.114 |
1.090 |
| C5A |
N5A |
1.127 |
1.136 |
| C1' |
C2' |
1.382 |
1.397 |
| C1' |
C6' |
1.410 |
1.398 |
| C2' |
C3' |
1.384 |
1.380 |
| C2' |
H2' |
1.103 |
1.080 |
| C3' |
N4' |
1.330 |
1.319 |
| C3' |
H3' |
1.103 |
1.080 |
| C5' |
C6' |
1.365 |
1.379 |
| C5' |
N4' |
1.334 |
1.320 |
| C5' |
H5' |
1.103 |
1.080 |
| C6' |
H6' |
1.103 |
1.081 |
| N3 |
HN3 |
1.020 |
0.971 |
Bond Angles for MIL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C6 |
119.2 |
120.3 |
| C2 |
C1 |
C1' |
125.7 |
119.8 |
| C1 |
C2 |
C2A |
129.7 |
119.3 |
| C1 |
C2 |
N3 |
116.5 |
121.6 |
| C6 |
C1 |
C1' |
115.0 |
119.9 |
| C1 |
C6 |
C5 |
121.9 |
118.7 |
| C1 |
C6 |
H6 |
120.9 |
120.6 |
| C1 |
C1' |
C2' |
120.6 |
121.0 |
| C1 |
C1' |
C6' |
120.7 |
120.9 |
| C2A |
C2 |
N3 |
113.8 |
119.2 |
| C2 |
C2A |
H2A1 |
129.6 |
109.5 |
| C2 |
C2A |
H2A2 |
105.1 |
109.4 |
| C2 |
C2A |
H2A3 |
105.2 |
109.5 |
| C2 |
N3 |
C4 |
129.9 |
121.2 |
| C2 |
N3 |
HN3 |
114.0 |
119.3 |
| C5 |
C4 |
O4 |
124.6 |
120.2 |
| C5 |
C4 |
N3 |
112.5 |
119.6 |
| C4 |
C5 |
C6 |
119.9 |
118.5 |
| C4 |
C5 |
C5A |
114.2 |
120.7 |
| O4 |
C4 |
N3 |
122.8 |
120.2 |
| C4 |
N3 |
HN3 |
116.1 |
119.4 |
| C6 |
C5 |
C5A |
126.0 |
120.7 |
| C5 |
C6 |
H6 |
117.2 |
120.7 |
| C5 |
C5A |
N5A |
168.8 |
180.0 |
| H2A1 |
C2A |
H2A2 |
105.2 |
109.5 |
| H2A1 |
C2A |
H2A3 |
105.2 |
109.6 |
| H2A2 |
C2A |
H2A3 |
104.0 |
109.4 |
| C2' |
C1' |
C6' |
118.7 |
118.1 |
| C1' |
C2' |
C3' |
117.4 |
119.1 |
| C1' |
C2' |
H2' |
121.2 |
120.5 |
| C1' |
C6' |
C5' |
117.5 |
119.1 |
| C1' |
C6' |
H6' |
122.8 |
120.4 |
| C3' |
C2' |
H2' |
121.4 |
120.5 |
| C2' |
C3' |
N4' |
125.6 |
120.9 |
| C2' |
C3' |
H3' |
119.4 |
119.5 |
| N4' |
C3' |
H3' |
115.0 |
119.6 |
| C3' |
N4' |
C5' |
115.2 |
122.0 |
| C6' |
C5' |
N4' |
125.6 |
120.9 |
| C6' |
C5' |
H5' |
118.5 |
119.6 |
| C5' |
C6' |
H6' |
119.7 |
120.5 |
| N4' |
C5' |
H5' |
115.9 |
119.6 |
Torsion Angles for MIL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C1 |
C2 |
C1' |
178.4 |
179.9 |
| C2 |
C1 |
C6 |
C5 |
2.2 |
360.0 |
| C2 |
C1 |
C6 |
H6 |
182.3 |
180.0 |
| C2 |
C1 |
C1' |
C2' |
50.7 |
120.0 |
| C2 |
C1 |
C1' |
C6' |
228.1 |
299.6 |
| C2A |
C2 |
C1 |
N3 |
180.8 |
179.7 |
| C1 |
C2 |
C2A |
H2A1 |
180.0 |
180.0 |
| C1 |
C2 |
C2A |
H2A2 |
305.3 |
300.0 |
| C1 |
C2 |
C2A |
H2A3 |
54.7 |
59.9 |
| C1 |
C2 |
N3 |
C4 |
359.9 |
359.4 |
| C1 |
C2 |
N3 |
HN3 |
179.9 |
180.0 |
| C2 |
C1 |
C6 |
C1' |
181.5 |
180.1 |
| C6 |
C1 |
C2 |
C2A |
179.9 |
180.0 |
| C6 |
C1 |
C2 |
N3 |
359.0 |
0.3 |
| C6 |
C1 |
C1' |
C2' |
232.3 |
300.1 |
| C6 |
C1 |
C1' |
C6' |
49.6 |
119.7 |
| C4 |
C5 |
C6 |
C1 |
357.6 |
0.1 |
| C1 |
C6 |
C5 |
C5A |
179.7 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| C2 |
C1 |
C1' |
C6 |
178.4 |
179.9 |
| C1' |
C1 |
C2 |
C2A |
1.5 |
0.0 |
| C1' |
C1 |
C2 |
N3 |
180.7 |
180.3 |
| C1' |
C1 |
C6 |
C5 |
180.8 |
179.9 |
| C1' |
C1 |
C6 |
H6 |
0.8 |
360.0 |
| C2' |
C1' |
C1 |
C6' |
182.6 |
180.4 |
| C1 |
C1' |
C2' |
C3' |
178.8 |
180.0 |
| C1 |
C1' |
C2' |
H2' |
358.9 |
359.8 |
| C1 |
C1' |
C6' |
C5' |
181.4 |
179.8 |
| C1 |
C1' |
C6' |
H6' |
1.4 |
0.3 |
| C2A |
C2 |
C1 |
C6 |
179.9 |
180.0 |
| C2A |
C2 |
C1 |
C1' |
1.5 |
0.0 |
| C1 |
C2 |
C2A |
N3 |
179.2 |
180.3 |
| C2A |
C2 |
N3 |
C4 |
179.2 |
179.7 |
| C2A |
C2 |
N3 |
HN3 |
359.2 |
0.3 |
| H2A1 |
C2A |
C2 |
H2A2 |
234.8 |
240.0 |
| H2A1 |
C2A |
C2 |
H2A3 |
125.3 |
120.1 |
| H2A2 |
C2A |
C2 |
H2A3 |
250.5 |
240.1 |
| N3 |
C2 |
C1 |
C6 |
359.0 |
0.3 |
| N3 |
C2 |
C1 |
C1' |
180.7 |
180.3 |
| C1 |
C2 |
N3 |
C2A |
180.7 |
179.7 |
| N3 |
C2 |
C2A |
H2A1 |
0.9 |
359.8 |
| N3 |
C2 |
C2A |
H2A2 |
126.1 |
119.8 |
| N3 |
C2 |
C2A |
H2A3 |
235.6 |
239.6 |
| C5 |
C4 |
N3 |
C2 |
360.0 |
0.7 |
| O4 |
C4 |
N3 |
C2 |
180.4 |
180.3 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.4 |
| C1 |
C6 |
C5 |
C4 |
357.6 |
0.1 |
| C2 |
N3 |
C4 |
C5 |
360.0 |
0.7 |
| O4 |
C4 |
C5 |
N3 |
179.5 |
180.4 |
| C5 |
C4 |
N3 |
HN3 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C5A |
181.8 |
179.9 |
| C4 |
C5 |
C6 |
H6 |
177.6 |
180.0 |
| C4 |
C5 |
C5A |
N5A |
185.4 |
198.9 |
| C2 |
N3 |
C4 |
O4 |
180.4 |
180.3 |
| C5 |
C4 |
O4 |
N3 |
180.5 |
179.6 |
| O4 |
C4 |
C5 |
C6 |
180.8 |
180.0 |
| O4 |
C4 |
C5 |
C5A |
358.9 |
0.1 |
| O4 |
C4 |
N3 |
HN3 |
0.5 |
359.7 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.6 |
| C5 |
C4 |
N3 |
O4 |
179.5 |
180.4 |
| N3 |
C4 |
C5 |
C6 |
1.3 |
359.6 |
| N3 |
C4 |
C5 |
C5A |
179.4 |
179.7 |
| C5 |
C6 |
C1 |
C1' |
180.8 |
179.9 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
O4 |
180.8 |
180.0 |
| C6 |
C5 |
C4 |
N3 |
1.3 |
359.6 |
| C4 |
C5 |
C6 |
C5A |
177.9 |
180.1 |
| C6 |
C5 |
C5A |
N5A |
3.4 |
19.0 |
| C5A |
C5 |
C4 |
O4 |
358.9 |
0.1 |
| C5A |
C5 |
C4 |
N3 |
179.4 |
179.7 |
| C4 |
C5 |
C5A |
C6 |
182.0 |
179.9 |
| C5A |
C5 |
C6 |
H6 |
359.6 |
359.9 |
| H6 |
C6 |
C1 |
C1' |
0.8 |
360.0 |
| C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C5A |
359.6 |
359.9 |
| H2A1 |
C2A |
C2 |
N3 |
0.9 |
359.8 |
| C2 |
C2A |
H2A1 |
H2A2 |
125.2 |
120.0 |
| C2 |
C2A |
H2A1 |
H2A3 |
234.7 |
239.9 |
| H2A2 |
C2A |
H2A1 |
H2A3 |
109.5 |
119.9 |
| H2A2 |
C2A |
C2 |
N3 |
126.1 |
119.8 |
| C2 |
C2A |
H2A2 |
H2A1 |
220.7 |
240.0 |
| C2 |
C2A |
H2A2 |
H2A3 |
110.3 |
119.9 |
| H2A1 |
C2A |
H2A2 |
H2A3 |
249.6 |
240.0 |
| H2A3 |
C2A |
C2 |
N3 |
235.6 |
239.6 |
| C2 |
C2A |
H2A3 |
H2A1 |
139.4 |
120.1 |
| C2 |
C2A |
H2A3 |
H2A2 |
249.7 |
240.1 |
| H2A1 |
C2A |
H2A3 |
H2A2 |
110.4 |
120.0 |
| C1 |
C1' |
C2' |
C6' |
177.4 |
179.6 |
| C2' |
C1' |
C6' |
C5' |
358.9 |
359.4 |
| C2' |
C1' |
C6' |
H6' |
178.8 |
180.0 |
| C3' |
C2' |
C1' |
H2' |
179.9 |
180.1 |
| C1' |
C2' |
C3' |
N4' |
358.6 |
360.0 |
| C1' |
C2' |
C3' |
H3' |
178.7 |
179.9 |
| C1 |
C1' |
C6' |
C2' |
182.6 |
180.4 |
| C6' |
C1' |
C2' |
C3' |
1.4 |
0.3 |
| C6' |
C1' |
C2' |
H2' |
181.5 |
180.2 |
| C1' |
C6' |
C5' |
N4' |
0.8 |
0.6 |
| C1' |
C6' |
C5' |
H5' |
180.7 |
180.3 |
| C5' |
C6' |
C1' |
H6' |
180.0 |
179.4 |
| C3' |
C2' |
C1' |
C6' |
1.4 |
0.3 |
| C1' |
C2' |
C3' |
H2' |
180.1 |
179.9 |
| N4' |
C3' |
C2' |
H3' |
179.9 |
180.1 |
| C2' |
C3' |
N4' |
C5' |
0.9 |
360.0 |
| H2' |
C2' |
C1' |
C6' |
181.5 |
180.2 |
| C1' |
C2' |
H2' |
C3' |
179.9 |
180.1 |
| H2' |
C2' |
C3' |
N4' |
178.6 |
180.1 |
| H2' |
C2' |
C3' |
H3' |
358.6 |
0.0 |
| N4' |
C3' |
C2' |
H2' |
178.6 |
180.1 |
| C2' |
C3' |
N4' |
H3' |
180.1 |
179.9 |
| C6' |
C5' |
N4' |
C3' |
359.4 |
359.8 |
| C3' |
N4' |
C5' |
H5' |
179.4 |
180.0 |
| H3' |
C3' |
C2' |
H2' |
358.6 |
0.0 |
| C2' |
C3' |
H3' |
N4' |
179.9 |
180.1 |
| H3' |
C3' |
N4' |
C5' |
180.9 |
180.0 |
| C1' |
C6' |
C5' |
H6' |
180.0 |
180.6 |
| C3' |
N4' |
C5' |
C6' |
359.4 |
359.8 |
| N4' |
C5' |
C6' |
H5' |
180.0 |
180.2 |
| C5' |
N4' |
C3' |
H3' |
180.9 |
180.0 |
| C6' |
C5' |
N4' |
H5' |
180.0 |
179.8 |
| N4' |
C5' |
C6' |
H6' |
180.8 |
180.0 |
| C6' |
C5' |
H5' |
N4' |
180.0 |
180.2 |
| H5' |
C5' |
C6' |
H6' |
0.8 |
359.8 |
| C1' |
C6' |
H6' |
C5' |
180.0 |
179.4 |
| H6' |
C6' |
C5' |
N4' |
180.8 |
180.0 |
| H6' |
C6' |
C5' |
H5' |
0.8 |
359.8 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.4 |