PDB Chemical Component MIA

Ideal Model

Chemical Description

Name 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE
Formula C16 H24 N5 O7 P S
Formal charge 0
Molecular weight 461.430 g/mol
Component type RNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 54
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HOP3 HO3'
Bond count 56
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) N-(3-methylbut-2-en-1-yl)-2-(methylsulfanyl)adenosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{R})-5-[6-(3-methylbut-2-enylamino)-2-methylsulfanyl-purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CSc1nc(NCC=C(C)C)c2ncn([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1
SMILES (CACTVS) CSc1nc(NCC=C(C)C)c2ncn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2n1
Stereo SMILES (OpenEye) CC(=CCNc1c2c(nc(n1)SC)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C
InChI descriptor InChI=1S/C16H24N5O7PS/c1-8(2)4-5-17-13-10-14(20-16(19-13)30-3)21(7-18-10)15-12(23)11(22)9(28-15)6-27-29(24,25)26/h4,7,9,11-12,15,22-23H,5-6H2,1-3H3,(H,17,19,20)(H2,24,25,26)/t9-,11-,12-,15-/m1/s1
InChIKey descriptor XBXAAXAANNIENQ-SDBHATRESA-N

Status Information

Last modified 2019-06-13
Created 1999-07-08
Release status REL
Model PDB code 1B23
Processing site RCSB