PDB Chemical Component MIA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MIA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.613 1.610
OP3 HOP3 0.950 0.968
P OP1 1.489 1.479
P OP2 1.488 1.610
P O5' 1.596 1.610
OP2 HOP2 0.950 0.967
O5' C5' 1.440 1.430
C5' C4' 1.514 1.530
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.453 1.437
C4' C3' 1.522 1.542
C4' H4' 1.100 1.090
O4' C1' 1.419 1.444
C3' O3' 1.423 1.429
C3' C2' 1.523 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.415 1.430
C2' C1' 1.526 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.457 1.465
C1' H1' 1.100 1.090
N9 C8 1.376 1.364
N9 C4 1.374 1.372
C8 N7 1.307 1.302
C8 H8 1.080 1.080
N7 C5 1.372 1.356
C5 C6 1.388 1.406
C5 C4 1.387 1.405
C6 N6 1.359 1.383
C6 N1 1.377 1.328
N6 C12 1.556 1.465
N6 HN6 1.000 0.970
N1 C2 1.365 1.328
C2 N3 1.335 1.323
C2 S10 1.757 1.762
N3 C4 1.345 1.329
S10 C11 1.815 1.810
C11 H111 1.100 1.089
C11 H112 1.100 1.090
C11 H113 1.100 1.090
C12 C13 1.546 1.506
C12 H121 1.100 1.090
C12 H122 1.100 1.090
C13 C14 1.390 1.310
C13 H131 1.080 1.080
C14 C15 1.475 1.507
C14 C16 1.538 1.506
C15 H151 1.100 1.090
C15 H152 1.100 1.090
C15 H153 1.100 1.090
C16 H161 1.100 1.090
C16 H162 1.100 1.090
C16 H163 1.100 1.090

Bond Angles for MIA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 114.0
OP3 P OP1 108.0 109.5
OP3 P OP2 107.4 109.5
OP3 P O5' 104.6 109.4
OP1 P OP2 119.6 109.5
OP1 P O5' 108.3 109.5
OP2 P O5' 108.0 109.5
P OP2 HOP2 109.5 114.0
P O5' C5' 120.9 123.0
O5' C5' C4' 110.8 109.5
O5' C5' H5' 109.1 109.5
O5' C5' H5'' 109.2 109.5
C4' C5' H5' 109.1 109.5
C4' C5' H5'' 109.1 109.5
C5' C4' O4' 109.0 109.9
C5' C4' C3' 117.2 109.9
C5' C4' H4' 108.6 109.9
H5' C5' H5'' 109.5 109.4
O4' C4' C3' 104.0 107.3
O4' C4' H4' 109.4 109.9
C4' O4' C1' 109.7 107.0
C3' C4' H4' 108.5 110.0
C4' C3' O3' 114.2 110.5
C4' C3' C2' 102.4 104.2
C4' C3' H3' 108.9 110.5
O4' C1' C2' 107.6 103.5
O4' C1' N9 108.7 110.6
O4' C1' H1' 111.9 110.6
O3' C3' C2' 111.9 110.5
O3' C3' H3' 110.2 110.4
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 108.9 110.6
C3' C2' O2' 114.2 110.9
C3' C2' C1' 101.2 102.1
C3' C2' H2' 109.6 111.0
O2' C2' C1' 110.6 110.9
O2' C2' H2' 111.1 110.8
C2' O2' HO2' 109.5 113.9
C1' C2' H2' 109.6 110.9
C2' C1' N9 107.0 110.6
C2' C1' H1' 110.2 110.6
N9 C1' H1' 111.2 110.7
C1' N9 C8 130.2 126.3
C1' N9 C4 124.0 126.3
C8 N9 C4 105.7 107.5
N9 C8 N7 113.6 109.9
N9 C8 H8 123.2 125.1
N9 C4 C5 105.4 106.0
N9 C4 N3 126.7 134.9
N7 C8 H8 123.2 125.0
C8 N7 C5 104.2 109.4
N7 C5 C6 131.7 134.6
N7 C5 C4 111.0 107.1
C6 C5 C4 117.3 118.3
C5 C6 N6 125.9 120.7
C5 C6 N1 117.1 118.6
C5 C4 N3 128.0 119.1
N6 C6 N1 116.9 120.7
C6 N6 C12 110.3 120.0
C6 N6 HN6 109.3 120.0
C6 N1 C2 119.2 121.1
C12 N6 HN6 109.3 120.0
N6 C12 C13 120.9 109.5
N6 C12 H121 106.5 109.5
N6 C12 H122 106.5 109.5
N1 C2 N3 127.7 122.2
N1 C2 S10 117.0 118.9
N3 C2 S10 115.3 118.9
C2 N3 C4 110.8 120.6
C2 S10 C11 103.9 100.0
S10 C11 H111 109.5 109.5
S10 C11 H112 109.5 109.5
S10 C11 H113 109.5 109.5
H111 C11 H112 109.5 109.5
H111 C11 H113 109.5 109.5
H112 C11 H113 109.4 109.5
C13 C12 H121 106.5 109.5
C13 C12 H122 106.5 109.5
C12 C13 C14 112.1 120.0
C12 C13 H131 124.0 120.0
H121 C12 H122 109.5 109.4
C14 C13 H131 124.0 120.0
C13 C14 C15 128.1 120.0
C13 C14 C16 118.4 120.0
C15 C14 C16 110.6 120.0
C14 C15 H151 109.5 109.5
C14 C15 H152 109.5 109.5
C14 C15 H153 109.5 109.5
C14 C16 H161 109.5 109.5
C14 C16 H162 109.4 109.5
C14 C16 H163 109.4 109.5
H151 C15 H152 109.5 109.5
H151 C15 H153 109.5 109.4
H152 C15 H153 109.5 109.4
H161 C16 H162 109.5 109.4
H161 C16 H163 109.5 109.5
H162 C16 H163 109.5 109.5

Torsion Angles for MIA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 130.2 240.0
OP1 P OP3 O5' 244.8 120.0
OP2 P OP3 O5' 114.6 240.0
OP3 P OP2 HOP2 123.4 60.0
OP3 P O5' C5' 279.0 175.0
HOP3 OP3 P OP1 360.0 300.0
HOP3 OP3 P OP2 229.8 60.0
HOP3 OP3 P O5' 115.2 180.0
OP1 P OP3 HOP3 360.0 300.0
OP3 P OP1 OP2 237.0 120.0
OP3 P OP1 O5' 112.8 240.0
OP2 P OP1 O5' 235.8 120.0
OP1 P OP2 HOP2 0.0 180.0
OP1 P O5' C5' 34.0 55.0
OP2 P OP3 HOP3 229.8 60.0
OP3 P OP2 OP1 123.3 240.0
OP3 P OP2 O5' 247.7 120.0
OP1 P OP2 O5' 124.3 240.0
OP2 P O5' C5' 164.8 295.0
O5' P OP3 HOP3 115.2 180.0
OP3 P O5' OP1 245.0 120.0
OP3 P O5' OP2 114.2 240.0
OP1 P O5' OP2 229.2 120.0
O5' P OP2 HOP2 235.7 300.0
P O5' C5' C4' 164.4 180.0
P O5' C5' H5' 284.5 300.0
P O5' C5' H5'' 44.1 60.0
HOP2 OP2 P O5' 235.7 300.0
C4' C5' O5' H5' 239.8 240.0
C4' C5' O5' H5'' 120.2 120.1
O5' C5' C4' O4' 303.4 66.4
O5' C5' C4' C3' 61.1 184.3
O5' C5' C4' H4' 184.3 305.4
H5' C5' O5' H5'' 240.4 240.0
O5' C5' C4' H5' 120.2 120.0
O5' C5' C4' H5'' 239.8 240.0
H5' C5' C4' H5'' 119.6 120.0
O4' C4' C5' C3' 242.4 242.2
O4' C4' C5' H4' 119.1 121.0
C5' C4' O4' C1' 146.4 145.9
C3' C4' C5' H4' 236.7 238.9
C5' C4' C3' O3' 82.3 119.8
C5' C4' C3' C2' 203.5 238.6
C5' C4' C3' H3' 318.6 357.3
O5' C5' H5' C4' 238.8 240.0
O5' C5' H5' H5'' 119.4 120.0
C4' C5' H5' H5'' 240.6 240.0
H5' C5' C4' O4' 183.3 306.5
H5' C5' C4' C3' 300.9 64.3
H5' C5' C4' H4' 64.2 185.5
O5' C5' H5'' C4' 121.2 120.0
O5' C5' H5'' H5' 240.6 240.0
C4' C5' H5'' H5' 119.4 120.0
H5'' C5' C4' O4' 63.7 186.5
H5'' C5' C4' C3' 181.3 304.3
H5'' C5' C4' H4' 304.6 65.5
O4' C4' C5' H5' 183.3 306.5
O4' C4' C5' H5'' 63.7 186.5
C5' C4' O4' C3' 125.7 119.4
C5' C4' O4' H4' 241.4 239.0
C3' C4' O4' H4' 115.7 119.6
O4' C4' C3' O3' 202.6 239.3
O4' C4' C3' C2' 323.8 358.0
O4' C4' C3' H3' 78.9 116.8
C4' O4' C1' C2' 3.4 319.9
C4' O4' C1' N9 247.8 201.4
C4' O4' C1' H1' 124.6 78.4
C3' C4' C5' H5' 300.9 64.3
C3' C4' C5' H5'' 181.3 304.3
C5' C4' C3' O4' 239.7 240.6
C5' C4' C3' H4' 123.3 121.1
O4' C4' C3' H4' 243.6 240.5
C3' C4' O4' C1' 20.7 26.5
O3' C3' C4' C2' 238.8 241.3
O3' C3' C4' H3' 123.7 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 244.9 241.2
C4' C3' C2' O2' 278.3 220.9
C4' C3' C2' C1' 37.2 339.1
C4' C3' C2' H2' 152.9 97.4
H4' C4' C5' H5' 64.2 185.5
H4' C4' C5' H5'' 304.6 65.5
C5' C4' H4' O4' 118.8 121.0
C5' C4' H4' C3' 231.6 238.9
O4' C4' H4' C3' 112.8 117.9
H4' C4' O4' C1' 265.0 266.9
H4' C4' C3' O3' 318.9 358.8
H4' C4' C3' C2' 80.1 117.5
H4' C4' C3' H3' 195.3 236.3
C1' O4' C4' C3' 20.7 26.5
C1' O4' C4' H4' 265.0 266.9
C3' C2' C1' O4' 334.2 37.0
O2' C2' C1' O4' 95.6 155.2
O4' C1' C2' H2' 218.5 278.7
C2' C1' O4' N9 115.6 118.5
C2' C1' O4' H1' 238.8 241.5
N9 C1' O4' H1' 123.2 123.0
O4' C1' N9 C8 1.3 23.6
O4' C1' N9 C4 177.2 203.3
O3' C3' C4' H4' 318.9 358.8
C4' C3' O3' C2' 115.7 114.8
C4' C3' O3' H3' 237.1 237.5
C2' C3' O3' H3' 121.3 122.7
O3' C3' C2' O2' 41.1 339.6
O3' C3' C2' C1' 160.0 97.8
O3' C3' C2' H2' 275.7 216.0
C2' C3' C4' H4' 80.1 117.5
C4' C3' C2' O3' 237.2 241.3
C4' C3' C2' H3' 115.1 118.7
O4' C1' C2' C3' 334.2 37.0
O3' C3' C2' H3' 237.9 237.4
C2' C3' O3' HO3' 64.3 65.2
O2' C2' C3' C1' 241.1 241.8
O2' C2' C3' H2' 125.5 123.6
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 244.3 241.7
C3' C2' C1' N9 90.9 155.6
C3' C2' C1' H1' 211.9 278.6
H3' C3' C4' H4' 195.3 236.3
C4' C3' H3' O3' 126.0 122.5
C4' C3' H3' C2' 249.1 245.2
O3' C3' H3' C2' 123.1 122.7
H3' C3' O3' HO3' 302.9 302.5
H3' C3' C2' O2' 163.2 102.2
H3' C3' C2' C1' 282.1 220.4
H3' C3' C2' H2' 37.8 338.7
HO3' O3' C3' C2' 64.3 65.2
HO3' O3' C3' H3' 302.9 302.5
O4' C1' C2' O2' 95.6 155.2
O2' C2' C3' H3' 163.2 102.2
C3' C2' O2' C1' 113.4 112.7
C3' C2' O2' H2' 235.4 236.3
C1' C2' O2' H2' 121.9 123.6
O2' C2' C1' N9 212.3 273.7
O2' C2' C1' H1' 333.4 36.8
O4' C1' C2' N9 243.3 241.5
O4' C1' C2' H1' 122.2 118.5
C1' C2' C3' H3' 282.1 220.4
C3' C2' C1' O2' 238.5 241.8
C3' C2' C1' H2' 115.7 118.3
O2' C2' C1' H2' 237.2 236.5
C1' C2' O2' HO2' 66.6 185.9
N9 C1' C2' H1' 238.9 237.0
C2' C1' N9 C8 245.3 269.5
C2' C1' N9 C4 61.3 89.2
H2' C2' C3' H3' 37.8 338.7
C3' C2' H2' O2' 127.2 123.6
C3' C2' H2' C1' 249.7 247.2
O2' C2' H2' C1' 122.5 123.6
H2' C2' O2' HO2' 304.6 62.2
H2' C2' C1' N9 335.1 37.3
H2' C2' C1' H1' 96.2 160.3
HO2' O2' C2' C1' 66.6 185.9
HO2' O2' C2' H2' 304.6 62.2
O4' C1' N9 C2' 116.0 114.1
O4' C1' N9 H1' 236.4 237.0
N9 C1' C2' H2' 335.1 37.3
C2' C1' N9 H1' 120.4 123.0
C8 N9 C1' C4 184.1 180.4
C1' N9 C8 N7 174.5 180.0
C1' N9 C8 H8 354.5 359.9
C1' N9 C4 C5 185.6 179.9
C1' N9 C4 N3 4.9 0.8
O4' C1' H1' C2' 240.3 246.0
O4' C1' H1' N9 121.8 123.0
H1' C1' C2' H2' 96.2 160.3
C2' C1' H1' N9 241.5 237.0
H1' C1' N9 C8 124.9 146.6
H1' C1' N9 C4 300.8 326.2
C8 N9 C1' H1' 124.9 146.6
C1' N9 C8 C4 176.5 179.7
C8 N9 C4 C5 2.4 359.6
C8 N9 C4 N3 181.7 180.5
N7 C8 N9 H8 180.0 180.1
N9 C8 N7 C5 0.6 360.0
C4 N9 C1' H1' 300.8 326.2
C1' N9 C4 C8 183.2 180.3
C4 N9 C8 N7 358.0 0.3
C4 N9 C8 H8 178.0 180.2
N7 C5 C4 N9 357.8 0.4
C6 C5 C4 N9 178.8 180.2
C5 C4 N9 N3 180.7 179.1
C2 N3 C4 N9 182.0 179.6
N7 C8 N9 C4 358.0 0.3
N9 C8 N7 H8 180.0 179.9
C8 N7 C5 C6 179.8 180.0
C8 N7 C5 C4 1.0 359.7
H8 C8 N9 C4 178.0 180.2
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 180.6 180.1
N9 C4 C5 N7 357.8 0.4
C5 N7 C8 H8 180.6 180.1
C6 C5 N7 C4 178.8 180.3
N7 C5 C6 N6 3.1 0.0
N7 C5 C6 N1 181.4 180.0
N7 C5 C4 N3 178.5 179.7
N9 C4 C5 C6 178.8 180.2
N7 C5 C6 C4 181.3 179.7
C6 C5 C4 N3 359.5 359.4
N6 C6 C5 N1 181.6 180.0
C5 C6 N6 C12 161.8 180.0
C5 C6 N6 HN6 281.9 360.0
C5 C6 N1 C2 359.4 0.0
N9 C4 C5 N3 179.3 180.8
N7 C5 C4 C6 179.0 180.2
C4 C5 C6 N6 181.8 180.3
C4 C5 C6 N1 0.1 0.3
C2 N3 C4 C5 1.1 0.6
N6 C6 C5 C4 181.8 180.3
C5 C6 N6 N1 178.4 179.9
N6 C6 N1 C2 177.9 180.0
C12 N6 C6 HN6 239.9 180.0
C6 N6 C12 C13 161.0 180.0
C6 N6 C12 H121 282.6 300.0
C6 N6 C12 H122 39.4 60.0
N1 C6 C5 C4 0.1 0.3
C5 C6 N1 N6 181.5 180.0
N1 C6 N6 C12 343.4 0.1
N1 C6 N6 HN6 103.6 180.0
C6 N1 C2 N3 1.5 0.0
C6 N1 C2 S10 179.9 180.0
C12 N6 C6 N1 343.4 0.1
C6 N6 C12 HN6 120.1 180.0
C13 C12 N6 H121 238.4 240.0
C13 C12 N6 H122 121.6 120.1
N6 C12 C13 C14 197.6 236.0
N6 C12 C13 H131 17.7 56.0
H121 C12 N6 H122 243.2 240.1
HN6 N6 C6 N1 103.6 180.0
C6 N6 HN6 C12 239.3 180.0
HN6 N6 C12 C13 40.8 0.1
HN6 N6 C12 H121 162.4 120.1
HN6 N6 C12 H122 279.2 240.0
N3 C2 N1 S10 181.7 180.0
N1 C2 N3 C4 358.4 359.6
N1 C2 S10 C11 179.5 360.0
N9 C4 N3 C2 182.0 179.6
C5 C4 N3 C2 1.1 0.6
N1 C2 N3 S10 178.4 180.0
N3 C2 S10 C11 358.0 180.0
N1 C2 S10 N3 181.4 180.0
S10 C2 N3 C4 180.0 179.7
C2 S10 C11 H111 180.0 60.0
C2 S10 C11 H112 300.0 180.0
C2 S10 C11 H113 60.0 300.0
N9 C4 N3 C5 180.9 179.0
C4 N3 C2 S10 180.0 179.7
H111 C11 S10 H112 240.0 240.0
H111 C11 S10 H113 120.0 120.0
H112 C11 S10 H113 240.0 240.0
S10 C11 H111 H112 120.0 120.0
S10 C11 H111 H113 240.0 240.0
H112 C11 H111 H113 119.9 120.0
S10 C11 H112 H111 240.0 240.0
S10 C11 H112 H113 120.0 120.0
H111 C11 H112 H113 240.0 240.0
S10 C11 H113 H111 120.0 120.0
S10 C11 H113 H112 240.0 240.0
H111 C11 H113 H112 120.0 120.0
C13 C12 N6 HN6 40.8 0.1
N6 C12 C13 H121 121.6 120.0
N6 C12 C13 H122 238.4 240.0
H121 C12 C13 H122 116.8 120.0
C14 C13 C12 H131 180.0 180.0
C12 C13 C14 C15 155.0 353.8
C12 C13 C14 C16 356.2 173.7
H121 C12 N6 HN6 162.4 120.1
N6 C12 H121 C13 229.7 240.0
N6 C12 H121 H122 114.8 120.0
C13 C12 H121 H122 245.2 240.0
H121 C12 C13 C14 76.0 116.0
H121 C12 C13 H131 256.1 296.0
H122 C12 N6 HN6 279.2 240.0
N6 C12 H122 C13 130.4 120.0
N6 C12 H122 H121 245.2 240.0
C13 C12 H122 H121 114.8 120.0
H122 C12 C13 C14 319.2 356.0
H122 C12 C13 H131 139.3 176.0
C14 C13 C12 H121 76.0 116.0
C14 C13 C12 H122 319.2 356.0
C12 C13 C14 H131 180.0 180.0
C15 C14 C13 C16 158.8 180.0
C13 C14 C15 H151 180.0 85.0
C13 C14 C15 H152 300.0 205.1
C13 C14 C15 H153 60.0 325.1
C13 C14 C16 H161 180.0 60.0
C13 C14 C16 H162 300.0 180.0
C13 C14 C16 H163 60.0 300.0
H131 C13 C12 H121 256.1 296.0
H131 C13 C12 H122 139.3 176.0
C12 C13 H131 C14 180.0 180.0
H131 C13 C14 C15 335.0 173.8
H131 C13 C14 C16 176.2 353.8
C15 C14 C13 H131 335.0 173.8
C13 C14 C15 C16 199.8 180.0
C15 C14 C16 H161 17.7 240.0
C15 C14 C16 H162 137.7 359.9
C15 C14 C16 H163 257.6 120.0
H151 C15 C14 H152 240.0 240.0
H151 C15 C14 H153 120.0 120.0
H152 C15 C14 H153 240.0 240.0
C16 C14 C13 H131 176.2 353.8
C13 C14 C16 C15 162.3 180.0
C16 C14 C15 H151 340.1 265.1
C16 C14 C15 H152 100.2 25.1
C16 C14 C15 H153 220.1 145.1
H161 C16 C14 H162 240.0 240.1
H161 C16 C14 H163 120.0 120.0
H162 C16 C14 H163 240.0 239.9
H151 C15 C14 C16 340.1 265.1
C14 C15 H151 H152 120.0 120.1
C14 C15 H151 H153 240.0 240.0
H152 C15 H151 H153 120.0 119.9
H152 C15 C14 C16 100.2 25.1
C14 C15 H152 H151 240.0 240.0
C14 C15 H152 H153 120.0 120.0
H151 C15 H152 H153 240.0 240.1
H153 C15 C14 C16 220.1 145.1
C14 C15 H153 H151 120.0 120.0
C14 C15 H153 H152 240.0 240.0
H151 C15 H153 H152 120.0 120.0
C14 C16 H161 H162 120.0 120.0
C14 C16 H161 H163 240.0 240.0
H162 C16 H161 H163 120.0 120.0
C14 C16 H162 H161 240.0 240.0
C14 C16 H162 H163 120.0 120.1
H161 C16 H162 H163 240.0 240.0
C14 C16 H163 H161 120.0 120.0
C14 C16 H163 H162 240.1 239.9
H161 C16 H163 H162 120.0 119.9