PDB Chemical Component MHZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MHZ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N NA 1.409 1.454
N HN1 1.019 1.008
N HN2 1.020 1.009
NA CB 1.551 1.469
NA HNA1 1.020 1.009
CB CC 1.567 1.529
CB HB1 1.115 1.090
CB HB2 1.116 1.089
CC CG 1.615 1.529
CC HCC1 1.115 1.090
CC HCC2 1.114 1.090
CG ND 1.734 1.469
CG HG1 1.115 1.090
CG HG2 1.114 1.090
ND CE 1.492 1.468
ND C5' 1.585 1.468
CE HE1 1.116 1.090
CE HE2 1.115 1.090
CE HE3 1.115 1.091
C5' C4' 1.516 1.529
C5' H5'1 1.115 1.091
C5' H5'2 1.115 1.090
C4' O4' 1.456 1.437
C4' C3' 1.527 1.541
C4' H4' 1.115 1.090
O4' C1' 1.417 1.442
C1' N9 1.463 1.463
C1' C2' 1.527 1.549
C1' H1' 1.116 1.091
N9 C4 1.374 1.372
N9 C8 1.375 1.363
C4 N3 1.344 1.328
C4 C5 1.384 1.405
N3 C2 1.331 1.316
C2 N1 1.338 1.321
C2 H2 1.102 1.080
N1 C6 1.352 1.329
C6 N6 1.338 1.384
C6 C5 1.406 1.405
N6 HN61 1.020 0.970
N6 HN62 1.020 0.970
C5 N7 1.389 1.354
N7 C8 1.312 1.302
C8 H8 1.104 1.081
C2' O2' 1.413 1.429
C2' C3' 1.523 1.551
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C3' O3' 1.424 1.429
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967

Bond Angles for MHZ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
NA N HN1 109.7 106.8
NA N HN2 112.1 106.7
N NA CB 109.7 106.8
N NA HNA1 112.1 106.7
HN1 N HN2 112.1 106.8
CB NA HNA1 112.1 106.7
NA CB CC 110.9 109.5
NA CB HB1 111.7 109.4
NA CB HB2 111.7 109.4
CC CB HB1 111.6 109.5
CC CB HB2 111.6 109.5
CB CC CG 109.9 109.5
CB CC HCC1 112.1 109.5
CB CC HCC2 112.0 109.5
HB1 CB HB2 98.7 109.5
CG CC HCC1 112.0 109.4
CG CC HCC2 112.1 109.5
CC CG ND 109.9 109.5
CC CG HG1 112.1 109.5
CC CG HG2 112.1 109.5
HCC1 CC HCC2 98.4 109.5
ND CG HG1 112.0 109.5
ND CG HG2 112.0 109.4
CG ND CE 107.0 106.7
CG ND C5' 108.6 106.7
HG1 CG HG2 98.4 109.4
CE ND C5' 108.6 106.6
ND CE HE1 107.0 109.5
ND CE HE2 113.1 109.5
ND CE HE3 113.1 109.5
ND C5' C4' 110.6 109.5
ND C5' H5'1 111.8 109.5
ND C5' H5'2 111.8 109.5
HE1 CE HE2 113.1 109.5
HE1 CE HE3 113.1 109.4
HE2 CE HE3 97.4 109.4
C4' C5' H5'1 111.7 109.4
C4' C5' H5'2 111.8 109.5
C5' C4' O4' 109.6 109.9
C5' C4' C3' 115.2 109.9
C5' C4' H4' 104.3 109.8
H5'1 C5' H5'2 98.6 109.5
O4' C4' C3' 105.7 107.4
O4' C4' H4' 114.0 109.9
C4' O4' C1' 109.7 107.0
C3' C4' H4' 108.2 109.8
C4' C3' C2' 102.6 104.0
C4' C3' O3' 110.0 110.8
C4' C3' H3' 113.8 110.4
O4' C1' N9 108.4 110.6
O4' C1' C2' 105.4 103.5
O4' C1' H1' 114.3 110.6
N9 C1' C2' 113.5 110.8
N9 C1' H1' 106.3 110.5
C1' N9 C4 126.2 126.4
C1' N9 C8 128.0 126.3
C2' C1' H1' 109.2 110.6
C1' C2' O2' 111.0 110.9
C1' C2' C3' 101.0 102.1
C1' C2' H2' 115.3 110.9
C4 N9 C8 105.8 107.4
N9 C4 N3 127.2 134.9
N9 C4 C5 105.9 106.0
N9 C8 N7 113.8 110.0
N9 C8 H8 125.2 125.0
N3 C4 C5 126.9 119.1
C4 N3 C2 110.6 120.7
C4 C5 C6 116.9 118.1
C4 C5 N7 110.7 107.2
N3 C2 N1 129.2 122.4
N3 C2 H2 115.1 118.8
N1 C2 H2 115.7 118.7
C2 N1 C6 118.7 121.1
N1 C6 N6 118.6 120.7
N1 C6 C5 117.6 118.5
N6 C6 C5 123.8 120.8
C6 N6 HN61 118.6 120.0
C6 N6 HN62 108.9 120.0
C6 C5 N7 132.4 134.7
HN61 N6 HN62 108.9 120.0
C5 N7 C8 103.9 109.4
N7 C8 H8 121.1 125.0
O2' C2' C3' 113.1 110.8
O2' C2' H2' 103.7 110.8
C2' O2' HO2' 111.1 106.8
C3' C2' H2' 113.3 111.0
C2' C3' O3' 110.0 110.5
C2' C3' H3' 113.8 110.5
O3' C3' H3' 106.7 110.4
C3' O3' HO3' 110.0 106.8

Torsion Angles for MHZ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN1 N NA HN2 125.3 246.2
CB NA N HNA1 125.2 113.8
N NA CB CC 327.6 180.0
N NA CB HB1 92.9 60.0
N NA CB HB2 202.4 300.0
NA N HN1 HN2 234.7 113.8
HN1 N NA CB 180.0 180.0
HN1 N NA HNA1 54.8 66.2
NA N HN2 HN1 123.9 246.1
HN2 N NA CB 54.7 293.8
HN2 N NA HNA1 289.5 180.0
CB NA N HN1 180.0 180.0
CB NA N HN2 54.7 293.8
N NA CB HNA1 234.8 246.2
CC CB NA HB1 234.7 120.0
CC CB NA HB2 125.2 240.0
NA CB CC CG 116.5 180.0
NA CB CC HCC1 241.7 60.0
NA CB CC HCC2 351.2 300.0
HB1 CB NA HB2 250.5 120.0
HNA1 NA N HN1 54.8 66.2
HNA1 NA N HN2 289.5 180.0
N NA HNA1 CB 123.9 113.9
HNA1 NA CB CC 92.8 293.8
HNA1 NA CB HB1 218.1 173.8
HNA1 NA CB HB2 327.6 53.8
CC CB NA HNA1 92.8 293.8
NA CB CC HB1 125.3 240.0
NA CB CC HB2 234.7 120.0
HB1 CB CC HB2 109.4 240.0
CG CC CB HCC1 234.8 120.0
CG CC CB HCC2 125.3 240.0
CB CC CG ND 79.5 180.0
CB CC CG HG1 204.7 60.0
CB CC CG HG2 314.3 300.0
HCC1 CC CB HCC2 250.5 120.0
HB1 CB NA HNA1 218.1 173.8
NA CB HB1 CC 235.1 120.0
NA CB HB1 HB2 117.6 240.1
CC CB HB1 HB2 242.5 120.0
HB1 CB CC CG 351.2 300.0
HB1 CB CC HCC1 116.4 180.0
HB1 CB CC HCC2 225.9 60.0
HB2 CB NA HNA1 327.6 53.8
NA CB HB2 CC 124.8 240.0
NA CB HB2 HB1 242.4 119.9
CC CB HB2 HB1 117.5 240.0
HB2 CB CC CG 241.8 60.0
HB2 CB CC HCC1 7.0 300.0
HB2 CB CC HCC2 116.5 180.0
CG CC CB HB1 351.2 300.0
CG CC CB HB2 241.8 60.0
CB CC CG HCC1 125.3 240.0
CB CC CG HCC2 234.7 120.1
HCC1 CC CG HCC2 109.5 240.1
ND CG CC HG1 234.8 120.1
ND CG CC HG2 125.2 240.0
CC CG ND CE 247.3 293.8
CC CG ND C5' 130.2 180.0
HG1 CG CC HG2 250.4 119.9
HCC1 CC CB HB1 116.4 180.0
HCC1 CC CB HB2 7.0 300.0
CB CC HCC1 CG 235.9 120.0
CB CC HCC1 HCC2 118.0 240.0
CG CC HCC1 HCC2 242.0 119.9
HCC1 CC CG ND 314.2 300.0
HCC1 CC CG HG1 79.4 180.0
HCC1 CC CG HG2 189.0 60.0
HCC2 CC CB HB1 225.9 60.0
HCC2 CC CB HB2 116.5 180.0
CB CC HCC2 CG 124.1 239.9
CB CC HCC2 HCC1 242.0 120.0
CG CC HCC2 HCC1 117.9 240.1
HCC2 CC CG ND 204.8 60.0
HCC2 CC CG HG1 330.0 299.9
HCC2 CC CG HG2 79.5 180.0
ND CG CC HCC1 314.2 300.0
ND CG CC HCC2 204.8 60.0
CC CG ND HG1 125.2 239.9
CC CG ND HG2 234.7 120.1
HG1 CG ND HG2 109.5 240.1
CE ND CG C5' 117.1 113.7
CG ND CE HE1 180.0 179.9
CG ND CE HE2 305.2 300.0
CG ND CE HE3 54.8 60.0
CG ND C5' C4' 183.7 180.0
CG ND C5' H5'1 308.9 300.0
CG ND C5' H5'2 58.5 60.0
HG1 CG CC HCC1 79.4 180.0
HG1 CG CC HCC2 330.0 299.9
CC CG HG1 ND 236.0 120.1
CC CG HG1 HG2 118.0 240.0
ND CG HG1 HG2 242.1 119.9
HG1 CG ND CE 122.1 53.8
HG1 CG ND C5' 5.0 300.1
HG2 CG CC HCC1 189.0 60.0
HG2 CG CC HCC2 79.5 180.0
CC CG HG2 ND 124.1 239.9
CC CG HG2 HG1 242.0 120.0
ND CG HG2 HG1 117.9 240.1
HG2 CG ND CE 12.6 173.7
HG2 CG ND C5' 255.5 60.0
CE ND CG HG1 122.1 53.8
CE ND CG HG2 12.6 173.7
CG ND CE C5' 242.9 246.2
CE ND C5' C4' 67.7 66.3
CE ND C5' H5'1 192.9 186.2
CE ND C5' H5'2 302.4 306.2
HE1 CE ND HE2 234.8 239.9
HE1 CE ND HE3 125.2 119.9
HE2 CE ND HE3 250.4 240.1
C5' ND CG HG1 5.0 300.1
C5' ND CG HG2 255.5 60.0
CG ND C5' CE 116.1 113.7
C5' ND CE HE1 297.1 293.7
C5' ND CE HE2 62.3 53.8
C5' ND CE HE3 171.9 173.8
C4' C5' ND H5'1 234.8 240.0
C4' C5' ND H5'2 125.2 120.1
ND C5' C4' O4' 39.1 61.7
ND C5' C4' C3' 158.2 179.7
ND C5' C4' H4' 276.7 300.6
H5'1 C5' ND H5'2 250.5 240.0
HE1 CE ND C5' 297.1 293.7
ND CE HE1 HE2 125.2 120.1
ND CE HE1 HE3 234.7 240.0
HE2 CE HE1 HE3 109.5 119.9
HE2 CE ND C5' 62.3 53.8
ND CE HE2 HE1 238.1 239.9
ND CE HE2 HE3 119.1 120.0
HE1 CE HE2 HE3 241.0 240.1
HE3 CE ND C5' 171.9 173.8
ND CE HE3 HE1 121.9 120.0
ND CE HE3 HE2 240.9 240.0
HE1 CE HE3 HE2 119.0 120.0
ND C5' C4' H5'1 125.3 120.0
ND C5' C4' H5'2 234.7 239.9
H5'1 C5' C4' H5'2 109.5 119.9
O4' C4' C5' C3' 241.0 242.0
O4' C4' C5' H4' 122.5 121.1
C5' C4' O4' C1' 122.2 146.0
C3' C4' C5' H4' 241.5 239.1
C5' C4' C3' C2' 264.5 238.6
C5' C4' C3' O3' 147.5 119.8
C5' C4' C3' H3' 27.8 357.1
ND C5' H5'1 C4' 235.4 240.0
ND C5' H5'1 H5'2 117.8 120.0
C4' C5' H5'1 H5'2 242.3 240.0
H5'1 C5' C4' O4' 273.8 301.7
H5'1 C5' C4' C3' 32.9 59.7
H5'1 C5' C4' H4' 151.4 180.7
ND C5' H5'2 C4' 124.6 120.1
ND C5' H5'2 H5'1 242.2 240.0
C4' C5' H5'2 H5'1 117.6 119.9
H5'2 C5' C4' O4' 164.4 181.8
H5'2 C5' C4' C3' 283.4 299.8
H5'2 C5' C4' H4' 41.9 60.7
O4' C4' C5' H5'1 273.8 301.7
O4' C4' C5' H5'2 164.4 181.8
C5' C4' O4' C3' 124.7 119.6
C5' C4' O4' H4' 243.5 239.0
C3' C4' O4' H4' 118.8 119.4
O4' C4' C3' C2' 25.7 358.1
O4' C4' C3' O3' 268.7 239.3
O4' C4' C3' H3' 149.0 116.7
C4' O4' C1' N9 216.2 201.2
C4' O4' C1' C2' 338.1 320.0
C4' O4' C1' H1' 97.9 78.4
C3' C4' C5' H5'1 32.9 59.7
C3' C4' C5' H5'2 283.4 299.8
C5' C4' C3' O4' 238.8 240.4
C5' C4' C3' H4' 116.3 121.0
O4' C4' C3' H4' 237.5 240.5
C3' C4' O4' C1' 357.5 26.4
C1' C2' C3' C4' 322.5 339.0
O2' C2' C3' C4' 203.9 220.8
C4' C3' C2' H2' 86.4 97.2
C2' C3' C4' O3' 117.0 118.8
C2' C3' C4' H3' 236.7 241.4
O3' C3' C4' H3' 119.7 122.6
C4' C3' O3' HO3' 180.0 176.2
H4' C4' C5' H5'1 151.4 180.7
H4' C4' C5' H5'2 41.9 60.7
C5' C4' H4' O4' 119.5 121.1
C5' C4' H4' C3' 236.8 239.0
O4' C4' H4' C3' 117.3 117.9
H4' C4' O4' C1' 238.7 267.0
H4' C4' C3' C2' 148.2 117.6
H4' C4' C3' O3' 31.2 358.8
H4' C4' C3' H3' 271.5 236.2
C1' O4' C4' C3' 357.5 26.4
C1' O4' C4' H4' 238.7 267.0
N9 C1' O4' C2' 238.2 241.2
N9 C1' O4' H1' 118.3 122.8
O4' C1' N9 C4 46.0 208.2
O4' C1' N9 C8 226.2 28.7
C2' C1' O4' H1' 240.1 241.5
O4' C1' C2' O2' 157.3 155.2
O4' C1' C2' C3' 37.1 37.1
O4' C1' C2' H2' 274.7 278.8
O4' C1' N9 C2' 116.7 114.2
O4' C1' N9 H1' 236.8 237.1
C2' C1' N9 H1' 120.0 122.9
N9 C1' C2' O2' 275.7 273.9
N9 C1' C2' C3' 155.6 155.7
N9 C1' C2' H2' 33.2 37.4
C4 N9 C1' C8 179.8 179.5
C1' N9 C4 N3 0.3 1.0
C1' N9 C4 C5 180.0 179.9
C1' N9 C8 N7 179.9 179.9
C1' N9 C8 H8 359.9 359.9
C4' C3' C2' C1' 322.5 339.0
O4' C1' C2' N9 241.5 241.4
O4' C1' C2' H1' 123.2 118.5
N9 C1' C2' H1' 241.6 237.1
C2' C1' N9 C4 289.2 94.0
C2' C1' N9 C8 109.4 274.5
O2' C2' C1' C3' 120.1 118.1
O2' C2' C1' H2' 242.6 236.4
C1' C2' O2' HO2' 180.0 179.9
C3' C2' C1' H2' 122.4 118.3
C1' C2' C3' O3' 79.5 98.0
C1' C2' C3' H3' 199.2 220.5
O4' C1' H1' N9 119.5 122.9
O4' C1' H1' C2' 242.3 246.0
N9 C1' H1' C2' 122.8 123.1
H1' C1' N9 C4 169.2 331.0
H1' C1' N9 C8 349.4 151.5
H1' C1' C2' O2' 34.1 36.8
H1' C1' C2' C3' 274.0 278.6
H1' C1' C2' H2' 151.5 160.3
C4 N9 C1' C2' 289.2 94.0
C4 N9 C1' H1' 169.2 331.0
C1' N9 C4 C8 180.2 180.4
C4 N9 C8 N7 0.1 0.3
C4 N9 C8 H8 180.1 180.3
N3 C4 N9 C5 180.2 181.0
N9 C4 N3 C2 179.8 179.6
N9 C4 C5 C6 180.3 180.2
N9 C4 C5 N7 0.1 0.4
C8 N9 C1' C2' 109.4 274.5
C8 N9 C1' H1' 349.4 151.5
C1' N9 C8 C4 179.8 179.6
C8 N9 C4 N3 180.1 180.6
C8 N9 C4 C5 359.9 359.5
C5 N7 C8 N9 0.0 359.9
N7 C8 N9 H8 180.0 180.1
N3 C4 N9 C8 180.1 180.6
N9 C4 N3 C5 179.7 178.9
N3 C4 C5 C6 0.0 359.4
N3 C4 C5 N7 179.9 179.6
C4 N3 C2 N1 359.9 359.6
C4 N3 C2 H2 179.9 179.7
C5 C4 N9 C8 359.9 359.5
N9 C4 C5 N3 180.2 180.8
C5 C4 N3 C2 0.1 0.7
N1 C6 C5 C4 359.8 0.3
N6 C6 C5 C4 179.7 180.3
C6 C5 C4 N7 180.1 179.8
C4 C5 N7 C8 359.9 359.8
C2 N3 C4 C5 0.1 0.7
N1 C2 N3 H2 180.0 179.9
N3 C2 N1 C6 360.0 0.1
N3 C2 N1 H2 180.0 180.1
C2 N1 C6 N6 180.3 180.0
C2 N1 C6 C5 0.2 360.0
N3 C2 H2 N1 180.0 179.9
H2 C2 N1 C6 179.9 179.9
C4 C5 C6 N1 359.8 0.3
C6 N1 C2 H2 179.9 179.9
N6 C6 N1 C5 180.1 180.0
N1 C6 N6 HN61 180.0 360.0
N1 C6 N6 HN62 54.8 180.0
N1 C6 C5 N7 180.0 180.0
C4 C5 C6 N6 179.7 180.3
N1 C6 N6 C5 179.9 180.0
N6 C6 C5 N7 359.9 0.0
HN61 N6 C6 HN62 125.2 179.9
C4 C5 C6 N7 179.8 180.3
N1 C6 C5 N6 180.1 180.0
C5 C6 N6 HN61 0.0 180.0
C5 C6 N6 HN62 234.9 0.0
C6 C5 N7 C8 179.7 180.0
HN61 N6 C6 C5 0.0 180.0
C6 N6 HN61 HN62 234.8 180.1
HN62 N6 C6 C5 234.9 0.0
C6 N6 HN62 HN61 130.7 179.9
N9 C8 N7 C5 0.0 359.9
C4 C5 N7 C6 180.2 179.8
C5 N7 C8 H8 180.0 180.0
N9 C8 N7 H8 180.0 179.9
N9 C8 H8 N7 180.0 180.1
C4' C3' C2' O2' 203.9 220.8
O2' C2' C1' H1' 34.1 36.8
C1' C2' O2' C3' 247.4 247.3
C1' C2' O2' H2' 124.3 123.6
C3' C2' O2' H2' 237.0 236.3
O2' C2' C3' O3' 320.9 339.7
O2' C2' C3' H3' 80.6 102.3
C2' C3' C4' H4' 148.2 117.6
C4' C3' C2' O3' 243.0 241.0
C4' C3' C2' H3' 123.3 118.5
C3' C2' C1' H1' 274.0 278.6
C1' C2' C3' O2' 118.6 118.2
C1' C2' C3' H2' 236.2 241.8
O2' C2' C3' H2' 117.5 123.6
C3' C2' O2' HO2' 292.6 292.7
O3' C3' C2' H3' 240.3 237.5
C2' C3' O3' HO3' 67.7 61.5
H2' C2' C1' H1' 151.5 160.3
C1' C2' H2' O2' 238.5 236.4
C1' C2' H2' C3' 115.6 112.8
O2' C2' H2' C3' 237.1 236.4
H2' C2' O2' HO2' 55.7 56.3
H2' C2' C3' O3' 203.4 216.2
H2' C2' C3' H3' 323.0 338.7
HO2' O2' C2' C3' 292.6 292.7
HO2' O2' C2' H2' 55.7 56.3
O3' C3' C4' H4' 31.2 358.8
C4' C3' O3' C2' 112.3 114.8
C4' C3' O3' H3' 236.1 237.4
O3' C3' C2' H2' 203.4 216.2
C2' C3' O3' H3' 123.8 122.6
H3' C3' C4' H4' 271.5 236.2
C4' C3' H3' C2' 243.0 245.5
C4' C3' H3' O3' 121.5 122.9
H3' C3' C2' H2' 323.0 338.7
C2' C3' H3' O3' 238.5 237.4
H3' C3' O3' HO3' 303.9 298.8
HO3' O3' C3' H3' 303.9 298.8