PDB Chemical Component MHG
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MHG
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C75 |
C73 |
1.522 |
1.530 |
C76 |
C74 |
1.511 |
1.530 |
C73 |
C72 |
1.523 |
1.530 |
C73 |
C74 |
1.523 |
1.529 |
C71 |
C72 |
1.520 |
1.530 |
C71 |
N7 |
1.466 |
1.465 |
O6 |
C6 |
1.242 |
1.222 |
N7 |
C8 |
1.454 |
1.469 |
N7 |
C5 |
1.336 |
1.412 |
C6 |
C5 |
1.466 |
1.403 |
C6 |
N1 |
1.334 |
1.350 |
O2' |
C2' |
1.410 |
1.429 |
C8 |
N9 |
1.457 |
1.468 |
C5 |
C4 |
1.456 |
1.385 |
N1 |
C2 |
1.340 |
1.360 |
N9 |
C4 |
1.319 |
1.386 |
N9 |
C1' |
1.465 |
1.464 |
C4 |
N3 |
1.337 |
1.343 |
C2' |
C1' |
1.513 |
1.545 |
C2' |
C3' |
1.516 |
1.545 |
C2 |
N3 |
1.336 |
1.314 |
C2 |
N2 |
1.342 |
1.372 |
C1' |
O4' |
1.406 |
1.444 |
N2 |
C21 |
1.450 |
1.465 |
O3' |
C3' |
1.426 |
1.429 |
OP1 |
P |
1.501 |
1.480 |
C3' |
C4' |
1.525 |
1.545 |
O4' |
C4' |
1.452 |
1.444 |
OP2 |
P |
1.498 |
1.610 |
P |
O5' |
1.587 |
1.610 |
C4' |
C5' |
1.503 |
1.530 |
O5' |
C5' |
1.419 |
1.429 |
C1' |
H1 |
1.100 |
1.090 |
C2' |
H2 |
1.100 |
1.090 |
C21 |
H3 |
1.100 |
1.091 |
C21 |
H4 |
1.100 |
1.091 |
C21 |
H5 |
1.100 |
1.090 |
C3' |
H6 |
1.100 |
1.090 |
C4' |
H7 |
1.100 |
1.090 |
C5' |
H8 |
1.100 |
1.090 |
C5' |
H9 |
1.100 |
1.089 |
C8 |
H10 |
1.100 |
1.090 |
N1 |
H11 |
1.000 |
0.970 |
N2 |
H12 |
1.000 |
0.971 |
O2' |
H13 |
0.950 |
0.967 |
O3' |
H14 |
0.950 |
0.967 |
OP2 |
H16 |
0.950 |
0.967 |
C71 |
H17 |
1.100 |
1.090 |
C71 |
H18 |
1.100 |
1.090 |
C72 |
H19 |
1.100 |
1.090 |
C72 |
H20 |
1.100 |
1.089 |
C73 |
H21 |
1.100 |
1.090 |
C74 |
H22 |
1.100 |
1.090 |
C74 |
H23 |
1.100 |
1.090 |
C75 |
H24 |
1.100 |
1.091 |
C75 |
H25 |
1.100 |
1.090 |
C75 |
H26 |
1.100 |
1.090 |
C76 |
H27 |
1.100 |
1.090 |
C76 |
H28 |
1.100 |
1.090 |
C76 |
H29 |
1.100 |
1.091 |
P |
OP3 |
1.600 |
1.610 |
OP3 |
H15 |
0.950 |
0.968 |
C8 |
H30 |
1.100 |
1.089 |
Bond Angles for MHG
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C75 |
C73 |
H21 |
108.4 |
109.4 |
C76 |
C74 |
H22 |
108.9 |
109.4 |
C76 |
C74 |
H23 |
108.9 |
109.4 |
C73 |
C72 |
H19 |
109.3 |
109.5 |
C73 |
C72 |
H20 |
109.3 |
109.5 |
C74 |
C73 |
H21 |
108.3 |
109.5 |
C73 |
C74 |
H22 |
108.9 |
109.5 |
C73 |
C74 |
H23 |
108.9 |
109.5 |
C72 |
C71 |
H17 |
107.8 |
109.4 |
C72 |
C71 |
H18 |
107.8 |
109.4 |
C71 |
C72 |
H19 |
109.3 |
109.4 |
C71 |
C72 |
H20 |
109.3 |
109.4 |
N7 |
C8 |
N9 |
95.9 |
105.6 |
N7 |
C8 |
H10 |
112.8 |
110.2 |
N7 |
C8 |
H30 |
112.7 |
110.3 |
C6 |
N1 |
H11 |
118.3 |
120.0 |
O2' |
C2' |
H2 |
111.2 |
110.6 |
N9 |
C8 |
H10 |
112.7 |
110.2 |
N9 |
C8 |
H30 |
112.8 |
110.3 |
C5 |
C4 |
N3 |
119.7 |
119.3 |
N1 |
C2 |
N3 |
123.0 |
121.5 |
N1 |
C2 |
N2 |
118.8 |
119.3 |
N9 |
C1' |
O4' |
111.1 |
110.4 |
N9 |
C1' |
H1 |
107.7 |
110.3 |
C2 |
N3 |
C4 |
119.9 |
121.3 |
C2' |
C1' |
O4' |
104.9 |
104.8 |
C2' |
C1' |
H1 |
107.1 |
110.4 |
C2' |
C3' |
C4' |
101.5 |
104.1 |
C3' |
C2' |
H2 |
109.7 |
110.6 |
C2' |
C3' |
H6 |
112.1 |
110.5 |
N2 |
C2 |
N3 |
118.1 |
119.2 |
C2 |
N2 |
C21 |
120.7 |
120.0 |
C2 |
N2 |
H12 |
119.7 |
120.0 |
C1' |
O4' |
C4' |
108.6 |
105.3 |
O4' |
C1' |
H1 |
108.5 |
110.3 |
N2 |
C21 |
H3 |
109.5 |
109.5 |
N2 |
C21 |
H4 |
109.5 |
109.5 |
N2 |
C21 |
H5 |
109.5 |
109.5 |
O3' |
C3' |
H6 |
113.6 |
110.5 |
OP1 |
P |
OP2 |
119.6 |
109.5 |
OP1 |
P |
OP3 |
107.8 |
109.4 |
C3' |
C4' |
C5' |
114.9 |
110.4 |
C4' |
C3' |
H6 |
111.9 |
110.5 |
C3' |
C4' |
H7 |
108.8 |
110.3 |
O4' |
C4' |
H7 |
109.7 |
110.5 |
P |
OP2 |
H16 |
109.5 |
114.0 |
OP2 |
P |
OP3 |
108.1 |
109.5 |
C5' |
C4' |
H7 |
109.0 |
110.4 |
C4' |
C5' |
H8 |
109.0 |
109.5 |
C4' |
C5' |
H9 |
109.0 |
109.5 |
O5' |
C5' |
H8 |
109.0 |
109.5 |
O5' |
C5' |
H9 |
109.0 |
109.5 |
H3 |
C21 |
H4 |
109.5 |
109.4 |
H3 |
C21 |
H5 |
109.5 |
109.4 |
H4 |
C21 |
H5 |
109.5 |
109.5 |
H8 |
C5' |
H9 |
109.5 |
109.5 |
H10 |
C8 |
H30 |
109.4 |
110.2 |
H17 |
C71 |
H18 |
109.4 |
109.5 |
H19 |
C72 |
H20 |
109.5 |
109.5 |
H22 |
C74 |
H23 |
109.5 |
109.4 |
H24 |
C75 |
H25 |
109.5 |
109.5 |
H24 |
C75 |
H26 |
109.5 |
109.4 |
H25 |
C75 |
H26 |
109.4 |
109.5 |
H27 |
C76 |
H28 |
109.4 |
109.5 |
H27 |
C76 |
H29 |
109.5 |
109.5 |
H28 |
C76 |
H29 |
109.5 |
109.5 |
P |
OP3 |
H15 |
109.5 |
113.9 |
Torsion Angles for MHG
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C75 |
C73 |
C72 |
H19 |
267.8 |
305.0 |
C75 |
C73 |
C72 |
H20 |
27.7 |
185.0 |
C74 |
C73 |
C75 |
H21 |
119.2 |
120.0 |
C75 |
C73 |
C74 |
H22 |
173.9 |
55.0 |
C75 |
C73 |
C74 |
H23 |
54.5 |
175.0 |
C76 |
C74 |
C73 |
H21 |
53.5 |
55.0 |
C73 |
C74 |
C76 |
H22 |
239.7 |
120.1 |
C73 |
C74 |
C76 |
H23 |
120.3 |
240.0 |
H22 |
C74 |
C76 |
H23 |
240.6 |
119.9 |
C73 |
C72 |
C71 |
H17 |
284.5 |
60.0 |
C73 |
C72 |
C71 |
H18 |
42.5 |
300.0 |
C71 |
C72 |
C73 |
H19 |
240.0 |
120.0 |
C71 |
C72 |
C73 |
H20 |
120.1 |
240.0 |
H19 |
C72 |
C73 |
H20 |
240.1 |
120.0 |
C75 |
C73 |
C74 |
H21 |
240.8 |
240.0 |
C76 |
C74 |
C73 |
H22 |
120.3 |
240.0 |
C76 |
C74 |
C73 |
H23 |
239.7 |
120.0 |
C74 |
C73 |
C72 |
H19 |
31.2 |
65.0 |
C74 |
C73 |
C72 |
H20 |
151.1 |
305.0 |
H22 |
C74 |
C73 |
H23 |
119.4 |
240.0 |
C73 |
C72 |
C71 |
H19 |
120.1 |
240.0 |
C73 |
C72 |
C71 |
H20 |
239.9 |
120.0 |
H17 |
C71 |
C72 |
H18 |
242.0 |
120.0 |
H19 |
C72 |
C71 |
H20 |
119.9 |
240.0 |
C71 |
N7 |
C8 |
H10 |
298.2 |
299.0 |
C71 |
N7 |
C8 |
H30 |
62.8 |
60.9 |
O6 |
C6 |
N1 |
H11 |
0.3 |
0.4 |
N9 |
C8 |
N7 |
H10 |
242.3 |
241.0 |
N9 |
C8 |
N7 |
H30 |
117.7 |
119.1 |
H10 |
C8 |
N7 |
H30 |
235.4 |
238.1 |
C6 |
C5 |
C4 |
N3 |
1.0 |
359.5 |
C6 |
N1 |
C2 |
N3 |
0.9 |
0.1 |
C6 |
N1 |
C2 |
N2 |
180.8 |
180.3 |
O2' |
C2' |
C1' |
O4' |
164.2 |
142.6 |
O2' |
C2' |
C1' |
H1 |
49.1 |
23.8 |
C3' |
C2' |
O2' |
H2 |
235.1 |
237.3 |
O2' |
C2' |
C3' |
H6 |
79.5 |
122.7 |
N7 |
C8 |
N9 |
H10 |
117.7 |
119.0 |
N7 |
C8 |
N9 |
H30 |
242.3 |
240.8 |
C8 |
N9 |
C1' |
O4' |
107.8 |
233.5 |
C8 |
N9 |
C1' |
H1 |
226.5 |
355.7 |
H10 |
C8 |
N9 |
H30 |
124.6 |
121.9 |
C2 |
N3 |
C4 |
C5 |
359.4 |
0.0 |
N1 |
C2 |
N3 |
C4 |
359.7 |
0.2 |
N2 |
C2 |
N1 |
N3 |
180.0 |
180.2 |
N1 |
C2 |
N2 |
C21 |
163.8 |
179.8 |
N1 |
C2 |
N2 |
H12 |
343.8 |
359.8 |
C4 |
N9 |
C1' |
O4' |
285.2 |
53.6 |
C4 |
N9 |
C1' |
H1 |
43.9 |
175.8 |
C2' |
C1' |
N9 |
O4' |
239.5 |
244.5 |
C2' |
C1' |
N9 |
H1 |
120.8 |
122.3 |
N9 |
C1' |
O4' |
C4' |
205.5 |
200.5 |
O4' |
C1' |
N9 |
H1 |
241.3 |
237.8 |
N2 |
C2 |
N3 |
C4 |
179.7 |
180.0 |
N9 |
C1' |
C2' |
O4' |
123.7 |
118.9 |
N9 |
C1' |
C2' |
H1 |
238.9 |
237.7 |
C2' |
C1' |
O4' |
C4' |
333.0 |
319.5 |
O4' |
C1' |
C2' |
H1 |
115.2 |
118.8 |
O2' |
C2' |
C3' |
H2 |
125.7 |
122.7 |
C3' |
C2' |
C1' |
O4' |
43.0 |
24.0 |
C3' |
C2' |
C1' |
H1 |
287.8 |
265.2 |
O3' |
C3' |
C2' |
H6 |
233.7 |
237.4 |
C2' |
C3' |
C4' |
C5' |
267.4 |
217.2 |
C4' |
C3' |
C2' |
H6 |
119.6 |
118.6 |
C2' |
C3' |
C4' |
H7 |
144.8 |
95.0 |
C5 |
C4 |
N3 |
C2 |
359.4 |
0.0 |
N1 |
C2 |
N3 |
N2 |
180.0 |
180.2 |
N3 |
C2 |
N2 |
C21 |
343.7 |
0.0 |
N3 |
C2 |
N2 |
H12 |
163.7 |
180.0 |
N1 |
C2 |
N2 |
N3 |
180.0 |
179.8 |
C2 |
N2 |
C21 |
H3 |
180.0 |
300.0 |
C2 |
N2 |
C21 |
H4 |
300.0 |
60.0 |
C2 |
N2 |
C21 |
H5 |
60.0 |
180.0 |
N9 |
C1' |
O4' |
H1 |
118.3 |
122.2 |
C2' |
C1' |
O4' |
H1 |
245.8 |
241.2 |
C1' |
O4' |
C4' |
H7 |
242.6 |
281.7 |
C21 |
N2 |
C2 |
N3 |
343.7 |
0.0 |
C2 |
N2 |
C21 |
H12 |
180.0 |
180.0 |
H3 |
C21 |
N2 |
H4 |
240.0 |
240.0 |
H3 |
C21 |
N2 |
H5 |
120.0 |
120.0 |
H4 |
C21 |
N2 |
H5 |
240.0 |
240.0 |
O3' |
C3' |
C2' |
H2 |
187.5 |
237.3 |
C2' |
C3' |
O3' |
H6 |
125.4 |
122.6 |
C4' |
C3' |
O3' |
H6 |
234.9 |
237.3 |
O3' |
C3' |
C4' |
H7 |
30.6 |
336.3 |
OP1 |
P |
OP2 |
H16 |
0.0 |
180.0 |
OP2 |
P |
OP1 |
OP3 |
236.1 |
120.0 |
OP1 |
P |
OP3 |
H15 |
360.0 |
60.0 |
C4' |
C3' |
C2' |
H2 |
73.4 |
118.6 |
C2' |
C3' |
C4' |
H6 |
240.3 |
241.4 |
C1' |
O4' |
C4' |
C3' |
359.6 |
40.5 |
O3' |
C3' |
C4' |
H6 |
126.1 |
122.7 |
O4' |
C4' |
C3' |
H7 |
242.4 |
241.1 |
C5' |
C4' |
C3' |
H7 |
122.6 |
122.2 |
C3' |
C4' |
C5' |
H8 |
90.8 |
305.0 |
C3' |
C4' |
C5' |
H9 |
210.2 |
65.0 |
C4' |
O4' |
C1' |
H1 |
87.3 |
78.3 |
O4' |
C4' |
C3' |
H6 |
146.9 |
94.7 |
C3' |
C4' |
O4' |
H7 |
117.0 |
118.8 |
C5' |
C4' |
O4' |
H7 |
240.8 |
237.6 |
O4' |
C4' |
C5' |
H8 |
332.9 |
189.7 |
O4' |
C4' |
C5' |
H9 |
92.3 |
309.7 |
OP1 |
P |
OP2 |
OP3 |
123.8 |
240.0 |
OP2 |
P |
OP3 |
H15 |
130.6 |
300.0 |
P |
O5' |
C5' |
H8 |
5.5 |
60.1 |
P |
O5' |
C5' |
H9 |
246.1 |
300.0 |
C1' |
O4' |
C4' |
C5' |
123.4 |
159.3 |
C5' |
C4' |
C3' |
H6 |
27.1 |
335.8 |
C3' |
C4' |
C5' |
H7 |
237.6 |
237.8 |
O4' |
C4' |
C5' |
H7 |
119.7 |
122.5 |
O5' |
C5' |
C4' |
H8 |
239.7 |
240.0 |
O5' |
C5' |
C4' |
H9 |
120.3 |
120.0 |
H8 |
C5' |
C4' |
H9 |
240.6 |
240.0 |
O5' |
C5' |
C4' |
H7 |
93.0 |
307.2 |
C4' |
C5' |
O5' |
H8 |
120.3 |
120.0 |
C4' |
C5' |
O5' |
H9 |
239.7 |
240.0 |
H8 |
C5' |
O5' |
H9 |
119.4 |
120.0 |
N9 |
C1' |
H1 |
O4' |
239.6 |
237.8 |
C2' |
C1' |
H1 |
O4' |
112.7 |
115.4 |
H1 |
C1' |
O4' |
C4' |
87.3 |
78.3 |
H2 |
C2' |
C1' |
O4' |
288.1 |
265.3 |
H2 |
C2' |
C1' |
H1 |
172.9 |
146.5 |
H2 |
C2' |
C3' |
C4' |
73.4 |
118.6 |
H2 |
C2' |
C3' |
H6 |
313.7 |
360.0 |
N2 |
C21 |
H3 |
H4 |
120.0 |
120.0 |
N2 |
C21 |
H3 |
H5 |
240.0 |
240.0 |
H4 |
C21 |
H3 |
H5 |
120.0 |
120.0 |
N2 |
C21 |
H4 |
H3 |
240.0 |
240.0 |
N2 |
C21 |
H4 |
H5 |
120.0 |
120.0 |
H3 |
C21 |
H4 |
H5 |
240.0 |
240.1 |
N2 |
C21 |
H5 |
H3 |
120.0 |
120.0 |
N2 |
C21 |
H5 |
H4 |
240.0 |
240.0 |
H3 |
C21 |
H5 |
H4 |
120.0 |
119.9 |
C2' |
C3' |
H6 |
C4' |
113.3 |
114.6 |
H6 |
C3' |
C2' |
H2 |
313.7 |
360.0 |
H6 |
C3' |
C4' |
C5' |
27.1 |
335.8 |
H6 |
C3' |
C4' |
H7 |
264.5 |
213.6 |
C3' |
C4' |
H7 |
C5' |
126.1 |
122.2 |
H7 |
C4' |
C3' |
H6 |
264.5 |
213.6 |
H7 |
C4' |
C5' |
H8 |
213.3 |
67.2 |
H7 |
C4' |
C5' |
H9 |
332.7 |
187.2 |
H8 |
C5' |
C4' |
H7 |
213.3 |
67.2 |
C4' |
C5' |
H8 |
H9 |
119.1 |
120.0 |
O5' |
C5' |
H8 |
H9 |
240.9 |
240.0 |
H9 |
C5' |
C4' |
H7 |
332.7 |
187.2 |
C4' |
C5' |
H9 |
H8 |
240.9 |
240.0 |
O5' |
C5' |
H9 |
H8 |
119.1 |
120.0 |
N7 |
C8 |
H10 |
N9 |
252.7 |
243.9 |
N7 |
C8 |
H10 |
H30 |
126.3 |
122.0 |
N9 |
C8 |
H10 |
H30 |
233.6 |
238.1 |
H11 |
N1 |
C2 |
N3 |
180.8 |
180.0 |
H11 |
N1 |
C2 |
N2 |
0.8 |
0.2 |
H12 |
N2 |
C2 |
N3 |
163.7 |
180.0 |
C2 |
N2 |
H12 |
C21 |
180.0 |
180.0 |
H12 |
N2 |
C21 |
H3 |
360.0 |
120.0 |
H12 |
N2 |
C21 |
H4 |
120.0 |
240.0 |
H12 |
N2 |
C21 |
H5 |
240.0 |
0.0 |
H13 |
O2' |
C2' |
H2 |
57.0 |
57.4 |
H14 |
O3' |
C3' |
H6 |
54.6 |
298.8 |
H16 |
OP2 |
P |
OP3 |
236.2 |
300.0 |
C72 |
C71 |
H17 |
H18 |
117.0 |
240.1 |
H17 |
C71 |
C72 |
H19 |
164.4 |
180.0 |
H17 |
C71 |
C72 |
H20 |
44.5 |
300.0 |
C72 |
C71 |
H18 |
H17 |
243.0 |
119.9 |
H18 |
C71 |
C72 |
H19 |
282.5 |
60.0 |
H18 |
C71 |
C72 |
H20 |
162.6 |
180.0 |
C73 |
C72 |
H19 |
H20 |
119.8 |
240.0 |
H19 |
C72 |
C71 |
H17 |
164.4 |
180.0 |
H19 |
C72 |
C71 |
H18 |
282.5 |
60.0 |
C71 |
C72 |
H19 |
H20 |
240.2 |
119.9 |
C73 |
C72 |
H20 |
H19 |
240.2 |
120.0 |
H20 |
C72 |
C71 |
H17 |
44.5 |
300.0 |
H20 |
C72 |
C71 |
H18 |
162.6 |
180.0 |
C71 |
C72 |
H20 |
H19 |
119.8 |
240.1 |
H21 |
C73 |
C72 |
H19 |
148.7 |
185.0 |
H21 |
C73 |
C72 |
H20 |
268.6 |
65.0 |
H21 |
C73 |
C74 |
H22 |
293.1 |
175.0 |
H21 |
C73 |
C74 |
H23 |
173.8 |
295.0 |
C76 |
C74 |
H22 |
H23 |
119.0 |
240.1 |
H22 |
C74 |
C73 |
H21 |
293.1 |
175.0 |
C73 |
C74 |
H22 |
H23 |
241.0 |
120.0 |
C76 |
C74 |
H23 |
H22 |
241.0 |
119.9 |
H23 |
C74 |
C73 |
H21 |
173.8 |
295.0 |
C73 |
C74 |
H23 |
H22 |
119.0 |
240.0 |
H24 |
C75 |
C73 |
H21 |
299.1 |
60.0 |
H25 |
C75 |
H24 |
H26 |
120.0 |
120.0 |
H25 |
C75 |
C73 |
H21 |
59.1 |
180.0 |
H24 |
C75 |
H25 |
H26 |
240.0 |
240.0 |
H26 |
C75 |
C73 |
H21 |
179.0 |
300.0 |
H24 |
C75 |
H26 |
H25 |
120.0 |
120.0 |
H27 |
C76 |
C74 |
H22 |
300.3 |
179.9 |
H27 |
C76 |
C74 |
H23 |
59.7 |
60.0 |
H28 |
C76 |
H27 |
H29 |
120.0 |
120.0 |
H28 |
C76 |
C74 |
H22 |
60.3 |
299.9 |
H28 |
C76 |
C74 |
H23 |
179.7 |
180.0 |
H27 |
C76 |
H28 |
H29 |
240.0 |
240.0 |
H29 |
C76 |
C74 |
H22 |
180.3 |
59.9 |
H29 |
C76 |
C74 |
H23 |
299.7 |
300.0 |
H27 |
C76 |
H29 |
H28 |
120.0 |
120.0 |
OP1 |
P |
OP3 |
OP2 |
229.3 |
120.0 |
OP3 |
P |
OP2 |
H16 |
236.2 |
300.0 |
N7 |
C8 |
H30 |
N9 |
107.3 |
116.2 |
N7 |
C8 |
H30 |
H10 |
233.7 |
238.1 |
N9 |
C8 |
H30 |
H10 |
126.4 |
121.9 |