PDB Chemical Component MGV

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MGV

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAK CAI 1.387 1.382
CAK CAV 1.388 1.383
CAI CAU 1.390 1.385
CAU FAH 1.338 1.351
CAU CAJ 1.383 1.385
CAJ CAL 1.379 1.382
CAL CAV 1.390 1.382
CAV CAO 1.472 1.507
CAO N7 1.464 1.464
N7 C8 1.333 1.301
N7 C5 1.326 1.356
C8 N9 1.337 1.365
C5 C6 1.401 1.415
C5 C4 1.391 1.400
C6 O6 1.234 1.219
C6 N1 1.386 1.351
N1 C2 1.392 1.364
C2 N2 1.328 1.372
C2 N3 1.333 1.314
N3 C4 1.346 1.338
C4 N9 1.337 1.368
N9 C1' 1.521 1.465
C1' O4' 1.417 1.444
C1' C2' 1.532 1.545
O4' C4' 1.462 1.444
C2' O2' 1.416 1.428
C2' C3' 1.524 1.545
C3' O3' 1.453 1.430
C3' C4' 1.529 1.545
C4' C5' 1.555 1.530
C5' O5' 1.429 1.429
O5' P 1.661 1.610
P OP3 1.595 1.610
P OP2 1.600 1.609
P OP1 1.481 1.480
CAK HAK 1.080 1.080
CAI HAI 1.080 1.080
CAJ HAJ 1.080 1.080
CAL HAL 1.080 1.081
CAO HAO1 1.100 1.090
CAO HAO2 1.100 1.090
C8 H8 1.080 1.080
N1 H1 1.000 0.970
N2 H2N1 1.000 0.970
N2 H2N2 1.000 0.971
C1' H1' 1.100 1.090
C2' H2' 1.100 1.091
C4' H4' 1.100 1.089
O2' HA 0.950 0.966
C3' H3' 1.099 1.090
O3' HO3' 0.950 0.967
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
OP3 HOP3 0.950 0.967
OP2 HOP2 0.950 0.967

Bond Angles for MGV

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAI CAK CAV 117.9 120.0
CAK CAI CAU 119.2 120.0
CAI CAK HAK 121.1 120.0
CAK CAI HAI 120.4 120.0
CAK CAV CAL 123.3 120.0
CAK CAV CAO 119.3 120.0
CAV CAK HAK 121.0 120.0
CAI CAU FAH 119.7 120.0
CAI CAU CAJ 121.8 119.9
CAU CAI HAI 120.4 120.0
FAH CAU CAJ 118.5 120.1
CAU CAJ CAL 120.0 120.0
CAU CAJ HAJ 120.0 120.0
CAJ CAL CAV 117.7 120.1
CAL CAJ HAJ 120.0 120.0
CAJ CAL HAL 121.1 120.0
CAL CAV CAO 117.4 120.0
CAV CAL HAL 121.1 120.0
CAV CAO N7 113.5 109.4
CAV CAO HAO1 108.1 109.4
CAV CAO HAO2 107.2 109.5
CAO N7 C8 123.5 125.3
CAO N7 C5 125.1 125.4
N7 CAO HAO1 108.2 109.5
N7 CAO HAO2 107.2 109.5
C8 N7 C5 111.1 109.3
N7 C8 N9 107.1 109.8
N7 C8 H8 126.4 125.1
N7 C5 C6 135.4 134.1
N7 C5 C4 105.2 107.2
C8 N9 C4 108.7 107.5
C8 N9 C1' 127.4 126.2
N9 C8 H8 126.4 125.1
C6 C5 C4 119.5 118.6
C5 C6 O6 124.4 120.8
C5 C6 N1 117.4 118.3
C5 C4 N3 121.6 119.6
C5 C4 N9 107.8 106.1
O6 C6 N1 118.2 120.9
C6 N1 C2 120.5 120.4
C6 N1 H1 119.8 119.8
N1 C2 N2 118.4 119.0
N1 C2 N3 121.2 121.9
C2 N1 H1 119.7 119.8
N2 C2 N3 120.4 119.1
C2 N2 H2N1 109.5 120.0
C2 N2 H2N2 125.2 119.9
C2 N3 C4 119.8 121.2
N3 C4 N9 130.6 134.2
C4 N9 C1' 123.9 126.3
N9 C1' O4' 110.7 110.4
N9 C1' C2' 108.8 110.3
N9 C1' H1' 108.0 110.3
O4' C1' C2' 106.0 104.8
C1' O4' C4' 109.3 105.2
O4' C1' H1' 110.7 110.4
C1' C2' O2' 110.6 110.6
C1' C2' C3' 101.1 104.0
C2' C1' H1' 112.6 110.4
C1' C2' H2' 114.2 110.5
O4' C4' C3' 103.3 104.8
O4' C4' C5' 102.8 110.3
O4' C4' H4' 120.5 110.4
O2' C2' C3' 110.1 110.5
O2' C2' H2' 106.0 110.5
C2' O2' HA 109.5 114.0
C2' C3' O3' 111.2 110.5
C2' C3' C4' 99.2 104.1
C3' C2' H2' 114.8 110.6
C2' C3' H3' 116.6 110.5
O3' C3' C4' 114.0 110.5
O3' C3' H3' 102.5 110.4
C3' O3' HO3' 109.5 114.0
C3' C4' C5' 117.6 110.3
C3' C4' H4' 106.5 110.4
C4' C3' H3' 113.9 110.7
C4' C5' O5' 111.1 109.5
C5' C4' H4' 107.0 110.4
C4' C5' H5'1 108.9 109.5
C4' C5' H5'2 108.5 109.5
C5' O5' P 122.3 123.0
O5' C5' H5'1 108.9 109.5
O5' C5' H5'2 108.6 109.5
O5' P OP3 106.0 109.4
O5' P OP2 102.8 109.5
O5' P OP1 111.6 109.5
OP3 P OP2 107.3 109.5
OP3 P OP1 112.2 109.5
P OP3 HOP3 109.5 114.0
OP2 P OP1 116.1 109.5
P OP2 HOP2 109.5 114.0
HAO1 CAO HAO2 112.7 109.5
H2N1 N2 H2N2 125.3 120.0
H5'1 C5' H5'2 110.8 109.5

Torsion Angles for MGV

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAI CAK CAV CAL 359.8 359.9
CAI CAK CAV CAO 180.1 180.0
CAV CAK CAI HAK 180.0 180.4
CAK CAI CAU FAH 180.1 180.0
CAK CAI CAU CAJ 358.6 0.0
CAU CAI CAK HAI 180.0 180.0
CAV CAK CAI CAU 1.3 0.0
CAI CAK CAV HAK 180.0 179.6
CAV CAK CAI HAI 181.2 180.0
CAJ CAL CAV CAK 359.3 0.0
CAL CAV CAK CAO 179.7 180.0
CAK CAV CAL HAL 179.3 180.1
CAK CAV CAO N7 285.9 90.0
CAK CAV CAO HAO1 45.9 210.0
CAK CAV CAO HAO2 167.7 330.0
CAU CAI CAK CAV 1.3 0.0
CAU CAI CAK HAK 181.2 179.7
CAK CAI CAU HAI 180.0 180.0
FAH CAU CAI CAJ 181.5 180.0
CAI CAU CAJ CAL 0.5 359.9
CAI CAU CAJ HAJ 180.5 180.0
CAI CAU FAH CAJ 178.5 180.0
FAH CAU CAI HAI 0.1 0.0
FAH CAU CAJ CAL 179.0 180.0
FAH CAU CAJ HAJ 359.0 0.0
CAI CAU CAJ FAH 181.5 180.0
CAJ CAU CAI HAI 178.6 180.0
CAU CAJ CAL CAV 0.5 0.1
CAL CAJ CAU HAJ 180.0 179.9
CAU CAJ CAL HAL 180.6 180.0
CAK CAV CAL CAJ 359.3 0.0
CAU CAJ CAL HAJ 180.0 180.1
CAJ CAL CAV CAO 179.0 180.0
CAV CAL CAJ HAL 180.0 180.1
CAK CAV CAL CAO 180.3 180.0
CAL CAV CAK HAK 179.8 180.3
CAV CAL CAJ HAJ 180.6 180.0
CAJ CAL CAV HAL 180.0 179.9
CAL CAV CAO N7 106.2 270.0
CAL CAV CAO HAO1 226.2 30.0
CAL CAV CAO HAO2 348.0 150.0
CAK CAV CAO CAL 179.7 180.0
CAO CAV CAK HAK 0.1 0.4
CAO CAV CAL HAL 359.0 0.0
CAV CAO N7 C8 88.1 264.9
CAV CAO N7 C5 261.9 84.8
N7 CAO CAV HAO1 240.0 240.0
N7 CAO CAV HAO2 118.2 120.0
HAO1 CAO CAV HAO2 238.2 240.0
CAV CAO N7 HAO1 120.0 119.9
CAV CAO N7 HAO2 241.8 240.0
C8 N7 CAO C5 186.3 180.2
CAO N7 C8 N9 176.1 180.0
CAO N7 C8 H8 356.1 0.1
CAO N7 C5 C6 5.1 0.0
CAO N7 C5 C4 183.7 180.0
HAO1 CAO N7 HAO2 121.8 120.1
CAO N7 C8 C5 174.5 179.8
C8 N7 CAO HAO1 328.1 145.0
C8 N7 CAO HAO2 206.3 24.9
C8 N7 C5 C6 179.6 179.9
C8 N7 C5 C4 358.1 359.8
N7 C8 N9 C4 359.5 359.9
N7 C8 N9 C1' 177.6 180.1
N9 C8 N7 H8 180.0 179.9
CAO N7 C5 C8 185.6 180.2
C5 N7 CAO HAO1 141.9 324.8
C5 N7 CAO HAO2 20.1 204.7
C5 N7 C8 N9 1.5 0.2
C5 N7 C8 H8 181.6 180.3
C6 C5 N7 C4 181.4 180.0
N7 C5 C6 O6 358.5 360.0
N7 C5 C6 N1 178.4 180.0
N7 C5 C4 N3 180.4 180.0
N7 C5 C4 N9 1.5 0.1
N9 C8 N7 C5 1.5 0.2
N7 C8 N9 H8 180.0 180.1
C5 C4 N9 C8 359.4 0.0
N3 C4 N9 C8 180.6 180.1
C4 N9 C8 C1' 181.9 179.8
C8 N9 C1' O4' 13.1 23.5
C8 N9 C1' C2' 257.0 268.1
C8 N9 C1' H1' 134.5 145.8
N7 C5 C6 C4 178.4 180.0
C6 C5 C4 N3 359.3 0.0
C6 C5 C4 N9 180.4 180.1
O6 C6 C5 N1 180.1 180.0
C5 C6 N1 C2 0.6 360.0
C5 C6 N1 H1 180.6 180.0
N7 C5 C4 C6 181.2 180.0
C8 N9 C4 C5 359.4 0.0
C4 C5 C6 O6 180.1 180.0
C4 C5 C6 N1 360.0 0.0
C2 N3 C4 C5 0.9 360.0
N3 C4 C5 N9 178.9 179.9
C5 C4 N9 C1' 181.2 179.8
O6 C6 C5 C4 180.1 180.0
C5 C6 O6 N1 179.9 180.0
O6 C6 N1 C2 180.5 180.0
O6 C6 N1 H1 0.5 0.0
N1 C6 C5 C4 360.0 0.0
C5 C6 N1 O6 180.1 180.0
C6 N1 C2 N2 179.8 180.0
C6 N1 C2 N3 359.5 360.0
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 H1 180.0 180.0
N2 C2 N1 N3 180.3 180.0
N1 C2 N2 H2N1 180.0 360.0
N1 C2 N2 H2N2 360.0 180.0
N1 C2 N3 C4 359.7 0.0
N1 C2 N2 N3 179.7 180.0
N2 C2 N1 H1 359.9 0.0
N2 C2 N3 C4 179.4 180.0
H2N1 N2 C2 H2N2 180.0 179.9
C5 C4 N3 C2 0.9 360.0
N1 C2 N3 N2 180.3 180.0
N3 C2 N1 H1 179.5 180.0
N3 C2 N2 H2N1 0.3 180.0
N3 C2 N2 H2N2 180.3 0.1
C2 N3 C4 N9 179.5 179.9
C8 N9 C4 N3 180.6 180.1
C5 C4 N3 N9 181.4 180.1
N3 C4 N9 C1' 2.4 359.9
C8 N9 C4 C1' 178.2 180.2
C4 N9 C8 H8 179.5 179.8
C5 C4 N9 N3 178.8 179.9
C4 N9 C1' O4' 190.9 203.8
C4 N9 C1' C2' 74.8 88.4
C4 N9 C1' H1' 312.3 326.1
C8 N9 C1' C4 182.2 179.8
C1' N9 C8 H8 357.5 0.0
O4' C1' N9 C2' 116.1 115.4
N9 C1' O4' C4' 246.2 200.7
O4' C1' N9 H1' 238.6 237.7
N9 C1' C2' O2' 205.1 261.5
N9 C1' C2' C3' 88.5 142.8
C2' C1' N9 H1' 122.5 122.3
N9 C1' C2' H2' 324.6 24.1
N9 C1' O4' C2' 242.2 241.2
N9 C1' O4' H1' 119.8 122.2
O4' C1' C2' O2' 86.0 142.6
O4' C1' C2' C3' 329.4 23.9
C2' C1' O4' H1' 237.6 241.0
O4' C1' C2' H2' 205.5 265.3
C1' O4' C4' C3' 24.3 40.6
C1' O4' C4' C5' 147.0 159.3
C1' O4' C4' H4' 265.7 281.6
N9 C1' C2' O4' 119.1 118.9
N9 C1' C2' H1' 240.3 237.8
C2' C1' O4' C4' 4.0 319.5
O4' C1' C2' H1' 121.2 118.9
O2' C2' C1' C3' 116.6 118.7
O2' C2' C1' H2' 240.5 237.4
C1' C2' O2' HA 355.2 180.0
C1' C2' C3' O3' 163.8 118.7
C1' C2' C3' C4' 43.5 0.1
C3' C2' C1' H2' 123.9 118.7
C1' C2' C3' H3' 280.9 241.2
C4' O4' C1' C2' 4.0 319.5
C4' O4' C1' H1' 126.4 78.4
C2' C3' C4' O4' 318.0 335.9
O3' C3' C4' O4' 199.8 217.3
C3' C4' O4' C5' 237.3 241.2
C3' C4' O4' H4' 118.5 118.9
O4' C4' C3' H3' 82.6 94.7
O4' C4' C5' O5' 296.0 66.5
C5' C4' O4' H4' 241.3 237.7
O4' C4' C5' H5'1 56.0 186.5
O4' C4' C5' H5'2 176.7 306.4
C1' C2' O2' C3' 249.1 245.3
O2' C2' C1' H1' 324.8 23.7
C1' C2' O2' H2' 124.4 122.6
O2' C2' C3' O3' 46.8 360.0
O2' C2' C3' C4' 286.5 241.4
C3' C2' O2' H2' 235.3 237.3
O2' C2' C3' H3' 163.9 122.5
C1' C2' C3' O2' 117.0 118.7
C3' C2' C1' H1' 208.2 265.0
C1' C2' C3' H2' 236.5 241.4
O4' C4' C3' C2' 318.0 335.9
O2' C2' C3' H2' 119.5 122.7
C3' C2' O2' HA 106.2 294.7
O3' C3' C2' C4' 120.3 118.6
O3' C3' C2' H3' 243.0 237.5
C2' C3' O3' HO3' 310.1 61.4
C2' C3' C4' C5' 205.7 217.2
C2' C3' C4' H4' 85.8 94.8
C4' C3' C2' H3' 122.7 118.9
O4' C4' C3' O3' 199.8 217.3
C2' C3' O3' C4' 248.9 245.4
O3' C3' C2' H2' 287.3 237.3
C2' C3' O3' H3' 125.3 122.6
O3' C3' C4' C5' 87.5 98.6
O3' C3' C4' H4' 327.6 336.2
C4' C3' O3' H3' 236.4 237.2
O4' C4' C3' C5' 112.3 118.8
O4' C4' C3' H4' 232.2 241.1
C2' C3' C4' O3' 118.2 118.6
C4' C3' C2' H2' 167.1 118.7
C2' C3' C4' H3' 235.4 241.2
O3' C3' C4' H3' 117.2 122.6
C4' C3' O3' HO3' 61.2 176.0
C3' C4' C5' O5' 48.5 181.8
C5' C4' C3' H4' 119.9 122.3
C3' C4' C5' H5'1 168.5 301.8
C3' C4' C5' H5'2 289.2 61.8
O4' C4' C5' C3' 247.4 244.7
O4' C4' C5' H4' 127.8 122.3
C3' C4' C5' H4' 240.4 237.6
C5' C4' C3' H3' 330.3 335.9
C4' C5' O5' P 154.9 180.0
O5' C5' C4' H5'1 240.0 240.0
O5' C5' C4' H5'2 119.3 120.0
H5'1 C5' C4' H5'2 239.3 240.0
O5' C5' C4' H4' 168.2 304.2
C4' C5' O5' H5'1 120.0 120.0
C4' C5' O5' H5'2 240.7 240.0
C5' O5' P OP3 111.3 175.0
C5' O5' P OP2 223.8 295.0
C5' O5' P OP1 348.8 55.0
H5'1 C5' O5' H5'2 120.7 120.0
P O5' C5' H5'1 34.9 60.0
P O5' C5' H5'2 274.2 300.0
OP3 P O5' OP2 247.6 240.0
OP3 P O5' OP1 122.5 120.0
O5' P OP3 HOP3 344.6 180.0
OP2 P O5' OP1 234.9 240.0
O5' P OP2 HOP2 115.2 300.0
O5' P OP3 OP2 109.3 120.0
O5' P OP3 OP1 237.9 240.0
OP2 P OP3 OP1 128.7 120.0
OP3 P OP2 HOP2 226.7 60.0
O5' P OP2 OP3 248.5 240.0
O5' P OP2 OP1 122.1 120.0
OP3 P OP2 OP1 233.6 240.0
OP2 P OP3 HOP3 235.4 60.0
O5' P OP1 OP3 118.8 119.9
O5' P OP1 OP2 242.7 240.0
OP3 P OP1 OP2 123.9 120.0
OP1 P OP3 HOP3 106.7 300.0
OP1 P OP2 HOP2 353.1 180.0
CAI CAK HAK CAV 180.0 180.4
HAK CAK CAI CAU 181.2 179.7
HAK CAK CAI HAI 1.2 359.6
HAK CAK CAV CAL 179.8 180.3
HAK CAK CAV CAO 0.1 0.4
HAI CAI CAK CAV 181.2 180.0
CAK CAI HAI CAU 180.0 180.0
HAI CAI CAK HAK 1.2 359.6
HAI CAI CAU FAH 0.1 0.0
HAI CAI CAU CAJ 178.6 180.0
CAU CAJ HAJ CAL 180.0 179.9
HAJ CAJ CAL CAV 180.6 180.0
HAJ CAJ CAL HAL 0.6 359.9
CAJ CAL HAL CAV 180.0 180.1
HAL CAL CAJ HAJ 0.6 359.9
HAL CAL CAV CAO 359.0 0.0
CAV CAO HAO1 N7 236.7 240.1
CAV CAO HAO1 HAO2 118.3 120.0
HAO1 CAO N7 C8 328.1 145.0
HAO1 CAO N7 C5 141.9 324.8
N7 CAO HAO1 HAO2 241.7 239.9
CAV CAO HAO2 N7 122.2 120.0
CAV CAO HAO2 HAO1 241.1 240.0
HAO2 CAO N7 C8 206.3 24.9
HAO2 CAO N7 C5 20.1 204.7
N7 CAO HAO2 HAO1 118.9 120.1
H8 C8 N7 C5 181.6 180.3
N7 C8 H8 N9 180.0 179.9
H8 C8 N9 C4 179.5 179.8
H8 C8 N9 C1' 357.5 0.0
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N2 359.9 0.0
H1 N1 C2 N3 179.5 180.0
H2N1 N2 C2 N3 0.3 180.0
C2 N2 H2N1 H2N2 180.0 180.1
H2N2 N2 C2 N3 180.3 0.1
C2 N2 H2N2 H2N1 180.0 179.9
N9 C1' H1' O4' 238.6 237.7
N9 C1' H1' C2' 120.1 122.2
O4' C1' H1' C2' 241.6 244.5
H1' C1' O4' C4' 126.4 78.4
H1' C1' C2' O2' 324.8 23.7
H1' C1' C2' C3' 208.2 265.0
H1' C1' C2' H2' 84.3 146.3
C1' C2' H2' O2' 237.9 237.3
C1' C2' H2' C3' 116.2 114.6
H2' C2' C1' H1' 84.3 146.3
O2' C2' H2' C3' 238.3 237.3
H2' C2' O2' HA 230.9 57.4
H2' C2' C3' O3' 287.3 237.3
H2' C2' C3' C4' 167.1 118.7
H2' C2' C3' H3' 44.4 359.9
O4' C4' H4' C3' 116.9 115.4
O4' C4' H4' C5' 243.4 237.7
C3' C4' H4' C5' 126.5 122.3
H4' C4' C3' H3' 210.4 213.6
H4' C4' C5' O5' 168.2 304.2
H4' C4' C5' H5'1 288.2 64.1
H4' C4' C5' H5'2 48.9 184.1
HA O2' C2' C3' 106.2 294.7
HA O2' C2' H2' 230.9 57.4
C2' C3' H3' O3' 238.3 237.4
C2' C3' H3' C4' 114.7 114.8
H3' C3' C2' H2' 44.4 359.9
O3' C3' H3' C4' 236.4 237.4
H3' C3' O3' HO3' 184.8 298.8
H3' C3' C4' C5' 330.3 335.9
H3' C3' C4' H4' 210.4 213.6
HO3' O3' C3' C4' 61.2 176.0
HO3' O3' C3' H3' 184.8 298.8
C4' C5' H5'1 O5' 238.6 240.0
H5'1 C5' C4' H4' 288.2 64.1
C4' C5' H5'1 H5'2 119.3 120.0
H5'1 C5' O5' P 34.9 60.0
O5' C5' H5'1 H5'2 240.7 240.0
C4' C5' H5'2 O5' 120.9 120.0
H5'2 C5' C4' H4' 48.9 184.1
C4' C5' H5'2 H5'1 240.4 240.0
H5'2 C5' O5' P 274.2 300.0
O5' C5' H5'2 H5'1 119.5 120.0
HOP3 OP3 P OP2 235.4 60.0
HOP3 OP3 P OP1 106.7 300.0
HOP2 OP2 P OP1 353.1 180.0