PDB Chemical Component MGT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MGT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.489 1.479
PG O2G 1.465 1.610
PG O3G 1.620 1.609
PG O3B 1.631 1.610
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.966
O3B PB 1.664 1.609
PB O1B 1.490 1.479
PB O2B 1.487 1.610
PB O3A 1.577 1.610
O2B HOB2 0.949 0.967
O3A PA 1.647 1.610
PA O1A 1.480 1.479
PA O2A 1.455 1.609
PA O5' 1.616 1.610
O2A HOA2 0.950 0.968
O5' C5' 1.438 1.428
C5' C4' 1.535 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.090
C4' O4' 1.475 1.444
C4' C3' 1.569 1.544
C4' H4' 1.114 1.090
O4' C1' 1.413 1.444
C3' O3' 1.445 1.429
C3' C2' 1.477 1.547
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.463 1.429
C2' C1' 1.567 1.543
C2' H2' 1.116 1.090
O2' HO2' 0.957 0.967
C1' N9 1.510 1.464
C1' H1' 1.115 1.090
N9 C8 1.394 1.467
N9 C4 1.375 1.385
C8 N7 1.298 1.468
C8 H81 1.114 1.090
C8 H82 1.115 1.090
N7 CM7 1.430 1.466
N7 C5 1.400 1.411
CM7 HM71 1.115 1.089
CM7 HM72 1.114 1.090
CM7 HM73 1.116 1.090
C5 C6 1.437 1.402
C5 C4 1.369 1.386
C6 O6 1.225 1.222
C6 N1 1.355 1.349
N1 C2 1.354 1.361
N1 HN1 1.014 0.970
C2 N2 1.296 1.372
C2 N3 1.320 1.314
N2 HN21 1.006 0.970
N2 HN22 1.013 0.970
N3 C4 1.337 1.342

Bond Angles for MGT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 119.2 109.4
O1G PG O3G 100.4 109.5
O1G PG O3B 115.9 109.4
O2G PG O3G 108.3 109.5
O2G PG O3B 107.1 109.5
PG O2G HOG2 119.3 106.8
O3G PG O3B 104.4 109.5
PG O3G HOG3 100.4 106.8
PG O3B PB 137.9 106.8
O3B PB O1B 105.4 109.5
O3B PB O2B 109.2 109.5
O3B PB O3A 111.5 109.5
O1B PB O2B 118.9 109.5
O1B PB O3A 106.6 109.4
O2B PB O3A 105.3 109.5
PB O2B HOB2 109.2 106.8
PB O3A PA 127.9 106.8
O3A PA O1A 109.1 109.5
O3A PA O2A 115.9 109.5
O3A PA O5' 93.4 109.5
O1A PA O2A 119.4 109.4
O1A PA O5' 106.8 109.5
O2A PA O5' 108.7 109.5
PA O2A HOA2 115.9 106.8
PA O5' C5' 127.0 106.8
O5' C5' C4' 110.7 109.5
O5' C5' H5'1 111.7 109.5
O5' C5' H5'2 111.8 109.5
C4' C5' H5'1 111.8 109.4
C4' C5' H5'2 111.8 109.4
C5' C4' O4' 110.4 110.4
C5' C4' C3' 110.8 110.5
C5' C4' H4' 107.8 110.3
H5'1 C5' H5'2 98.7 109.5
O4' C4' C3' 109.0 104.8
O4' C4' H4' 109.7 110.4
C4' O4' C1' 103.9 105.3
C3' C4' H4' 109.2 110.4
C4' C3' O3' 118.4 110.6
C4' C3' C2' 98.9 104.0
C4' C3' H3' 108.7 110.5
O4' C1' C2' 109.3 104.9
O4' C1' N9 105.0 110.4
O4' C1' H1' 115.2 110.3
O3' C3' C2' 101.7 110.5
O3' C3' H3' 106.2 110.5
C3' O3' HO3' 118.4 106.8
C2' C3' H3' 123.8 110.6
C3' C2' O2' 107.2 110.5
C3' C2' C1' 101.0 104.0
C3' C2' H2' 117.2 110.5
O2' C2' C1' 112.4 110.8
O2' C2' H2' 106.7 110.4
C2' O2' HO2' 105.8 106.9
C1' C2' H2' 112.4 110.4
C2' C1' N9 116.5 110.4
C2' C1' H1' 103.3 110.3
N9 C1' H1' 107.8 110.3
C1' N9 C8 132.0 126.1
C1' N9 C4 123.7 126.0
C8 N9 C4 104.3 107.8
N9 C8 N7 113.8 105.6
N9 C8 H81 110.6 110.2
N9 C8 H82 110.6 110.2
N9 C4 C5 107.8 110.1
N9 C4 N3 124.4 130.6
N7 C8 H81 110.6 110.3
N7 C8 H82 110.6 110.1
C8 N7 CM7 129.9 126.7
C8 N7 C5 104.7 106.7
H81 C8 H82 99.7 110.3
CM7 N7 C5 125.4 126.6
N7 CM7 HM71 130.0 109.4
N7 CM7 HM72 105.1 109.4
N7 CM7 HM73 105.1 109.5
N7 C5 C6 131.8 131.2
N7 C5 C4 109.5 109.8
HM71 CM7 HM72 105.1 109.5
HM71 CM7 HM73 105.0 109.5
HM72 CM7 HM73 104.0 109.5
C6 C5 C4 118.7 119.0
C5 C6 O6 133.8 120.6
C5 C6 N1 111.8 118.8
C5 C4 N3 127.8 119.4
O6 C6 N1 114.3 120.6
C6 N1 C2 124.8 120.0
C6 N1 HN1 113.5 120.0
C2 N1 HN1 121.7 119.9
N1 C2 N2 116.2 119.2
N1 C2 N3 125.1 121.5
N2 C2 N3 118.7 119.2
C2 N2 HN21 123.7 120.0
C2 N2 HN22 116.4 120.0
C2 N3 C4 111.8 121.3
HN21 N2 HN22 119.9 120.0

Torsion Angles for MGT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 242.1 120.0
O2G PG O1G O3B 130.3 240.0
O1G PG O2G HOG2 180.0 300.0
O3G PG O1G O3B 248.2 120.0
O1G PG O3G HOG3 180.0 180.0
O1G PG O3B PB 29.7 60.0
O1G PG O2G O3G 113.7 240.0
O1G PG O2G O3B 225.9 119.9
O3G PG O2G O3B 112.1 240.0
O2G PG O3G HOG3 305.7 60.0
O2G PG O3B PB 253.8 180.0
O1G PG O3G O2G 234.3 120.0
O1G PG O3G O3B 120.4 240.0
O2G PG O3G O3B 246.1 120.0
O3G PG O2G HOG2 66.2 60.0
O3G PG O3B PB 139.1 300.0
O1G PG O3B O2G 135.9 240.1
O1G PG O3B O3G 250.6 120.1
O2G PG O3B O3G 114.7 240.0
O3B PG O2G HOG2 314.1 180.0
O3B PG O3G HOG3 59.6 300.0
PG O3B PB O1B 199.8 300.0
PG O3B PB O2B 328.6 60.0
PG O3B PB O3A 84.5 180.0
HOG2 O2G PG O3G 66.2 60.0
HOG2 O2G PG O3B 314.1 180.0
HOG3 O3G PG O3B 59.6 300.0
O1B PB O3B O2B 231.2 240.0
O1B PB O3B O3A 115.3 120.0
O2B PB O3B O3A 244.1 240.0
O3B PB O2B HOB2 180.0 60.1
O3B PB O3A PA 53.4 180.0
O3B PB O1B O2B 122.8 120.0
O3B PB O1B O3A 241.4 240.0
O2B PB O1B O3A 118.6 120.0
O1B PB O2B HOB2 300.9 180.1
O1B PB O3A PA 298.9 60.0
O3B PB O2B O1B 239.1 240.0
O3B PB O2B O3A 119.8 120.0
O1B PB O2B O3A 240.7 240.0
O2B PB O3A PA 171.7 300.0
O3B PB O3A O1B 114.5 120.0
O3B PB O3A O2B 241.7 240.0
O1B PB O3A O2B 127.1 120.0
O3A PB O2B HOB2 60.2 300.0
PB O3A PA O1A 251.8 300.0
PB O3A PA O2A 30.0 60.0
PB O3A PA O5' 142.7 180.0
HOB2 O2B PB O3A 60.2 300.0
O1A PA O3A O2A 221.7 240.1
O1A PA O3A O5' 109.1 120.0
O2A PA O3A O5' 247.3 240.0
O3A PA O2A HOA2 180.0 60.0
O3A PA O5' C5' 278.7 180.0
O3A PA O1A O2A 136.6 120.0
O3A PA O1A O5' 260.2 240.0
O2A PA O1A O5' 123.7 120.0
O1A PA O2A HOA2 313.8 180.0
O1A PA O5' C5' 167.5 60.0
O3A PA O2A O1A 226.2 240.0
O3A PA O2A O5' 103.5 120.0
O1A PA O2A O5' 237.3 240.0
O2A PA O5' C5' 37.4 300.0
O3A PA O5' O1A 111.2 120.0
O3A PA O5' O2A 241.2 240.0
O1A PA O5' O2A 130.1 120.0
O5' PA O2A HOA2 76.5 300.0
PA O5' C5' C4' 215.0 180.0
PA O5' C5' H5'1 340.2 60.0
PA O5' C5' H5'2 89.7 300.0
HOA2 O2A PA O5' 76.5 300.0
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 309.1 61.4
O5' C5' C4' C3' 70.0 176.9
O5' C5' C4' H4' 189.4 299.2
H5'1 C5' O5' H5'2 250.5 120.1
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 239.2 244.5
O4' C4' C5' H4' 119.8 122.2
C5' C4' O4' C1' 134.5 159.5
C3' C4' C5' H4' 240.6 237.7
C5' C4' C3' O3' 95.0 98.3
C5' C4' C3' C2' 203.5 217.0
C5' C4' C3' H3' 333.9 335.7
O5' C5' H5'1 C4' 235.4 120.0
O5' C5' H5'1 H5'2 117.7 239.9
C4' C5' H5'1 H5'2 242.3 119.9
H5'1 C5' C4' O4' 183.9 181.5
H5'1 C5' C4' C3' 304.7 297.0
H5'1 C5' C4' H4' 64.1 59.3
O5' C5' H5'2 C4' 124.7 240.0
O5' C5' H5'2 H5'1 242.4 120.1
C4' C5' H5'2 H5'1 117.7 240.1
H5'2 C5' C4' O4' 74.4 301.5
H5'2 C5' C4' C3' 195.2 56.9
H5'2 C5' C4' H4' 314.6 179.2
O4' C4' C5' H5'1 183.9 181.5
O4' C4' C5' H5'2 74.4 301.5
C5' C4' O4' C3' 121.9 119.0
C5' C4' O4' H4' 241.4 237.8
C3' C4' O4' H4' 119.5 118.8
O4' C4' C3' O3' 216.7 217.3
O4' C4' C3' C2' 325.2 336.0
O4' C4' C3' H3' 95.5 94.7
C4' O4' C1' C2' 14.0 319.6
C4' O4' C1' N9 248.2 200.6
C4' O4' C1' H1' 129.8 78.4
C3' C4' C5' H5'1 304.7 297.0
C3' C4' C5' H5'2 195.2 56.9
C5' C4' C3' O4' 238.4 241.1
C5' C4' C3' H4' 118.6 122.3
O4' C4' C3' H4' 240.2 241.2
C3' C4' O4' C1' 12.6 40.5
O3' C3' C4' C2' 251.5 241.3
O3' C3' C4' H3' 121.1 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 229.6 241.3
C4' C3' C2' O2' 282.0 241.1
C4' C3' C2' C1' 39.8 0.1
C4' C3' C2' H2' 162.2 118.7
H4' C4' C5' H5'1 64.1 59.3
H4' C4' C5' H5'2 314.6 179.2
C5' C4' H4' O4' 120.2 122.2
C5' C4' H4' C3' 239.6 237.6
O4' C4' H4' C3' 119.3 115.4
H4' C4' O4' C1' 253.2 281.7
H4' C4' C3' O3' 336.4 336.1
H4' C4' C3' C2' 84.9 94.8
H4' C4' C3' H3' 215.3 213.5
C1' O4' C4' C3' 12.6 40.5
C1' O4' C4' H4' 253.2 281.7
C3' C2' C1' O4' 323.4 23.8
O2' C2' C1' O4' 77.3 142.6
O4' C1' C2' H2' 197.7 265.3
C2' C1' O4' N9 125.8 119.0
C2' C1' O4' H1' 244.2 241.2
N9 C1' O4' H1' 118.4 122.2
O4' C1' N9 C8 71.4 237.1
O4' C1' N9 C4 253.3 57.1
O3' C3' C4' H4' 336.4 336.1
C4' C3' O3' C2' 106.9 114.7
C4' C3' O3' H3' 237.6 237.4
C2' C3' O3' H3' 130.7 122.7
O3' C3' C2' O2' 43.6 359.8
O3' C3' C2' C1' 161.3 118.8
O3' C3' C2' H2' 283.8 237.4
C2' C3' C4' H4' 84.9 94.8
C4' C3' C2' O3' 238.4 241.3
C4' C3' C2' H3' 119.7 118.6
O4' C1' C2' C3' 323.4 23.8
O3' C3' C2' H3' 241.3 237.4
C2' C3' O3' HO3' 73.1 65.4
O2' C2' C3' C1' 242.2 241.0
O2' C2' C3' H2' 119.8 122.5
C3' C2' O2' HO2' 322.3 298.6
C1' C2' C3' H2' 237.6 241.5
C3' C2' C1' N9 82.2 142.8
C3' C2' C1' H1' 200.2 265.0
H3' C3' C4' H4' 215.3 213.5
C4' C3' H3' O3' 128.4 122.7
C4' C3' H3' C2' 245.0 245.4
O3' C3' H3' C2' 116.6 122.7
H3' C3' O3' HO3' 302.4 302.7
H3' C3' C2' O2' 162.3 122.5
H3' C3' C2' C1' 280.1 241.5
H3' C3' C2' H2' 42.5 0.0
HO3' O3' C3' C2' 73.1 65.4
HO3' O3' C3' H3' 302.4 302.7
O4' C1' C2' O2' 77.3 142.6
O2' C2' C3' H3' 162.3 122.5
C3' C2' O2' C1' 110.1 114.8
C3' C2' O2' H2' 233.7 237.5
C1' C2' O2' H2' 123.6 122.7
O2' C2' C1' N9 196.1 261.5
O2' C2' C1' H1' 314.1 23.8
O4' C1' C2' N9 241.2 241.0
O4' C1' C2' H1' 123.2 118.8
C1' C2' C3' H3' 280.1 241.5
C3' C2' C1' O2' 246.1 241.2
C3' C2' C1' H2' 125.7 118.5
O2' C2' C1' H2' 239.6 237.3
C1' C2' O2' HO2' 212.2 183.8
N9 C1' C2' H1' 242.0 237.8
C2' C1' N9 C8 310.2 121.5
C2' C1' N9 C4 132.2 301.5
H2' C2' C3' H3' 42.5 0.0
C3' C2' H2' O2' 120.0 122.5
C3' C2' H2' C1' 243.7 245.5
O2' C2' H2' C1' 123.6 122.9
H2' C2' O2' HO2' 88.5 61.1
H2' C2' C1' N9 316.6 24.2
H2' C2' C1' H1' 74.5 146.4
HO2' O2' C2' C1' 212.2 183.8
HO2' O2' C2' H2' 88.5 61.1
O4' C1' N9 C2' 121.1 115.5
O4' C1' N9 H1' 236.7 237.8
N9 C1' C2' H2' 316.6 24.2
C2' C1' N9 H1' 115.5 122.2
C8 N9 C1' C4 178.0 180.0
C1' N9 C8 N7 181.7 180.0
C1' N9 C8 H81 307.0 60.9
C1' N9 C8 H82 56.4 299.0
C1' N9 C4 C5 178.6 179.7
C1' N9 C4 N3 359.3 360.0
O4' C1' H1' C2' 240.8 244.5
O4' C1' H1' N9 116.9 122.2
H1' C1' C2' H2' 74.5 146.4
C2' C1' H1' N9 236.1 237.7
H1' C1' N9 C8 194.7 359.3
H1' C1' N9 C4 16.6 179.3
C8 N9 C1' H1' 194.7 359.3
C1' N9 C8 C4 181.7 180.0
C8 N9 C4 C5 0.1 359.7
C8 N9 C4 N3 180.8 180.0
N7 C8 N9 H81 234.7 119.1
N7 C8 N9 H82 125.2 241.1
N9 C8 N7 CM7 180.8 180.0
N9 C8 N7 C5 359.9 0.2
H81 C8 N9 H82 250.5 121.9
C4 N9 C1' H1' 16.6 179.3
C1' N9 C4 C8 178.5 180.0
C4 N9 C8 N7 0.0 0.0
C4 N9 C8 H81 125.3 240.9
C4 N9 C8 H82 234.8 119.0
N7 C5 C4 N9 359.9 0.4
C6 C5 C4 N9 180.8 180.0
C5 C4 N9 N3 179.3 179.8
C2 N3 C4 N9 178.8 180.2
N7 C8 N9 C4 0.0 0.0
N9 C8 N7 H81 125.3 240.9
N9 C8 N7 H82 234.7 119.0
H81 C8 N7 H82 109.4 238.1
CM7 N7 C8 C5 180.9 179.8
C8 N7 CM7 HM71 179.9 179.9
C8 N7 CM7 HM72 305.3 299.9
C8 N7 CM7 HM73 54.7 59.9
C8 N7 C5 C6 179.1 180.1
C8 N7 C5 C4 0.1 359.7
H81 C8 N9 C4 125.3 240.9
N9 C8 H81 N7 232.9 116.2
N9 C8 H81 H82 116.5 238.1
N7 C8 H81 H82 243.6 121.9
H81 C8 N7 CM7 55.5 299.1
H81 C8 N7 C5 234.6 119.3
H82 C8 N9 C4 234.8 119.0
N9 C8 H82 N7 127.0 243.9
N9 C8 H82 H81 243.5 121.9
N7 C8 H82 H81 116.5 238.0
H82 C8 N7 CM7 306.1 61.0
H82 C8 N7 C5 125.2 241.2
CM7 N7 C8 H81 55.5 299.1
CM7 N7 C8 H82 306.1 61.0
C8 N7 CM7 C5 178.9 180.3
CM7 N7 C5 C6 358.2 0.3
CM7 N7 C5 C4 179.3 179.9
HM71 CM7 N7 HM72 234.6 240.0
HM71 CM7 N7 HM73 125.2 120.0
HM72 CM7 N7 HM73 250.5 240.0
N9 C4 C5 N7 359.9 0.4
C5 N7 C8 H81 234.6 119.3
C5 N7 C8 H82 125.2 241.2
C8 N7 C5 CM7 180.9 179.8
C5 N7 CM7 HM71 1.0 359.7
C5 N7 CM7 HM72 126.4 119.7
C5 N7 CM7 HM73 235.8 239.7
C6 C5 N7 C4 178.9 180.5
N7 C5 C6 O6 358.5 359.5
N7 C5 C6 N1 181.3 179.5
N7 C5 C4 N3 179.1 180.2
HM71 CM7 N7 C5 1.0 359.7
N7 CM7 HM71 HM72 125.4 120.0
N7 CM7 HM71 HM73 234.8 240.0
HM72 CM7 HM71 HM73 109.4 120.1
HM72 CM7 N7 C5 126.4 119.7
N7 CM7 HM72 HM71 220.3 240.0
N7 CM7 HM72 HM73 110.2 120.0
HM71 CM7 HM72 HM73 249.9 239.9
HM73 CM7 N7 C5 235.8 239.7
N7 CM7 HM73 HM71 139.6 120.0
N7 CM7 HM73 HM72 249.8 240.0
HM71 CM7 HM73 HM72 110.2 120.1
N9 C4 C5 C6 180.8 180.0
N7 C5 C6 C4 181.1 179.5
C6 C5 C4 N3 0.0 359.8
O6 C6 C5 N1 177.2 180.0
C5 C6 N1 C2 359.8 0.0
C5 C6 N1 HN1 178.0 180.0
N9 C4 C5 N3 180.7 180.2
N7 C5 C4 C6 179.1 180.4
C4 C5 C6 O6 177.4 180.0
C4 C5 C6 N1 0.2 0.0
C2 N3 C4 C5 359.6 0.4
O6 C6 C5 C4 177.4 180.0
C5 C6 O6 N1 182.9 180.0
O6 C6 N1 C2 182.1 180.0
O6 C6 N1 HN1 0.2 360.0
N1 C6 C5 C4 0.2 0.0
C5 C6 N1 O6 177.8 180.0
C2 N1 C6 HN1 181.9 180.1
C6 N1 C2 N2 177.2 180.0
C6 N1 C2 N3 359.8 0.2
C6 N1 C2 HN1 178.0 179.9
N2 C2 N1 N3 177.4 179.8
N1 C2 N2 HN21 3.8 180.0
N1 C2 N2 HN22 184.4 0.0
N1 C2 N3 C4 0.4 359.6
C6 N1 HN1 C2 181.8 180.1
HN1 N1 C2 N2 359.2 0.0
HN1 N1 C2 N3 181.8 180.2
N2 C2 N1 HN1 359.2 0.0
N1 C2 N2 N3 182.5 180.2
N2 C2 N3 C4 183.1 179.8
HN21 N2 C2 HN22 179.4 180.0
N9 C4 N3 C2 178.8 180.2
C5 C4 N3 C2 359.6 0.4
N3 C2 N1 HN1 181.8 180.2
N1 C2 N3 N2 177.3 179.8
N3 C2 N2 HN21 181.3 359.8
N3 C2 N2 HN22 2.0 179.8
HN21 N2 C2 N3 181.3 359.8
C2 N2 HN21 HN22 180.7 180.0
HN22 N2 C2 N3 2.0 179.8
C2 N2 HN22 HN21 179.4 180.0
N9 C4 N3 C5 179.1 179.8