PDB Chemical Component MGQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MGQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAK CAI 1.395 1.382
CAK CAU 1.395 1.382
CAI CAH 1.396 1.383
CAH CAJ 1.386 1.382
CAJ CAL 1.400 1.383
CAL CAU 1.389 1.382
CAU CAO 1.532 1.507
CAO N7 1.461 1.464
N7 C8 1.326 1.301
N7 C5 1.338 1.356
C8 N9 1.340 1.364
C5 C6 1.408 1.415
C5 C4 1.406 1.399
C6 O6 1.242 1.219
C6 N1 1.403 1.352
N1 C2 1.399 1.363
C2 N2 1.336 1.372
C2 N3 1.343 1.314
N3 C4 1.343 1.338
C4 N9 1.330 1.368
N9 C1' 1.487 1.465
C1' O4' 1.427 1.444
C1' C2' 1.513 1.545
O4' C4' 1.422 1.443
C2' O2' 1.395 1.430
C2' C3' 1.523 1.545
C3' O3' 1.433 1.428
C3' C4' 1.529 1.545
C4' C5' 1.531 1.530
C5' O5' 1.427 1.429
O5' PBE 1.636 1.610
PBE OP2 1.611 1.610
PBE OP3 1.639 1.610
PBE OP1 1.472 1.479
CAK HAK 1.080 1.080
CAI HAI 1.080 1.080
CAH HAH 1.080 1.080
CAJ HAJ 1.080 1.080
CAL HAL 1.080 1.080
CAO HAO1 1.100 1.091
CAO HAO2 1.100 1.090
C8 H8 1.080 1.079
N1 H1 1.000 0.969
N2 H2N1 1.000 0.970
N2 H2N2 1.000 0.970
C1' H1' 1.100 1.089
C2' H2' 1.100 1.090
C4' H4' 1.100 1.090
O2' HA 0.950 0.967
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.966
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967

Bond Angles for MGQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAI CAK CAU 119.4 120.0
CAK CAI CAH 120.7 120.0
CAI CAK HAK 120.3 120.0
CAK CAI HAI 119.6 120.1
CAK CAU CAL 119.9 120.0
CAK CAU CAO 119.9 120.0
CAU CAK HAK 120.3 120.0
CAI CAH CAJ 119.6 120.0
CAH CAI HAI 119.6 120.0
CAI CAH HAH 120.2 120.0
CAH CAJ CAL 119.9 120.0
CAJ CAH HAH 120.2 120.0
CAH CAJ HAJ 120.0 120.0
CAJ CAL CAU 120.4 120.0
CAL CAJ HAJ 120.1 120.0
CAJ CAL HAL 119.8 120.0
CAL CAU CAO 120.1 120.0
CAU CAL HAL 119.8 120.0
CAU CAO N7 113.5 109.5
CAU CAO HAO1 108.1 109.5
CAU CAO HAO2 107.2 109.5
CAO N7 C8 121.9 125.4
CAO N7 C5 127.4 125.3
N7 CAO HAO1 108.1 109.5
N7 CAO HAO2 107.2 109.5
C8 N7 C5 110.6 109.3
N7 C8 N9 108.3 109.8
N7 C8 H8 125.8 125.1
N7 C5 C6 136.6 134.1
N7 C5 C4 104.6 107.3
C8 N9 C4 108.2 107.5
C8 N9 C1' 127.1 126.3
N9 C8 H8 125.9 125.1
C6 C5 C4 118.8 118.6
C5 C6 O6 124.4 120.8
C5 C6 N1 117.4 118.3
C5 C4 N3 122.3 119.7
C5 C4 N9 108.3 106.1
O6 C6 N1 118.1 120.8
C6 N1 C2 120.6 120.3
C6 N1 H1 119.7 119.8
N1 C2 N2 119.8 119.0
N1 C2 N3 120.9 121.9
C2 N1 H1 119.7 119.9
N2 C2 N3 119.3 119.1
C2 N2 H2N1 109.6 120.0
C2 N2 H2N2 125.2 120.0
C2 N3 C4 119.9 121.2
N3 C4 N9 129.4 134.2
C4 N9 C1' 124.7 126.3
N9 C1' O4' 106.9 110.4
N9 C1' C2' 109.2 110.4
N9 C1' H1' 110.3 110.4
O4' C1' C2' 106.1 104.8
C1' O4' C4' 109.5 105.3
O4' C1' H1' 113.1 110.4
C1' C2' O2' 106.5 110.5
C1' C2' C3' 101.5 104.1
C2' C1' H1' 111.0 110.5
C1' C2' H2' 116.3 110.5
O4' C4' C3' 101.4 104.8
O4' C4' C5' 99.5 110.4
O4' C4' H4' 122.9 110.4
O2' C2' C3' 109.6 110.5
O2' C2' H2' 109.0 110.4
C2' O2' HA 109.5 114.0
C2' C3' O3' 111.0 110.5
C2' C3' C4' 99.6 104.1
C3' C2' H2' 113.5 110.7
C2' C3' H3' 115.9 110.5
O3' C3' C4' 112.6 110.6
O3' C3' H3' 103.8 110.5
C3' O3' HO3' 109.5 114.0
C3' C4' C5' 116.8 110.4
C3' C4' H4' 107.5 110.3
C4' C3' H3' 114.4 110.6
C4' C5' O5' 109.1 109.5
C5' C4' H4' 109.1 110.4
C4' C5' H5'1 109.6 109.5
C4' C5' H5'2 109.7 109.4
C5' O5' PBE 124.2 123.0
O5' C5' H5'1 109.6 109.5
O5' C5' H5'2 109.7 109.4
O5' PBE OP2 102.7 109.5
O5' PBE OP3 104.3 109.4
O5' PBE OP1 117.3 109.5
OP2 PBE OP3 110.9 109.5
OP2 PBE OP1 107.6 109.5
PBE OP2 HOP2 109.5 114.0
OP3 PBE OP1 113.5 109.5
PBE OP3 HOP3 109.5 114.0
HAO1 CAO HAO2 112.7 109.4
H2N1 N2 H2N2 125.2 120.0
H5'1 C5' H5'2 109.2 109.4

Torsion Angles for MGQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAI CAK CAU CAL 0.2 0.0
CAI CAK CAU CAO 177.3 180.0
CAU CAK CAI HAK 180.0 180.3
CAK CAI CAH CAJ 359.2 360.0
CAH CAI CAK HAI 180.0 180.0
CAK CAI CAH HAH 179.2 180.0
CAU CAK CAI CAH 0.5 0.0
CAI CAK CAU HAK 180.0 179.7
CAU CAK CAI HAI 180.5 180.0
CAJ CAL CAU CAK 359.4 359.9
CAL CAU CAK CAO 182.9 180.0
CAK CAU CAL HAL 179.4 180.1
CAK CAU CAO N7 106.6 89.9
CAK CAU CAO HAO1 226.6 210.0
CAK CAU CAO HAO2 348.3 329.9
CAH CAI CAK CAU 0.5 0.0
CAH CAI CAK HAK 180.5 179.7
CAK CAI CAH HAI 180.0 180.0
CAI CAH CAJ CAL 0.4 360.0
CAJ CAH CAI HAH 180.0 180.0
CAI CAH CAJ HAJ 180.4 179.9
CAJ CAH CAI HAI 179.2 180.0
CAI CAH CAJ HAH 180.0 180.0
CAH CAJ CAL CAU 0.3 0.1
CAL CAJ CAH HAJ 180.0 180.1
CAH CAJ CAL HAL 180.3 179.9
CAK CAU CAL CAJ 359.4 359.9
CAL CAJ CAH HAH 180.4 180.0
CAH CAJ CAL HAJ 180.0 179.9
CAJ CAL CAU CAO 182.3 180.0
CAU CAL CAJ HAL 180.0 180.1
CAK CAU CAL CAO 177.1 180.0
CAL CAU CAK HAK 180.2 180.3
CAU CAL CAJ HAJ 180.3 180.1
CAJ CAL CAU HAL 180.0 179.9
CAL CAU CAO N7 283.7 269.9
CAL CAU CAO HAO1 43.7 30.0
CAL CAU CAO HAO2 165.5 149.9
CAK CAU CAO CAL 182.9 180.0
CAO CAU CAK HAK 357.3 0.3
CAO CAU CAL HAL 2.3 0.1
CAU CAO N7 C8 90.4 265.0
CAU CAO N7 C5 267.3 84.7
N7 CAO CAU HAO1 240.0 239.9
N7 CAO CAU HAO2 118.2 120.0
HAO1 CAO CAU HAO2 238.2 240.1
CAU CAO N7 HAO1 120.0 120.0
CAU CAO N7 HAO2 241.8 240.0
C8 N7 CAO C5 183.1 180.3
CAO N7 C8 N9 178.7 180.0
CAO N7 C8 H8 358.7 360.0
CAO N7 C5 C6 1.5 0.1
CAO N7 C5 C4 181.1 180.0
HAO1 CAO N7 HAO2 121.8 120.0
CAO N7 C8 C5 177.4 179.7
C8 N7 CAO HAO1 330.4 145.0
C8 N7 CAO HAO2 208.6 25.0
C8 N7 C5 C6 178.7 179.8
C8 N7 C5 C4 358.3 359.8
N7 C8 N9 C4 359.7 359.9
N7 C8 N9 C1' 178.7 180.0
N9 C8 N7 H8 180.0 180.0
CAO N7 C5 C8 182.8 180.3
C5 N7 CAO HAO1 147.3 324.7
C5 N7 CAO HAO2 25.5 204.7
C5 N7 C8 N9 1.3 0.2
C5 N7 C8 H8 181.3 180.2
C6 C5 N7 C4 180.4 180.0
N7 C5 C6 O6 1.0 359.9
N7 C5 C6 N1 178.9 180.0
N7 C5 C4 N3 179.8 180.0
N7 C5 C4 N9 1.5 0.1
N9 C8 N7 C5 1.3 0.2
N7 C8 N9 H8 180.0 180.0
C5 C4 N9 C8 359.2 0.0
N3 C4 N9 C8 181.1 180.1
C4 N9 C8 C1' 181.0 179.9
C8 N9 C1' O4' 12.8 23.5
C8 N9 C1' C2' 258.4 268.2
C8 N9 C1' H1' 136.2 145.8
N7 C5 C6 C4 179.5 180.0
C6 C5 C4 N3 359.4 360.0
C6 C5 C4 N9 181.2 180.1
O6 C6 C5 N1 182.1 179.9
C5 C6 N1 C2 1.6 360.0
C5 C6 N1 H1 181.6 180.0
N7 C5 C4 C6 180.3 180.0
C8 N9 C4 C5 359.2 0.0
C4 C5 C6 O6 181.5 179.9
C4 C5 C6 N1 359.4 0.0
C2 N3 C4 C5 0.8 360.0
N3 C4 C5 N9 178.3 179.9
C5 C4 N9 C1' 180.2 179.9
O6 C6 C5 C4 181.5 179.9
C5 C6 O6 N1 177.9 180.1
O6 C6 N1 C2 179.6 180.1
O6 C6 N1 H1 359.6 0.1
N1 C6 C5 C4 359.4 0.0
C5 C6 N1 O6 182.0 179.9
C6 N1 C2 N2 179.0 180.1
C6 N1 C2 N3 358.6 0.0
C2 N1 C6 H1 180.0 179.9
C6 N1 C2 H1 180.0 180.1
N2 C2 N1 N3 180.4 180.1
N1 C2 N2 H2N1 180.0 359.9
N1 C2 N2 H2N2 0.0 180.0
N1 C2 N3 C4 0.2 0.0
N1 C2 N2 N3 179.6 179.9
N2 C2 N1 H1 359.0 360.0
N2 C2 N3 C4 179.8 180.0
H2N1 N2 C2 H2N2 180.0 179.9
C5 C4 N3 C2 0.8 360.0
N1 C2 N3 N2 180.4 180.1
N3 C2 N1 H1 178.6 179.9
N3 C2 N2 H2N1 0.4 180.0
N3 C2 N2 H2N2 180.5 0.1
C2 N3 C4 N9 178.7 179.8
C8 N9 C4 N3 181.1 180.1
C5 C4 N3 N9 182.1 180.1
N3 C4 N9 C1' 2.1 0.0
C8 N9 C4 C1' 179.0 180.1
C4 N9 C8 H8 179.7 179.9
C5 C4 N9 N3 178.1 179.9
C4 N9 C1' O4' 191.7 203.7
C4 N9 C1' C2' 77.3 88.4
C4 N9 C1' H1' 315.1 326.0
C8 N9 C1' C4 181.2 179.8
C1' N9 C8 H8 358.7 0.0
O4' C1' N9 C2' 114.4 115.3
N9 C1' O4' C4' 236.6 200.7
O4' C1' N9 H1' 236.6 237.7
N9 C1' C2' O2' 207.2 261.4
N9 C1' C2' C3' 92.6 142.8
C2' C1' N9 H1' 122.2 122.4
N9 C1' C2' H2' 328.9 24.0
N9 C1' O4' C2' 243.5 241.2
N9 C1' O4' H1' 121.6 122.3
O4' C1' C2' O2' 92.3 142.6
O4' C1' C2' C3' 337.7 24.0
C2' C1' O4' H1' 238.1 241.1
O4' C1' C2' H2' 214.0 265.2
C1' O4' C4' C3' 33.2 40.5
C1' O4' C4' C5' 153.2 159.4
C1' O4' C4' H4' 273.5 281.7
N9 C1' C2' O4' 114.9 118.8
N9 C1' C2' H1' 238.2 237.7
C2' C1' O4' C4' 353.0 319.5
O4' C1' C2' H1' 123.3 118.9
O2' C2' C1' C3' 114.6 118.6
O2' C2' C1' H2' 238.3 237.5
C1' C2' O2' HA 351.5 180.0
C1' C2' C3' O3' 159.6 118.6
C1' C2' C3' C4' 40.8 359.9
C3' C2' C1' H2' 123.7 118.9
C1' C2' C3' H3' 277.6 241.2
C4' O4' C1' C2' 353.0 319.5
C4' O4' C1' H1' 115.0 78.4
C2' C3' C4' O4' 314.5 336.0
O3' C3' C4' O4' 196.9 217.4
C3' C4' O4' C5' 240.0 241.2
C3' C4' O4' H4' 119.7 118.8
O4' C4' C3' H3' 78.8 94.7
O4' C4' C5' O5' 298.5 66.5
C5' C4' O4' H4' 239.7 237.7
O4' C4' C5' H5'1 58.5 186.5
O4' C4' C5' H5'2 178.4 306.5
C1' C2' O2' C3' 250.9 245.4
O2' C2' C1' H1' 329.0 23.8
C1' C2' O2' H2' 126.2 122.6
O2' C2' C3' O3' 47.3 0.1
O2' C2' C3' C4' 288.5 241.4
C3' C2' O2' H2' 235.2 237.2
O2' C2' C3' H3' 165.2 122.6
C1' C2' C3' O2' 112.3 118.6
C3' C2' C1' H1' 214.3 265.1
C1' C2' C3' H2' 234.5 241.2
O4' C4' C3' C2' 314.5 336.0
O2' C2' C3' H2' 122.1 122.6
C3' C2' O2' HA 100.5 294.6
O3' C3' C2' C4' 118.8 118.7
O3' C3' C2' H3' 242.0 237.4
C2' C3' O3' HO3' 305.7 61.4
C2' C3' C4' C5' 207.6 217.2
C2' C3' C4' H4' 84.7 94.9
C4' C3' C2' H3' 123.2 118.7
O4' C4' C3' O3' 196.9 217.4
C2' C3' O3' C4' 249.3 245.3
O3' C3' C2' H2' 285.1 237.4
C2' C3' O3' H3' 125.1 122.6
O3' C3' C4' C5' 90.0 98.5
O3' C3' C4' H4' 327.1 336.2
C4' C3' O3' H3' 235.8 237.2
O4' C4' C3' C5' 106.9 118.8
O4' C4' C3' H4' 229.8 241.1
C2' C3' C4' O3' 117.6 118.7
C4' C3' C2' H2' 166.3 118.7
C2' C3' C4' H3' 235.7 241.4
O3' C3' C4' H3' 118.1 122.7
C4' C3' O3' HO3' 56.4 176.1
C3' C4' C5' O5' 46.6 181.9
C5' C4' C3' H4' 122.9 122.3
C3' C4' C5' H5'1 166.6 301.9
C3' C4' C5' H5'2 286.4 61.9
O4' C4' C5' C3' 252.0 244.6
O4' C4' C5' H4' 129.9 122.3
C3' C4' C5' H4' 237.9 237.7
C5' C4' C3' H3' 331.9 335.8
C4' C5' O5' PBE 156.6 180.0
O5' C5' C4' H5'1 240.0 239.9
O5' C5' C4' H5'2 120.1 120.0
H5'1 C5' C4' H5'2 240.1 240.0
O5' C5' C4' H4' 168.6 304.1
C4' C5' O5' H5'1 120.0 120.1
C4' C5' O5' H5'2 239.9 240.0
C5' O5' PBE OP2 252.7 65.0
C5' O5' PBE OP3 8.5 185.0
C5' O5' PBE OP1 135.0 305.0
H5'1 C5' O5' H5'2 119.9 120.0
PBE O5' C5' H5'1 36.6 60.0
PBE O5' C5' H5'2 276.7 300.0
OP2 PBE O5' OP3 244.2 240.0
OP2 PBE O5' OP1 117.7 120.0
O5' PBE OP2 HOP2 113.7 60.0
OP3 PBE O5' OP1 233.5 240.0
O5' PBE OP3 HOP3 83.9 179.9
O5' PBE OP2 OP3 111.0 120.0
O5' PBE OP2 OP1 235.7 240.0
OP3 PBE OP2 OP1 124.7 120.0
OP2 PBE OP3 HOP3 193.8 299.9
O5' PBE OP3 OP2 250.1 240.0
O5' PBE OP3 OP1 128.8 120.0
OP2 PBE OP3 OP1 238.7 240.0
OP3 PBE OP2 HOP2 2.8 300.0
O5' PBE OP1 OP2 115.0 120.0
O5' PBE OP1 OP3 238.1 240.0
OP2 PBE OP1 OP3 123.1 120.0
OP1 PBE OP2 HOP2 238.1 180.0
OP1 PBE OP3 HOP3 315.1 60.0
CAI CAK HAK CAU 180.0 180.3
HAK CAK CAI CAH 180.5 179.7
HAK CAK CAI HAI 0.5 359.7
HAK CAK CAU CAL 180.2 180.3
HAK CAK CAU CAO 357.3 0.3
HAI CAI CAK CAU 180.5 180.0
CAK CAI HAI CAH 180.0 180.0
HAI CAI CAK HAK 0.5 359.7
HAI CAI CAH CAJ 179.2 180.0
HAI CAI CAH HAH 359.1 360.0
CAI CAH HAH CAJ 180.0 180.0
HAH CAH CAI HAI 359.1 360.0
HAH CAH CAJ CAL 180.4 180.0
HAH CAH CAJ HAJ 0.4 359.9
CAH CAJ HAJ CAL 180.0 180.1
HAJ CAJ CAH HAH 0.4 359.9
HAJ CAJ CAL CAU 180.3 180.1
HAJ CAJ CAL HAL 0.3 360.0
CAJ CAL HAL CAU 180.0 180.1
HAL CAL CAJ HAJ 0.3 360.0
HAL CAL CAU CAO 2.3 0.1
CAU CAO HAO1 N7 236.7 239.9
CAU CAO HAO1 HAO2 118.3 119.9
HAO1 CAO N7 C8 330.4 145.0
HAO1 CAO N7 C5 147.3 324.7
N7 CAO HAO1 HAO2 241.6 240.0
CAU CAO HAO2 N7 122.3 120.0
CAU CAO HAO2 HAO1 241.1 240.1
HAO2 CAO N7 C8 208.6 25.0
HAO2 CAO N7 C5 25.5 204.7
N7 CAO HAO2 HAO1 118.9 120.0
H8 C8 N7 C5 181.3 180.2
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C4 179.7 179.9
H8 C8 N9 C1' 358.7 0.0
C6 N1 H1 C2 180.0 179.9
H1 N1 C2 N2 359.0 360.0
H1 N1 C2 N3 178.6 179.9
H2N1 N2 C2 N3 0.4 180.0
C2 N2 H2N1 H2N2 180.0 180.1
H2N2 N2 C2 N3 180.5 0.1
C2 N2 H2N2 H2N1 179.9 179.9
N9 C1' H1' O4' 240.3 237.7
N9 C1' H1' C2' 121.1 122.3
O4' C1' H1' C2' 240.8 244.6
H1' C1' O4' C4' 115.0 78.4
H1' C1' C2' O2' 329.0 23.8
H1' C1' C2' C3' 214.3 265.1
H1' C1' C2' H2' 90.7 146.3
C1' C2' H2' O2' 239.6 237.4
C1' C2' H2' C3' 117.2 114.8
H2' C2' C1' H1' 90.7 146.3
O2' C2' H2' C3' 237.6 237.3
H2' C2' O2' HA 225.3 57.4
H2' C2' C3' O3' 285.1 237.4
H2' C2' C3' C4' 166.3 118.7
H2' C2' C3' H3' 43.1 360.0
O4' C4' H4' C3' 116.8 115.4
O4' C4' H4' C5' 244.3 237.7
C3' C4' H4' C5' 127.5 122.3
H4' C4' C3' H3' 209.0 213.5
H4' C4' C5' O5' 168.6 304.1
H4' C4' C5' H5'1 288.6 64.2
H4' C4' C5' H5'2 48.5 184.1
HA O2' C2' C3' 100.5 294.6
HA O2' C2' H2' 225.3 57.4
C2' C3' H3' O3' 238.1 237.4
C2' C3' H3' C4' 115.1 114.7
H3' C3' C2' H2' 43.1 360.0
O3' C3' H3' C4' 237.0 237.3
H3' C3' O3' HO3' 180.6 298.9
H3' C3' C4' C5' 331.9 335.8
H3' C3' C4' H4' 209.0 213.5
HO3' O3' C3' C4' 56.4 176.1
HO3' O3' C3' H3' 180.6 298.9
C4' C5' H5'1 O5' 240.3 239.9
H5'1 C5' C4' H4' 288.6 64.2
C4' C5' H5'1 H5'2 120.1 120.0
H5'1 C5' O5' PBE 36.6 60.0
O5' C5' H5'1 H5'2 239.8 240.0
C4' C5' H5'2 O5' 119.8 120.0
H5'2 C5' C4' H4' 48.5 184.1
C4' C5' H5'2 H5'1 239.9 240.0
H5'2 C5' O5' PBE 276.7 300.0
O5' C5' H5'2 H5'1 120.1 120.0
HOP2 OP2 PBE OP3 2.8 300.0
HOP2 OP2 PBE OP1 238.1 180.0
HOP3 OP3 PBE OP1 315.1 60.0