PDB Chemical Component MGP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MGP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PA O1A 1.496 1.610
PA O2A 1.483 1.481
PA O3A 1.626 1.610
PA O5' 1.655 1.611
O3A PB 1.611 1.610
O5' C5' 1.421 1.429
PB O1B 1.484 1.610
PB O2B 1.479 1.480
PB O3B 1.475 1.610
O3B PC 1.601 1.610
PC O1C 1.508 1.609
PC O2C 1.485 1.480
PC O3C 1.489 1.610
C5' C4' 1.504 1.530
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.089
C4' O4' 1.475 1.438
C4' C3' 1.505 1.541
C4' H4' 1.100 1.090
O4' C1' 1.455 1.444
C3' O3' 1.451 1.428
C3' C2' 1.552 1.549
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.460 1.429
C2' C1' 1.530 1.550
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.527 1.465
C1' H1' 1.100 1.089
N9 C8 1.346 1.365
N9 C4 1.353 1.369
C8 N7 1.300 1.301
C8 H8 1.080 1.080
N7 CM7 1.458 1.465
N7 C5 1.482 1.355
CM7 HM7 1.100 1.090
CM7 HM7A 1.100 1.091
CM7 HM7B 1.100 1.090
C5 C6 1.293 1.415
C5 C4 1.441 1.399
C6 O6 1.295 1.219
C6 N1 1.419 1.351
N1 C2 1.398 1.363
N1 HN1 1.000 0.970
C2 N2 1.314 1.372
C2 N3 1.334 1.315
N2 HN2 1.001 0.970
N2 HN2A 1.000 0.969
N3 C4 1.392 1.338
O1A H16 0.950 0.966
O1B H17 0.950 0.967
O1C H18 0.950 0.967
O3C H19 0.951 0.967

Bond Angles for MGP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A PA O2A 107.0 109.5
O1A PA O3A 110.0 109.5
O1A PA O5' 110.6 109.5
PA O1A H16 109.5 114.0
O2A PA O3A 108.8 109.5
O2A PA O5' 108.4 109.4
O3A PA O5' 111.8 109.5
PA O3A PB 126.6 134.0
PA O5' C5' 123.8 123.0
O3A PB O1B 111.9 109.4
O3A PB O2B 106.5 109.5
O3A PB O3B 110.4 109.5
O5' C5' C4' 116.4 109.4
O5' C5' H5' 107.2 109.5
O5' C5' H5'A 105.7 109.5
O1B PB O2B 109.3 109.5
O1B PB O3B 109.4 109.5
PB O1B H17 109.5 114.0
O2B PB O3B 109.3 109.5
PB O3B PC 145.1 134.0
O3B PC O1C 104.9 109.5
O3B PC O2C 112.7 109.5
O3B PC O3C 103.1 109.5
O1C PC O2C 111.9 109.4
O1C PC O3C 111.8 109.5
PC O1C H18 109.5 114.1
O2C PC O3C 111.9 109.5
PC O3C H19 109.5 114.0
C4' C5' H5' 107.2 109.5
C4' C5' H5'A 105.7 109.5
C5' C4' O4' 108.6 109.9
C5' C4' C3' 117.3 109.9
C5' C4' H4' 102.4 109.9
H5' C5' H5'A 115.0 109.5
O4' C4' C3' 100.7 107.3
O4' C4' H4' 118.6 109.9
C4' O4' C1' 110.0 107.0
C3' C4' H4' 110.1 110.0
C4' C3' O3' 111.3 110.5
C4' C3' C2' 101.2 104.2
C4' C3' H3' 113.7 110.5
O4' C1' C2' 105.2 103.5
O4' C1' N9 101.0 110.6
O4' C1' H1' 120.0 110.6
O3' C3' C2' 109.6 110.5
O3' C3' H3' 106.0 110.5
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 115.3 110.5
C3' C2' O2' 115.2 110.9
C3' C2' C1' 100.0 102.1
C3' C2' H2' 113.0 110.9
O2' C2' C1' 112.1 110.9
O2' C2' H2' 101.1 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 116.1 111.0
C2' C1' N9 116.6 110.6
C2' C1' H1' 105.3 110.6
N9 C1' H1' 109.3 110.7
C1' N9 C8 133.7 126.3
C1' N9 C4 117.4 126.3
C8 N9 C4 109.0 107.5
N9 C8 N7 109.2 109.8
N9 C8 H8 125.4 125.1
N9 C4 C5 111.2 106.1
N9 C4 N3 125.6 134.2
N7 C8 H8 125.4 125.1
C8 N7 CM7 125.4 125.3
C8 N7 C5 112.3 109.3
CM7 N7 C5 122.3 125.4
N7 CM7 HM7 109.5 109.5
N7 CM7 HM7A 109.4 109.4
N7 CM7 HM7B 109.4 109.5
N7 C5 C6 137.6 134.1
N7 C5 C4 98.4 107.3
HM7 CM7 HM7A 109.4 109.5
HM7 CM7 HM7B 109.5 109.5
HM7A CM7 HM7B 109.5 109.5
C6 C5 C4 124.0 118.6
C5 C6 O6 123.7 120.8
C5 C6 N1 111.7 118.3
C5 C4 N3 123.2 119.7
O6 C6 N1 124.6 120.9
C6 N1 C2 125.8 120.3
C6 N1 HN1 117.1 119.8
C2 N1 HN1 117.1 119.8
N1 C2 N2 119.6 119.1
N1 C2 N3 121.7 121.9
N2 C2 N3 118.7 119.0
C2 N2 HN2 109.9 120.0
C2 N2 HN2A 125.1 120.1
C2 N3 C4 113.5 121.1
HN2 N2 HN2A 125.0 120.0

Torsion Angles for MGP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2A PA O1A O3A 241.9 240.0
O2A PA O1A O5' 117.9 120.0
O3A PA O1A O5' 236.0 240.0
O1A PA O3A PB 76.2 285.0
O1A PA O5' C5' 329.4 65.0
O1A PA O2A O3A 118.9 120.0
O1A PA O2A O5' 240.7 240.0
O2A PA O1A H16 111.6 180.0
O3A PA O2A O5' 121.8 120.0
O2A PA O3A PB 193.2 45.0
O2A PA O5' C5' 212.3 305.0
O1A PA O3A O2A 243.0 240.0
O1A PA O3A O5' 123.3 120.0
O3A PA O1A H16 229.7 300.0
O2A PA O3A O5' 240.3 240.0
O3A PA O5' C5' 92.4 185.0
PA O3A PB O1B 300.6 80.0
PA O3A PB O2B 181.3 320.0
PA O3A PB O3B 62.8 200.0
O1A PA O5' O2A 117.1 120.0
O1A PA O5' O3A 237.0 240.0
O5' PA O1A H16 353.8 60.1
O2A PA O5' O3A 119.9 120.0
O5' PA O3A PB 312.9 165.0
PA O5' C5' C4' 132.8 180.0
PA O5' C5' H5' 252.8 300.0
PA O5' C5' H5'A 15.9 60.1
PB O3A PA O5' 312.9 165.0
O1B PB O3A O2B 119.3 120.0
O1B PB O3A O3B 237.8 240.0
O3A PB O1B H17 195.0 60.0
O2B PB O3A O3B 118.5 120.0
O3A PB O3B PC 89.2 165.1
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'A 116.8 120.0
O5' C5' C4' O4' 286.9 66.5
O5' C5' C4' C3' 40.2 184.3
O5' C5' C4' H4' 160.7 305.4
H5' C5' O5' H5'A 236.8 239.9
O3A PB O1B O2B 242.3 240.0
O3A PB O1B O3B 122.7 120.0
O2B PB O1B O3B 240.4 240.0
O1B PB O3B PC 212.8 285.0
O3A PB O2B O1B 121.0 120.0
O3A PB O2B O3B 240.8 240.0
O1B PB O2B O3B 119.7 120.0
O2B PB O1B H17 312.6 180.0
O2B PB O3B PC 332.4 45.0
O3A PB O3B O1B 236.4 240.0
O3A PB O3B O2B 116.8 120.0
O1B PB O3B O2B 240.4 240.0
O3B PB O1B H17 72.2 300.0
PB O3B PC O1C 204.2 200.0
PB O3B PC O2C 82.2 320.0
PB O3B PC O3C 321.4 79.9
O1C PC O3B O2C 122.0 240.0
O1C PC O3B O3C 242.8 120.1
O3B PC O1C H18 160.1 180.0
O2C PC O3B O3C 120.8 240.0
O3B PC O3C H19 311.3 60.0
O3B PC O1C O2C 237.5 120.0
O3B PC O1C O3C 111.1 239.9
O2C PC O1C O3C 233.6 120.0
O1C PC O3C H19 63.5 300.0
O3B PC O2C O1C 118.0 240.0
O3B PC O2C O3C 244.3 120.0
O1C PC O2C O3C 126.3 240.0
O2C PC O1C H18 282.6 60.0
O2C PC O3C H19 189.9 180.0
O3B PC O3C O1C 247.8 120.1
O3B PC O3C O2C 121.4 240.0
O1C PC O3C O2C 233.7 120.0
O3C PC O1C H18 49.0 300.0
O5' C5' C4' H5' 120.0 120.0
O5' C5' C4' H5'A 243.2 240.0
H5' C5' C4' H5'A 123.2 120.1
O4' C4' C5' C3' 246.7 242.2
O4' C4' C5' H4' 126.2 121.0
C5' C4' O4' C1' 152.4 146.0
C3' C4' C5' H4' 239.4 238.9
C5' C4' C3' O3' 81.1 119.9
C5' C4' C3' C2' 197.4 238.6
C5' C4' C3' H3' 321.6 357.3
O5' C5' H5' C4' 234.3 240.1
O5' C5' H5' H5'A 117.2 120.0
C4' C5' H5' H5'A 242.8 240.0
H5' C5' C4' O4' 166.9 306.5
H5' C5' C4' C3' 280.2 64.3
H5' C5' C4' H4' 40.8 185.5
O5' C5' H5'A C4' 123.9 119.9
O5' C5' H5'A H5' 241.9 240.0
C4' C5' H5'A H5' 118.1 120.0
H5'A C5' C4' O4' 43.8 186.4
H5'A C5' C4' C3' 157.0 304.3
H5'A C5' C4' H4' 277.6 65.4
O4' C4' C5' H5' 166.9 306.5
O4' C4' C5' H5'A 43.8 186.4
C5' C4' O4' C3' 123.8 119.4
C5' C4' O4' H4' 243.9 239.0
C3' C4' O4' H4' 120.0 119.5
O4' C4' C3' O3' 198.7 239.3
O4' C4' C3' C2' 315.0 358.0
O4' C4' C3' H3' 79.2 116.7
C4' O4' C1' C2' 0.1 319.9
C4' O4' C1' N9 238.4 201.5
C4' O4' C1' H1' 118.3 78.4
C3' C4' C5' H5' 280.2 64.3
C3' C4' C5' H5'A 157.0 304.3
C5' C4' C3' O4' 242.4 240.6
C5' C4' C3' H4' 116.4 121.1
O4' C4' C3' H4' 234.0 240.5
C3' C4' O4' C1' 28.5 26.5
O3' C3' C4' C2' 243.7 241.3
O3' C3' C4' H3' 119.5 122.6
C4' C3' O3' HO3' 210.3 180.0
C2' C3' C4' H3' 235.8 241.3
C4' C3' C2' O2' 284.6 220.9
C4' C3' C2' C1' 45.0 339.1
C4' C3' C2' H2' 169.1 97.3
H4' C4' C5' H5' 40.8 185.5
H4' C4' C5' H5'A 277.6 65.4
C5' C4' H4' O4' 119.4 121.0
C5' C4' H4' C3' 234.5 238.9
O4' C4' H4' C3' 115.1 117.9
H4' C4' O4' C1' 268.5 267.0
H4' C4' C3' O3' 324.6 358.8
H4' C4' C3' C2' 81.0 117.5
H4' C4' C3' H3' 205.1 236.2
C1' O4' C4' C3' 28.5 26.5
C1' O4' C4' H4' 268.5 267.0
C3' C2' C1' O4' 332.4 37.1
O2' C2' C1' O4' 95.0 155.2
O4' C1' C2' H2' 210.5 278.8
C2' C1' O4' N9 121.7 118.4
C2' C1' O4' H1' 241.8 241.5
N9 C1' O4' H1' 120.0 123.0
O4' C1' N9 C8 19.7 23.5
O4' C1' N9 C4 199.9 203.3
O3' C3' C4' H4' 324.6 358.8
C4' C3' O3' C2' 111.1 114.8
C4' C3' O3' H3' 236.0 237.4
C2' C3' O3' H3' 124.9 122.7
O3' C3' C2' O2' 42.2 339.6
O3' C3' C2' C1' 162.6 97.8
O3' C3' C2' H2' 286.6 216.0
C2' C3' C4' H4' 81.0 117.5
C4' C3' C2' O3' 242.4 241.3
C4' C3' C2' H3' 123.1 118.7
O4' C1' C2' C3' 332.4 37.1
O3' C3' C2' H3' 240.6 237.4
C2' C3' O3' HO3' 99.3 65.2
O2' C2' C3' C1' 239.6 241.8
O2' C2' C3' H2' 115.6 123.6
C3' C2' O2' HO2' 281.9 298.6
C1' C2' C3' H2' 235.9 241.7
C3' C2' C1' N9 83.3 155.5
C3' C2' C1' H1' 204.7 278.6
H3' C3' C4' H4' 205.1 236.2
C4' C3' H3' O3' 122.5 122.6
C4' C3' H3' C2' 243.8 245.2
O3' C3' H3' C2' 121.3 122.6
H3' C3' O3' HO3' 334.3 302.6
H3' C3' C2' O2' 161.6 102.2
H3' C3' C2' C1' 281.9 220.4
H3' C3' C2' H2' 46.0 338.6
HO3' O3' C3' C2' 99.3 65.2
HO3' O3' C3' H3' 334.3 302.6
O4' C1' C2' O2' 95.0 155.2
O2' C2' C3' H3' 161.6 102.2
C3' C2' O2' C1' 113.5 112.7
C3' C2' O2' H2' 237.8 236.4
C1' C2' O2' H2' 124.3 123.7
O2' C2' C1' N9 205.9 273.7
O2' C2' C1' H1' 327.3 36.7
O4' C1' C2' N9 249.0 241.5
O4' C1' C2' H1' 127.7 118.5
C1' C2' C3' H3' 281.9 220.4
C3' C2' C1' O2' 237.4 241.8
C3' C2' C1' H2' 121.9 118.2
O2' C2' C1' H2' 244.5 236.4
C1' C2' O2' HO2' 168.4 185.9
N9 C1' C2' H1' 238.6 237.0
C2' C1' N9 C8 266.4 269.5
C2' C1' N9 C4 86.5 89.3
H2' C2' C3' H3' 46.0 338.6
C3' C2' H2' O2' 123.7 123.6
C3' C2' H2' C1' 245.3 247.3
O2' C2' H2' C1' 121.6 123.7
H2' C2' O2' HO2' 44.1 62.2
H2' C2' C1' N9 321.5 37.3
H2' C2' C1' H1' 82.8 160.3
HO2' O2' C2' C1' 168.4 185.9
HO2' O2' C2' H2' 44.1 62.2
O4' C1' N9 C2' 113.4 114.0
O4' C1' N9 H1' 232.6 237.0
N9 C1' C2' H2' 321.5 37.3
C2' C1' N9 H1' 119.2 123.0
C8 N9 C1' C4 179.8 180.2
C1' N9 C8 N7 180.1 180.0
C1' N9 C8 H8 0.1 0.0
C1' N9 C4 C5 179.8 179.9
C1' N9 C4 N3 359.9 0.6
O4' C1' H1' C2' 241.8 245.9
O4' C1' H1' N9 115.8 123.0
H1' C1' C2' H2' 82.8 160.3
C2' C1' H1' N9 234.0 237.1
H1' C1' N9 C8 147.1 146.5
H1' C1' N9 C4 327.3 326.3
C8 N9 C1' H1' 147.1 146.5
C1' N9 C8 C4 180.1 179.8
C8 N9 C4 C5 360.0 359.7
C8 N9 C4 N3 180.0 180.4
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 CM7 180.0 180.0
N9 C8 N7 C5 0.1 360.0
C4 N9 C1' H1' 327.3 326.3
C1' N9 C4 C8 179.9 180.2
C4 N9 C8 N7 360.0 0.2
C4 N9 C8 H8 180.0 180.2
N7 C5 C4 N9 0.1 0.3
C6 C5 C4 N9 180.0 180.1
C5 C4 N9 N3 179.9 179.3
C2 N3 C4 N9 179.9 179.7
N7 C8 N9 C4 360.0 0.2
N9 C8 N7 H8 180.0 180.0
CM7 N7 C8 C5 179.9 180.0
C8 N7 CM7 HM7 271.6 90.0
C8 N7 CM7 HM7A 31.5 210.0
C8 N7 CM7 HM7B 151.6 330.0
C8 N7 C5 C6 180.0 180.0
C8 N7 C5 C4 359.9 359.8
H8 C8 N9 C4 180.0 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 CM7 0.0 0.0
H8 C8 N7 C5 180.1 180.0
CM7 N7 C8 H8 0.0 0.0
C8 N7 CM7 C5 180.1 180.0
CM7 N7 C5 C6 0.0 360.0
CM7 N7 C5 C4 179.9 179.8
HM7 CM7 N7 HM7A 240.0 240.0
HM7 CM7 N7 HM7B 120.0 120.0
HM7A CM7 N7 HM7B 240.0 240.0
N9 C4 C5 N7 0.1 0.3
C5 N7 C8 H8 180.1 180.0
C8 N7 C5 CM7 179.9 180.0
C5 N7 CM7 HM7 91.5 270.1
C5 N7 CM7 HM7A 211.5 30.0
C5 N7 CM7 HM7B 331.5 150.0
C6 C5 N7 C4 180.1 180.2
N7 C5 C6 O6 360.0 360.0
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 180.0 179.7
HM7 CM7 N7 C5 91.5 270.1
N7 CM7 HM7 HM7A 120.0 120.0
N7 CM7 HM7 HM7B 240.0 240.0
HM7A CM7 HM7 HM7B 120.1 120.0
HM7A CM7 N7 C5 211.5 30.0
N7 CM7 HM7A HM7 240.0 240.0
N7 CM7 HM7A HM7B 120.0 120.0
HM7 CM7 HM7A HM7B 240.0 240.0
HM7B CM7 N7 C5 331.5 150.0
N7 CM7 HM7B HM7 120.0 120.0
N7 CM7 HM7B HM7A 240.0 240.0
HM7 CM7 HM7B HM7A 120.0 120.0
N9 C4 C5 C6 180.0 180.1
N7 C5 C6 C4 179.9 179.8
C6 C5 C4 N3 359.9 359.5
O6 C6 C5 N1 180.0 179.9
C5 C6 N1 C2 359.9 359.9
C5 C6 N1 HN1 179.8 180.0
N9 C4 C5 N3 180.1 180.6
N7 C5 C4 C6 180.1 180.2
C4 C5 C6 O6 180.1 180.2
C4 C5 C6 N1 0.1 0.3
C2 N3 C4 C5 360.0 0.5
O6 C6 C5 C4 180.1 180.2
C5 C6 O6 N1 180.1 180.1
O6 C6 N1 C2 179.9 180.0
O6 C6 N1 HN1 359.9 0.0
N1 C6 C5 C4 0.1 0.3
C5 C6 N1 O6 179.9 179.9
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 180.1 180.1
C6 N1 C2 N3 0.1 0.0
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 180.0 180.0
N1 C2 N2 HN2 180.0 0.0
N1 C2 N2 HN2A 360.0 180.0
N1 C2 N3 C4 360.0 359.7
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 0.1 0.0
HN1 N1 C2 N3 180.1 180.0
N2 C2 N1 HN1 0.1 0.0
N1 C2 N2 N3 180.0 180.0
N2 C2 N3 C4 180.0 179.7
HN2 N2 C2 HN2A 180.0 180.0
N9 C4 N3 C2 179.9 179.7
C5 C4 N3 C2 360.0 0.5
N3 C2 N1 HN1 180.1 180.0
N1 C2 N3 N2 180.0 180.0
N3 C2 N2 HN2 360.0 180.1
N3 C2 N2 HN2A 180.0 0.0
HN2 N2 C2 N3 360.0 180.1
C2 N2 HN2 HN2A 180.0 180.0
HN2A N2 C2 N3 180.0 0.0
C2 N2 HN2A HN2 180.0 180.0
N9 C4 N3 C5 179.9 179.2
H16 O1A PA O2A 111.6 180.0
H16 O1A PA O3A 229.7 300.0
H16 O1A PA O5' 353.8 60.1
H17 O1B PB O2B 312.6 180.0
H17 O1B PB O3B 72.2 300.0
H18 O1C PC O2C 282.6 60.0
H18 O1C PC O3C 49.0 300.0