PDB Chemical Component MGL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MGL
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.530 |
1.530 |
C1 |
O1 |
1.390 |
1.428 |
C1 |
O5 |
1.433 |
1.425 |
C1 |
H1 |
1.062 |
1.090 |
C2 |
C3 |
1.538 |
1.532 |
C2 |
O2 |
1.426 |
1.428 |
C2 |
H2 |
1.100 |
1.089 |
C3 |
C4 |
1.551 |
1.532 |
C3 |
O3 |
1.429 |
1.428 |
C3 |
H3 |
1.096 |
1.091 |
C4 |
C5 |
1.545 |
1.530 |
C4 |
O4 |
1.443 |
1.429 |
C4 |
H4 |
1.099 |
1.090 |
C5 |
C6 |
1.525 |
1.529 |
C5 |
O5 |
1.440 |
1.425 |
C5 |
H5 |
1.100 |
1.090 |
C6 |
O6 |
1.426 |
1.428 |
C6 |
H61 |
1.101 |
1.090 |
C6 |
H62 |
1.098 |
1.090 |
C7 |
O1 |
1.449 |
1.429 |
C7 |
H71 |
1.101 |
1.090 |
C7 |
H72 |
1.096 |
1.090 |
C7 |
H73 |
1.098 |
1.088 |
O2 |
HO2 |
0.958 |
0.967 |
O3 |
HO3 |
0.961 |
0.967 |
O4 |
HO4 |
0.950 |
0.967 |
O6 |
HO6 |
0.957 |
0.967 |
Bond Angles for MGL
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O1 |
111.4 |
109.4 |
C2 |
C1 |
O5 |
110.3 |
109.8 |
C2 |
C1 |
H1 |
110.1 |
109.4 |
C1 |
C2 |
C3 |
108.9 |
109.0 |
C1 |
C2 |
O2 |
109.3 |
109.6 |
C1 |
C2 |
H2 |
109.0 |
109.5 |
O1 |
C1 |
O5 |
108.7 |
109.5 |
O1 |
C1 |
H1 |
106.5 |
109.4 |
C1 |
O1 |
C7 |
116.1 |
106.8 |
O5 |
C1 |
H1 |
109.7 |
109.4 |
C1 |
O5 |
C5 |
111.2 |
107.7 |
C3 |
C2 |
O2 |
109.8 |
109.6 |
C3 |
C2 |
H2 |
110.1 |
109.6 |
C2 |
C3 |
C4 |
112.2 |
108.7 |
C2 |
C3 |
O3 |
110.3 |
109.8 |
C2 |
C3 |
H3 |
108.0 |
109.7 |
O2 |
C2 |
H2 |
109.7 |
109.6 |
C2 |
O2 |
HO2 |
108.9 |
106.9 |
C4 |
C3 |
O3 |
109.9 |
109.6 |
C4 |
C3 |
H3 |
108.7 |
109.5 |
C3 |
C4 |
C5 |
112.2 |
109.1 |
C3 |
C4 |
O4 |
108.3 |
109.7 |
C3 |
C4 |
H4 |
107.6 |
109.5 |
O3 |
C3 |
H3 |
107.6 |
109.5 |
C3 |
O3 |
HO3 |
109.2 |
106.9 |
C5 |
C4 |
O4 |
108.0 |
109.6 |
C5 |
C4 |
H4 |
108.0 |
109.5 |
C4 |
C5 |
C6 |
114.2 |
109.4 |
C4 |
C5 |
O5 |
110.4 |
109.8 |
C4 |
C5 |
H5 |
110.1 |
109.4 |
O4 |
C4 |
H4 |
112.9 |
109.5 |
C4 |
O4 |
HO4 |
108.3 |
106.9 |
C6 |
C5 |
O5 |
107.3 |
109.4 |
C6 |
C5 |
H5 |
106.8 |
109.4 |
C5 |
C6 |
O6 |
111.5 |
109.5 |
C5 |
C6 |
H61 |
110.0 |
109.5 |
C5 |
C6 |
H62 |
109.8 |
109.4 |
O5 |
C5 |
H5 |
107.7 |
109.4 |
O6 |
C6 |
H61 |
108.7 |
109.5 |
O6 |
C6 |
H62 |
109.7 |
109.5 |
C6 |
O6 |
HO6 |
109.4 |
106.8 |
H61 |
C6 |
H62 |
107.0 |
109.4 |
O1 |
C7 |
H71 |
111.6 |
109.5 |
O1 |
C7 |
H72 |
112.0 |
109.4 |
O1 |
C7 |
H73 |
109.7 |
109.5 |
H71 |
C7 |
H72 |
108.5 |
109.4 |
H71 |
C7 |
H73 |
107.3 |
109.5 |
H72 |
C7 |
H73 |
107.6 |
109.5 |
Torsion Angles for MGL
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
C2 |
O5 |
120.8 |
120.2 |
O1 |
C1 |
C2 |
H1 |
242.1 |
240.2 |
C2 |
C1 |
O1 |
C7 |
171.2 |
179.9 |
O5 |
C1 |
C2 |
H1 |
121.3 |
120.0 |
C2 |
C1 |
O5 |
C5 |
292.2 |
292.4 |
C3 |
C2 |
C1 |
O2 |
240.1 |
240.1 |
C3 |
C2 |
C1 |
H2 |
120.1 |
119.9 |
C1 |
C2 |
C3 |
C4 |
311.1 |
306.3 |
C1 |
C2 |
C3 |
O3 |
188.2 |
186.4 |
C1 |
C2 |
C3 |
H3 |
70.8 |
66.0 |
O2 |
C2 |
C1 |
H2 |
240.0 |
239.8 |
C1 |
C2 |
O2 |
HO2 |
174.3 |
60.4 |
C2 |
C1 |
O1 |
O5 |
238.2 |
239.6 |
C2 |
C1 |
O1 |
H1 |
120.0 |
119.8 |
O1 |
C1 |
C2 |
C3 |
180.7 |
181.4 |
O1 |
C1 |
C2 |
O2 |
300.6 |
301.4 |
O1 |
C1 |
C2 |
H2 |
60.5 |
61.6 |
O5 |
C1 |
O1 |
H1 |
241.8 |
240.2 |
O1 |
C1 |
O5 |
C5 |
169.8 |
172.3 |
C1 |
O1 |
C7 |
H71 |
59.9 |
180.0 |
C1 |
O1 |
C7 |
H72 |
298.0 |
299.9 |
C1 |
O1 |
C7 |
H73 |
178.6 |
59.9 |
C2 |
C1 |
O5 |
O1 |
122.4 |
120.2 |
C2 |
C1 |
O5 |
H1 |
238.5 |
240.0 |
O5 |
C1 |
C2 |
C3 |
59.8 |
61.3 |
O5 |
C1 |
C2 |
O2 |
179.7 |
181.2 |
O5 |
C1 |
C2 |
H2 |
299.7 |
301.4 |
O1 |
C1 |
O5 |
H1 |
116.1 |
119.8 |
O5 |
C1 |
O1 |
C7 |
293.0 |
300.2 |
C4 |
C5 |
O5 |
C1 |
61.8 |
67.5 |
C6 |
C5 |
O5 |
C1 |
186.9 |
187.6 |
C1 |
O5 |
C5 |
H5 |
301.5 |
307.5 |
C2 |
C1 |
H1 |
O1 |
239.1 |
240.2 |
C2 |
C1 |
H1 |
O5 |
121.6 |
120.3 |
H1 |
C1 |
C2 |
C3 |
298.5 |
301.2 |
H1 |
C1 |
C2 |
O2 |
58.4 |
61.2 |
H1 |
C1 |
C2 |
H2 |
178.4 |
181.4 |
O1 |
C1 |
H1 |
O5 |
242.5 |
240.1 |
H1 |
C1 |
O1 |
C7 |
51.2 |
60.1 |
H1 |
C1 |
O5 |
C5 |
53.7 |
52.5 |
C3 |
C2 |
C1 |
O1 |
180.7 |
181.4 |
C3 |
C2 |
C1 |
O5 |
59.8 |
61.3 |
C3 |
C2 |
C1 |
H1 |
298.5 |
301.2 |
C1 |
C2 |
C3 |
O2 |
119.6 |
119.9 |
C1 |
C2 |
C3 |
H2 |
240.5 |
240.2 |
O2 |
C2 |
C3 |
H2 |
120.9 |
120.2 |
C3 |
C2 |
O2 |
HO2 |
293.6 |
180.0 |
C4 |
C3 |
C2 |
O3 |
122.9 |
119.9 |
C4 |
C3 |
C2 |
H3 |
240.2 |
240.3 |
C2 |
C3 |
C4 |
C5 |
45.2 |
53.7 |
C2 |
C3 |
C4 |
O4 |
164.3 |
173.7 |
C2 |
C3 |
C4 |
H4 |
286.6 |
293.9 |
O3 |
C3 |
C2 |
H3 |
117.3 |
120.4 |
C2 |
C3 |
O3 |
HO3 |
188.7 |
299.3 |
O2 |
C2 |
C1 |
O1 |
300.6 |
301.4 |
O2 |
C2 |
C1 |
O5 |
179.7 |
181.2 |
O2 |
C2 |
C1 |
H1 |
58.4 |
61.2 |
C1 |
C2 |
O2 |
C3 |
240.7 |
240.4 |
C1 |
C2 |
O2 |
H2 |
119.5 |
120.2 |
C3 |
C2 |
O2 |
H2 |
238.9 |
239.8 |
O2 |
C2 |
C3 |
C4 |
191.4 |
186.4 |
O2 |
C2 |
C3 |
O3 |
68.5 |
66.5 |
O2 |
C2 |
C3 |
H3 |
311.2 |
306.1 |
H2 |
C2 |
C1 |
O1 |
60.5 |
61.6 |
H2 |
C2 |
C1 |
O5 |
299.7 |
301.4 |
H2 |
C2 |
C1 |
H1 |
178.4 |
181.4 |
C1 |
C2 |
H2 |
C3 |
119.4 |
119.5 |
C1 |
C2 |
H2 |
O2 |
240.3 |
239.8 |
C3 |
C2 |
H2 |
O2 |
120.9 |
120.3 |
H2 |
C2 |
C3 |
C4 |
70.5 |
66.1 |
H2 |
C2 |
C3 |
O3 |
307.6 |
306.2 |
H2 |
C2 |
C3 |
H3 |
190.3 |
185.8 |
H2 |
C2 |
O2 |
HO2 |
54.7 |
300.2 |
C4 |
C3 |
C2 |
O2 |
191.4 |
186.4 |
C4 |
C3 |
C2 |
H2 |
70.5 |
66.1 |
C2 |
C3 |
C4 |
O3 |
236.9 |
240.0 |
C2 |
C3 |
C4 |
H3 |
119.4 |
119.8 |
O3 |
C3 |
C4 |
H3 |
242.5 |
239.8 |
C4 |
C3 |
O3 |
HO3 |
64.5 |
180.0 |
C5 |
C4 |
C3 |
O4 |
240.9 |
240.0 |
C5 |
C4 |
C3 |
H4 |
118.6 |
119.8 |
C3 |
C4 |
C5 |
C6 |
188.8 |
178.7 |
C3 |
C4 |
C5 |
O5 |
309.8 |
298.8 |
C3 |
C4 |
C5 |
H5 |
68.6 |
58.9 |
O4 |
C4 |
C3 |
H4 |
237.7 |
239.8 |
C3 |
C4 |
O4 |
HO4 |
180.0 |
60.3 |
O3 |
C3 |
C2 |
O2 |
68.5 |
66.5 |
O3 |
C3 |
C2 |
H2 |
307.6 |
306.2 |
C2 |
C3 |
O3 |
C4 |
124.2 |
119.3 |
C2 |
C3 |
O3 |
H3 |
242.4 |
239.5 |
C4 |
C3 |
O3 |
H3 |
118.2 |
120.2 |
O3 |
C3 |
C4 |
C5 |
168.4 |
173.7 |
O3 |
C3 |
C4 |
O4 |
287.4 |
293.7 |
O3 |
C3 |
C4 |
H4 |
49.7 |
53.9 |
H3 |
C3 |
C2 |
O2 |
311.2 |
306.1 |
H3 |
C3 |
C2 |
H2 |
190.3 |
185.8 |
C2 |
C3 |
H3 |
C4 |
238.0 |
240.8 |
C2 |
C3 |
H3 |
O3 |
119.1 |
120.6 |
C4 |
C3 |
H3 |
O3 |
241.0 |
239.7 |
H3 |
C3 |
C4 |
C5 |
285.9 |
293.9 |
H3 |
C3 |
C4 |
O4 |
44.9 |
53.9 |
H3 |
C3 |
C4 |
H4 |
167.3 |
174.1 |
H3 |
C3 |
O3 |
HO3 |
306.3 |
59.8 |
C1 |
O5 |
C5 |
C4 |
61.8 |
67.5 |
C5 |
C4 |
C3 |
O3 |
168.4 |
173.7 |
C5 |
C4 |
C3 |
H3 |
285.9 |
293.9 |
C3 |
C4 |
C5 |
O4 |
119.3 |
120.1 |
C3 |
C4 |
C5 |
H4 |
241.6 |
240.2 |
O4 |
C4 |
C5 |
H4 |
122.4 |
120.1 |
C5 |
C4 |
O4 |
HO4 |
301.7 |
180.0 |
C6 |
C5 |
C4 |
O5 |
238.9 |
239.9 |
C6 |
C5 |
C4 |
H5 |
120.2 |
119.8 |
C4 |
C5 |
C6 |
O6 |
291.9 |
180.3 |
C4 |
C5 |
C6 |
H61 |
171.2 |
300.4 |
C4 |
C5 |
C6 |
H62 |
53.7 |
60.3 |
O5 |
C5 |
C4 |
H5 |
241.2 |
240.0 |
O4 |
C4 |
C3 |
O3 |
287.4 |
293.7 |
O4 |
C4 |
C3 |
H3 |
44.9 |
53.9 |
C3 |
C4 |
O4 |
C5 |
238.3 |
240.3 |
C3 |
C4 |
O4 |
H4 |
119.0 |
120.2 |
C5 |
C4 |
O4 |
H4 |
240.7 |
239.9 |
O4 |
C4 |
C5 |
C6 |
69.5 |
58.6 |
O4 |
C4 |
C5 |
O5 |
190.6 |
178.8 |
O4 |
C4 |
C5 |
H5 |
309.4 |
298.8 |
H4 |
C4 |
C3 |
O3 |
49.7 |
53.9 |
H4 |
C4 |
C3 |
H3 |
167.3 |
174.1 |
C3 |
C4 |
H4 |
C5 |
121.3 |
119.5 |
C3 |
C4 |
H4 |
O4 |
240.5 |
239.7 |
C5 |
C4 |
H4 |
O4 |
119.3 |
120.2 |
H4 |
C4 |
C5 |
C6 |
307.2 |
298.5 |
H4 |
C4 |
C5 |
O5 |
68.2 |
58.7 |
H4 |
C4 |
C5 |
H5 |
187.0 |
178.7 |
H4 |
C4 |
O4 |
HO4 |
61.0 |
300.1 |
C1 |
O5 |
C5 |
C6 |
186.9 |
187.6 |
C6 |
C5 |
C4 |
O4 |
69.5 |
58.6 |
C6 |
C5 |
C4 |
H4 |
307.2 |
298.5 |
C4 |
C5 |
C6 |
O5 |
122.8 |
120.4 |
C4 |
C5 |
C6 |
H5 |
238.0 |
240.2 |
O5 |
C5 |
C6 |
H5 |
115.3 |
119.8 |
O6 |
C6 |
C5 |
H61 |
120.7 |
240.0 |
O6 |
C6 |
C5 |
H62 |
238.2 |
120.0 |
C5 |
C6 |
O6 |
HO6 |
308.0 |
180.0 |
H61 |
C6 |
C5 |
H62 |
117.5 |
240.1 |
C5 |
O5 |
C1 |
H1 |
53.7 |
52.5 |
O5 |
C5 |
C4 |
O4 |
190.6 |
178.8 |
O5 |
C5 |
C4 |
H4 |
68.2 |
58.7 |
C4 |
C5 |
O5 |
C6 |
234.9 |
239.9 |
C4 |
C5 |
O5 |
H5 |
120.2 |
120.0 |
C6 |
C5 |
O5 |
H5 |
245.3 |
240.1 |
O5 |
C5 |
C6 |
O6 |
169.1 |
60.0 |
O5 |
C5 |
C6 |
H61 |
48.4 |
180.0 |
O5 |
C5 |
C6 |
H62 |
290.9 |
299.9 |
H5 |
C5 |
C4 |
O4 |
309.4 |
298.8 |
H5 |
C5 |
C4 |
H4 |
187.0 |
178.7 |
C4 |
C5 |
H5 |
C6 |
124.5 |
119.9 |
C4 |
C5 |
H5 |
O5 |
239.5 |
239.7 |
C6 |
C5 |
H5 |
O5 |
115.0 |
119.9 |
H5 |
C5 |
C6 |
O6 |
53.9 |
300.2 |
H5 |
C5 |
C6 |
H61 |
293.1 |
60.2 |
H5 |
C5 |
C6 |
H62 |
175.7 |
180.1 |
O6 |
C6 |
C5 |
O5 |
169.1 |
60.0 |
O6 |
C6 |
C5 |
H5 |
53.9 |
300.2 |
C5 |
C6 |
O6 |
H61 |
238.6 |
120.1 |
C5 |
C6 |
O6 |
H62 |
121.8 |
240.0 |
H61 |
C6 |
O6 |
H62 |
243.3 |
120.0 |
H61 |
C6 |
C5 |
O5 |
48.4 |
180.0 |
H61 |
C6 |
C5 |
H5 |
293.1 |
60.2 |
C5 |
C6 |
H61 |
O6 |
122.4 |
239.9 |
C5 |
C6 |
H61 |
H62 |
240.8 |
119.9 |
O6 |
C6 |
H61 |
H62 |
118.4 |
240.0 |
H61 |
C6 |
O6 |
HO6 |
69.5 |
59.9 |
H62 |
C6 |
C5 |
O5 |
290.9 |
299.9 |
H62 |
C6 |
C5 |
H5 |
175.7 |
180.1 |
C5 |
C6 |
H62 |
O6 |
237.1 |
120.1 |
C5 |
C6 |
H62 |
H61 |
119.3 |
240.0 |
O6 |
C6 |
H62 |
H61 |
242.2 |
120.0 |
H62 |
C6 |
O6 |
HO6 |
186.2 |
300.0 |
C7 |
O1 |
C1 |
O5 |
293.0 |
300.2 |
C7 |
O1 |
C1 |
H1 |
51.2 |
60.1 |
H71 |
C7 |
O1 |
H72 |
121.8 |
240.1 |
H71 |
C7 |
O1 |
H73 |
241.2 |
120.1 |
H72 |
C7 |
O1 |
H73 |
119.4 |
240.0 |
O1 |
C7 |
H71 |
H72 |
236.1 |
119.9 |
O1 |
C7 |
H71 |
H73 |
120.2 |
239.9 |
H72 |
C7 |
H71 |
H73 |
244.0 |
120.0 |
O1 |
C7 |
H72 |
H71 |
123.6 |
240.0 |
O1 |
C7 |
H72 |
H73 |
239.4 |
120.0 |
H71 |
C7 |
H72 |
H73 |
115.8 |
240.0 |
O1 |
C7 |
H73 |
H71 |
238.6 |
120.1 |
O1 |
C7 |
H73 |
H72 |
122.1 |
240.0 |
H71 |
C7 |
H73 |
H72 |
243.4 |
119.9 |
HO2 |
O2 |
C2 |
H2 |
54.7 |
300.2 |
HO3 |
O3 |
C3 |
H3 |
306.3 |
59.8 |
HO4 |
O4 |
C4 |
H4 |
61.0 |
300.1 |
HO6 |
O6 |
C6 |
H61 |
69.5 |
59.9 |
HO6 |
O6 |
C6 |
H62 |
186.2 |
300.0 |