PDB Chemical Component MG1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MG1

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.620 1.617
OP3 HOP3 0.950 0.981
P OP1 1.479 1.501
P OP2 1.481 1.617
P O5' 1.609 1.619
OP2 HOP2 0.950 0.981
O5' C5' 1.417 1.417
C5' C4' 1.538 1.523
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.091
C4' O4' 1.411 1.443
C4' C3' 1.537 1.525
C4' H4' 1.100 1.095
O4' C1' 1.406 1.439
C3' O3' 1.421 1.425
C3' C2' 1.525 1.512
C3' H3' 1.099 1.093
O3' HO3' 0.950 0.970
C2' C1' 1.527 1.522
C2' H2' 1.100 1.097
C2' H2'' 1.100 1.094
C1' N9 1.476 1.459
C1' H1' 1.100 1.095
N9 C8 1.374 1.372
N9 C4 1.367 1.364
C8 N7 1.302 1.319
C8 H8 1.080 1.081
N7 C5 1.388 1.365
C5 C4 1.388 1.370
C5 C6 1.423 1.436
C6 O6 1.234 1.226
C6 N1 1.398 1.421
N1 C2 1.404 1.441
N1 CM1 1.457 1.461
CM1 HM11 1.100 1.093
CM1 HM12 1.100 1.093
CM1 HM13 1.100 1.094
C2 N3 1.348 1.320
C2 N2 1.338 1.377
N2 H21 1.000 0.990
N2 H22 0.999 0.991
N3 C4 1.362 1.347

Bond Angles for MG1

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 118.9
OP3 P OP1 107.7 115.3
OP3 P OP2 109.8 103.3
OP3 P O5' 101.6 103.7
OP1 P OP2 119.7 115.0
OP1 P O5' 108.4 115.0
OP2 P O5' 108.2 102.9
P OP2 HOP2 109.5 118.9
P O5' C5' 122.3 118.5
O5' C5' C4' 107.6 108.7
O5' C5' H5' 110.1 109.2
O5' C5' H5'' 110.5 109.2
C4' C5' H5' 110.1 110.1
C4' C5' H5'' 110.5 110.1
C5' C4' O4' 108.8 108.0
C5' C4' C3' 112.6 112.7
C5' C4' H4' 107.5 109.4
H5' C5' H5'' 108.0 109.6
O4' C4' C3' 108.4 106.8
O4' C4' H4' 111.8 107.7
C4' O4' C1' 109.5 108.7
C3' C4' H4' 107.9 112.0
C4' C3' O3' 110.5 109.6
C4' C3' C2' 102.6 103.2
C4' C3' H3' 113.9 114.0
O4' C1' C2' 108.6 106.7
O4' C1' N9 107.4 110.0
O4' C1' H1' 112.3 108.1
O3' C3' C2' 111.3 108.4
O3' C3' H3' 105.6 107.8
C3' O3' HO3' 109.5 106.5
C2' C3' H3' 113.1 113.7
C3' C2' C1' 102.1 101.6
C3' C2' H2' 112.0 110.0
C3' C2' H2'' 113.6 114.2
C1' C2' H2' 112.0 110.5
C1' C2' H2'' 113.6 111.7
C2' C1' N9 112.0 114.3
C2' C1' H1' 107.7 111.7
H2' C2' H2'' 103.9 108.7
N9 C1' H1' 108.9 105.9
C1' N9 C8 129.1 126.0
C1' N9 C4 124.9 127.2
C8 N9 C4 105.7 106.8
N9 C8 N7 114.0 112.2
N9 C8 H8 123.0 122.2
N9 C4 C5 105.8 105.0
N9 C4 N3 127.3 125.9
N7 C8 H8 123.0 125.6
C8 N7 C5 104.0 104.0
N7 C5 C4 110.3 112.0
N7 C5 C6 131.1 128.3
C6 C5 C4 118.6 119.7
C5 C4 N3 126.9 129.1
C5 C6 O6 127.3 121.9
C5 C6 N1 113.8 111.5
O6 C6 N1 118.9 126.6
C6 N1 C2 123.6 123.5
C6 N1 CM1 115.3 118.3
CM1 N1 C2 120.8 118.2
N1 C2 N3 121.5 122.5
N1 C2 N2 119.2 119.0
N1 CM1 HM11 109.5 110.1
N1 CM1 HM12 109.5 110.2
N1 CM1 HM13 109.5 110.2
HM11 CM1 HM12 109.5 108.8
HM11 CM1 HM13 109.5 108.8
HM12 CM1 HM13 109.5 108.7
N2 C2 N3 118.9 118.5
C2 N3 C4 114.6 113.8
C2 N2 H21 110.1 117.9
C2 N2 H22 124.9 117.9
H21 N2 H22 125.0 124.1

Torsion Angles for MG1

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 131.9 126.3
OP1 P OP3 O5' 246.2 233.4
OP2 P OP3 O5' 114.3 107.1
OP3 P OP2 HOP2 94.5 78.5
OP3 P O5' C5' 55.3 53.2
HOP3 OP3 P OP1 218.1 48.8
HOP3 OP3 P OP2 86.1 282.5
HOP3 OP3 P O5' 331.8 175.4
OP1 P OP3 HOP3 218.1 48.8
OP3 P OP1 OP2 233.7 239.9
OP3 P OP1 O5' 109.2 120.6
OP2 P OP1 O5' 235.4 240.7
OP1 P OP2 HOP2 329.3 312.0
OP1 P O5' C5' 168.5 180.0
OP2 P OP3 HOP3 86.1 282.5
OP3 P OP2 OP1 125.3 126.5
OP3 P OP2 O5' 249.9 252.3
OP1 P OP2 O5' 124.7 125.8
OP2 P O5' C5' 299.7 305.8
O5' P OP3 HOP3 331.8 175.4
OP3 P O5' OP1 246.8 233.2
OP3 P O5' OP2 115.6 107.4
OP1 P O5' OP2 228.8 234.2
O5' P OP2 HOP2 204.6 186.1
P O5' C5' C4' 188.4 180.0
P O5' C5' H5' 308.5 300.1
P O5' C5' H5'' 67.7 59.9
HOP2 OP2 P O5' 204.6 186.1
C4' C5' O5' H5' 240.0 239.9
C4' C5' O5' H5'' 120.7 120.1
O5' C5' C4' O4' 143.9 61.8
O5' C5' C4' C3' 264.1 179.5
O5' C5' C4' H4' 22.7 304.8
H5' C5' O5' H5'' 240.7 240.2
O5' C5' C4' H5' 120.0 119.6
O5' C5' C4' H5'' 239.3 240.5
H5' C5' C4' H5'' 119.2 120.9
O4' C4' C5' C3' 239.9 242.3
O4' C4' C5' H4' 121.2 117.0
C5' C4' O4' C1' 116.8 116.0
C3' C4' C5' H4' 241.3 234.7
C5' C4' C3' O3' 143.3 152.1
C5' C4' C3' C2' 262.1 267.4
C5' C4' C3' H3' 24.7 31.2
O5' C5' H5' C4' 241.5 240.8
O5' C5' H5' H5'' 120.8 119.6
C4' C5' H5' H5'' 239.3 238.8
H5' C5' C4' O4' 23.9 302.2
H5' C5' C4' C3' 144.0 60.0
H5' C5' C4' H4' 262.7 185.3
O5' C5' H5'' C4' 119.0 119.2
O5' C5' H5'' H5' 239.5 240.4
C4' C5' H5'' H5' 120.5 121.2
H5'' C5' C4' O4' 264.7 181.3
H5'' C5' C4' C3' 24.8 299.1
H5'' C5' C4' H4' 143.5 64.3
O4' C4' C5' H5' 23.9 302.2
O4' C4' C5' H5'' 264.7 181.3
C5' C4' O4' C3' 122.7 121.5
C5' C4' O4' H4' 241.5 242.0
C3' C4' O4' H4' 118.8 120.5
O4' C4' C3' O3' 263.7 270.6
O4' C4' C3' C2' 22.4 25.9
O4' C4' C3' H3' 145.0 149.7
C4' O4' C1' C2' 346.5 342.7
C4' O4' C1' N9 225.3 218.2
C4' O4' C1' H1' 105.6 103.1
C3' C4' C5' H5' 144.0 60.0
C3' C4' C5' H5'' 24.8 299.1
C5' C4' C3' O4' 239.6 241.5
C5' C4' C3' H4' 118.4 123.8
O4' C4' C3' H4' 238.8 242.3
C3' C4' O4' C1' 354.1 354.5
O3' C3' C4' C2' 241.3 244.7
O3' C3' C4' H3' 118.7 120.9
C4' C3' O3' HO3' 308.2 257.5
C2' C3' C4' H3' 237.4 236.3
C4' C3' C2' C1' 331.5 325.2
C4' C3' C2' H2' 91.5 82.2
C4' C3' C2' H2'' 208.8 204.8
H4' C4' C5' H5' 262.7 185.3
H4' C4' C5' H5'' 143.5 64.3
C5' C4' H4' O4' 119.3 117.2
C5' C4' H4' C3' 238.3 234.3
O4' C4' H4' C3' 119.1 117.2
H4' C4' O4' C1' 235.3 234.0
H4' C4' C3' O3' 24.9 28.3
H4' C4' C3' C2' 143.6 143.6
H4' C4' C3' H3' 266.2 267.4
C1' O4' C4' C3' 354.1 354.5
C1' O4' C4' H4' 235.3 234.0
C3' C2' C1' O4' 26.9 32.7
O4' C1' C2' H2' 267.0 276.0
O4' C1' C2' H2'' 149.6 154.9
C2' C1' O4' N9 121.3 124.5
C2' C1' O4' H1' 241.0 239.7
N9 C1' O4' H1' 119.7 115.2
O4' C1' N9 C8 71.4 33.5
O4' C1' N9 C4 258.6 213.4
O3' C3' C4' H4' 24.9 28.3
C4' C3' O3' C2' 113.3 111.9
C4' C3' O3' H3' 236.4 235.4
C2' C3' O3' H3' 123.1 123.5
O3' C3' C2' C1' 89.6 81.3
O3' C3' C2' H2' 209.6 198.4
O3' C3' C2' H2'' 327.0 320.9
C2' C3' C4' H4' 143.6 143.6
C4' C3' C2' O3' 241.9 243.8
C4' C3' C2' H3' 123.2 123.9
O4' C1' C2' C3' 26.9 32.7
O3' C3' C2' H3' 241.3 240.1
C2' C3' O3' HO3' 195.0 145.5
C1' C2' C3' H2' 240.0 243.0
C1' C2' C3' H2'' 122.6 120.4
C3' C2' C1' N9 145.4 154.5
C3' C2' C1' H1' 265.1 274.8
H2' C2' C3' H2'' 242.7 237.5
H3' C3' C4' H4' 266.2 267.4
C4' C3' H3' O3' 121.4 121.9
C4' C3' H3' C2' 243.4 242.1
O3' C3' H3' C2' 122.0 120.2
H3' C3' O3' HO3' 71.9 22.0
H3' C3' C2' C1' 208.3 201.2
H3' C3' C2' H2' 328.3 318.3
H3' C3' C2' H2'' 85.7 80.8
HO3' O3' C3' C2' 195.0 145.5
HO3' O3' C3' H3' 71.9 22.0
O4' C1' C2' N9 241.5 238.2
O4' C1' C2' H1' 121.8 117.9
C1' C2' C3' H3' 208.3 201.2
C3' C2' C1' H2' 120.0 116.7
C3' C2' C1' H2'' 237.4 237.8
H2' C2' C1' H2'' 117.4 121.1
N9 C1' C2' H1' 240.3 239.7
C2' C1' N9 C8 312.3 273.4
C2' C1' N9 C4 139.4 93.4
H2' C2' C3' H3' 328.3 318.3
C3' C2' H2' C1' 246.0 248.6
C3' C2' H2' H2'' 123.0 125.7
C1' C2' H2' H2'' 237.0 237.1
H2' C2' C1' N9 25.4 37.8
H2' C2' C1' H1' 145.1 158.1
H2'' C2' C3' H3' 85.7 80.8
C3' C2' H2'' C1' 116.1 114.6
C3' C2' H2'' H2' 238.1 236.7
C1' C2' H2'' H2' 122.0 122.1
H2'' C2' C1' N9 268.0 276.7
H2'' C2' C1' H1' 27.7 37.0
O4' C1' N9 C2' 119.2 120.0
O4' C1' N9 H1' 238.2 243.5
N9 C1' C2' H2' 25.4 37.8
N9 C1' C2' H2'' 268.0 276.7
C2' C1' N9 H1' 119.0 123.5
C8 N9 C1' C4 172.9 180.0
C1' N9 C8 N7 183.6 180.0
C1' N9 C8 H8 3.6 360.0
C1' N9 C4 C5 178.0 180.1
C1' N9 C4 N3 359.8 0.0
O4' C1' H1' C2' 240.5 242.9
O4' C1' H1' N9 118.8 117.8
H1' C1' C2' H2' 145.1 158.1
H1' C1' C2' H2'' 27.7 37.0
C2' C1' H1' N9 238.4 234.9
H1' C1' N9 C8 193.2 150.0
H1' C1' N9 C4 20.4 330.0
C8 N9 C1' H1' 193.2 150.0
C1' N9 C8 C4 186.1 180.0
C8 N9 C4 C5 3.7 0.0
C8 N9 C4 N3 185.5 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.0 360.0
C4 N9 C1' H1' 20.4 330.0
C1' N9 C4 C8 174.2 180.0
C4 N9 C8 N7 357.5 0.0
C4 N9 C8 H8 177.5 180.0
N7 C5 C4 N9 356.0 359.9
C6 C5 C4 N9 175.7 180.0
C5 C4 N9 N3 178.2 180.0
C2 N3 C4 N9 181.9 180.0
N7 C8 N9 C4 357.5 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C4 2.5 0.1
C8 N7 C5 C6 182.9 180.0
H8 C8 N9 C4 177.5 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 180.0 180.0
N9 C4 C5 N7 356.0 359.9
C5 N7 C8 H8 180.0 180.0
C6 C5 N7 C4 180.5 179.9
N7 C5 C4 N3 174.3 180.0
N7 C5 C6 O6 1.0 0.1
N7 C5 C6 N1 178.6 180.1
N9 C4 C5 N3 181.8 180.0
N7 C5 C4 C6 180.4 179.9
C4 C5 C6 O6 181.5 180.0
C4 C5 C6 N1 359.1 360.0
C2 N3 C4 C5 4.0 359.9
N9 C4 C5 C6 175.7 180.0
N7 C5 C6 C4 179.5 180.1
C6 C5 C4 N3 353.9 0.1
O6 C6 C5 N1 182.4 180.0
C5 C6 N1 C2 9.5 360.0
C5 C6 N1 CM1 195.4 180.0
O6 C6 C5 C4 181.5 180.0
C5 C6 O6 N1 177.5 180.0
O6 C6 N1 C2 187.4 179.9
O6 C6 N1 CM1 13.3 359.9
N1 C6 C5 C4 359.1 360.0
C5 C6 N1 O6 182.1 180.0
CM1 N1 C6 C2 185.9 180.0
C6 N1 C2 N3 347.7 0.0
C6 N1 C2 N2 160.0 180.0
C6 N1 CM1 HM11 78.2 46.4
C6 N1 CM1 HM12 198.2 286.4
C6 N1 CM1 HM13 318.2 166.3
C6 N1 C2 CM1 186.2 180.0
C2 N1 CM1 HM11 263.9 226.4
C2 N1 CM1 HM12 23.9 106.4
C2 N1 CM1 HM13 143.9 346.4
N2 C2 N1 N3 172.3 180.0
N1 C2 N3 C4 4.9 360.0
N1 C2 N2 H21 7.5 164.4
N1 C2 N2 H22 187.5 344.5
C6 N1 CM1 C2 174.3 180.0
CM1 N1 C2 N3 161.6 180.0
CM1 N1 C2 N2 333.9 360.0
HM11 CM1 N1 HM12 240.0 120.0
HM11 CM1 N1 HM13 120.0 240.0
HM12 CM1 N1 HM13 240.0 120.0
HM11 CM1 N1 C2 263.9 226.4
N1 CM1 HM11 HM12 120.0 239.1
N1 CM1 HM11 HM13 240.0 120.8
HM12 CM1 HM11 HM13 120.0 241.7
HM12 CM1 N1 C2 23.9 106.4
N1 CM1 HM12 HM11 240.0 120.8
N1 CM1 HM12 HM13 120.0 239.1
HM11 CM1 HM12 HM13 240.0 118.3
HM13 CM1 N1 C2 143.9 346.4
N1 CM1 HM13 HM11 120.0 239.2
N1 CM1 HM13 HM12 240.0 120.9
HM11 CM1 HM13 HM12 120.0 241.7
N9 C4 N3 C2 181.9 180.0
C5 C4 N3 C2 4.0 359.9
N1 C2 N3 N2 172.3 180.0
N3 C2 N2 H21 180.0 344.4
N3 C2 N2 H22 360.0 164.5
N1 C2 N2 N3 187.5 180.0
N2 C2 N3 C4 192.6 180.0
H21 N2 C2 H22 180.0 180.0
H21 N2 C2 N3 180.0 344.4
C2 N2 H21 H22 180.0 180.1
H22 N2 C2 N3 360.0 164.5
C2 N2 H22 H21 180.0 179.9
N9 C4 N3 C5 177.9 180.0