Atom Nomenclature for MFX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for MFX

Atom Name (V3) Atom Name (V2)
F F
O01 O01
O02 O02
O03 O03
O O
N01 N01
N02 N02
N N
C01 C01
C02 C02
C03 C03
C04 C04
C05 C05
C06 C06
C07 C07
C08 C08
C09 C09
C10 C10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C C
H01 H01
H02 H02
H03 H03
H03A H03A
H04 H04
H04A H04A
H05 H05
H05A H05A
H06 H06
H07 H07
H07A H07A
HN02 HN02
H08 H08
H08A H08A
H09 H09
H09A H09A
H10 H10
H10A H10A
H16 H16
H17 H17
H H
HA HA
HB HB
HO03 HO03