PDB Chemical Component MFO

Ideal Model

Chemical Description

Name [(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(naphthalen-2-yl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Formula C22 H23 N6 O8 P
Formal charge 0
Molecular weight 530.427 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 60
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP1 OP2 O1
Bond count 64
Aromatic bond count 16

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(naphthalen-2-yl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)N(c1ccc2ccccc2c1)c3nc4C(=O)N=C(N)Nc4n3[C@H]5C[C@H](O)[C@@H](CO[P](O)(O)=O)O5
SMILES (CACTVS) CC(=O)N(c1ccc2ccccc2c1)c3nc4C(=O)N=C(N)Nc4n3[CH]5C[CH](O)[CH](CO[P](O)(O)=O)O5
Stereo SMILES (OpenEye) CC(=O)N(c1ccc2ccccc2c1)c3nc4c(n3[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O)NC(=NC4=O)N
InChI descriptor InChI=1S/C22H23N6O8P/c1-11(29)27(14-7-6-12-4-2-3-5-13(12)8-14)22-24-18-19(25-21(23)26-20(18)31)28(22)17-9-15(30)16(36-17)10-35-37(32,33)34/h2-8,15-17,30H,9-10H2,1H3,(H2,32,33,34)(H3,23,25,26,31)/t15-,16+,17+/m0/s1
InChIKey descriptor AEEKNUIQRYLODW-GVDBMIGSSA-N

Status Information

Last modified 2019-05-07
Created 2016-04-06
Release status REL
Model PDB code 5G33
Processing site EBI