PDB Chemical Component MFO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MFO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C19 |
C18 |
1.396 |
1.361 |
| C19 |
C20 |
1.392 |
1.394 |
| C18 |
C15 |
1.396 |
1.405 |
| C20 |
C21 |
1.394 |
1.361 |
| C15 |
C14 |
1.391 |
1.406 |
| C15 |
C16 |
1.392 |
1.418 |
| C14 |
C13 |
1.393 |
1.359 |
| C21 |
C16 |
1.397 |
1.406 |
| C16 |
C17 |
1.392 |
1.404 |
| C13 |
C12 |
1.395 |
1.400 |
| C17 |
C12 |
1.395 |
1.377 |
| C12 |
N4 |
1.408 |
1.400 |
| N4 |
C9 |
1.336 |
1.348 |
| N4 |
C8 |
1.365 |
1.390 |
| C10 |
C9 |
1.505 |
1.507 |
| C9 |
O11 |
1.223 |
1.213 |
| N7 |
C8 |
1.349 |
1.309 |
| N7 |
C5 |
1.347 |
1.357 |
| C8 |
N9 |
1.337 |
1.368 |
| O6 |
C6 |
1.252 |
1.221 |
| C5 |
C6 |
1.475 |
1.465 |
| C5 |
C4 |
1.485 |
1.389 |
| N9 |
C1' |
1.489 |
1.465 |
| N9 |
C4 |
1.341 |
1.364 |
| C6 |
N1 |
1.339 |
1.342 |
| C1' |
C2' |
1.512 |
1.545 |
| C1' |
O4' |
1.435 |
1.445 |
| C4 |
N3 |
1.350 |
1.371 |
| C2' |
C3' |
1.517 |
1.545 |
| O4' |
C4' |
1.429 |
1.444 |
| N1 |
C2 |
1.345 |
1.316 |
| N3 |
C2 |
1.354 |
1.359 |
| C3' |
C4' |
1.520 |
1.545 |
| C3' |
O3' |
1.428 |
1.429 |
| C2 |
N2 |
1.348 |
1.370 |
| C4' |
C5' |
1.533 |
1.530 |
| O5' |
C5' |
1.438 |
1.429 |
| O5' |
P |
1.627 |
1.610 |
| P |
OP1 |
1.507 |
1.480 |
| P |
OP2 |
1.508 |
1.610 |
| P |
O1 |
1.585 |
1.609 |
| C21 |
H1 |
1.080 |
1.081 |
| C10 |
H2 |
1.100 |
1.091 |
| C10 |
H3 |
1.100 |
1.090 |
| C10 |
H4 |
1.100 |
1.090 |
| C20 |
H5 |
1.080 |
1.080 |
| N3 |
H6 |
1.000 |
0.970 |
| C14 |
H7 |
1.080 |
1.080 |
| C13 |
H8 |
1.080 |
1.080 |
| C19 |
H9 |
1.080 |
1.080 |
| C18 |
H10 |
1.080 |
1.080 |
| N2 |
H11 |
1.000 |
0.970 |
| N2 |
H12 |
1.000 |
0.971 |
| C17 |
H13 |
1.080 |
1.080 |
| C5' |
H14 |
1.100 |
1.089 |
| C5' |
H15 |
1.100 |
1.090 |
| C4' |
H16 |
1.100 |
1.090 |
| C3' |
H17 |
1.100 |
1.090 |
| O3' |
H18 |
0.950 |
0.966 |
| C2' |
H19 |
1.100 |
1.089 |
| C2' |
H20 |
1.100 |
1.089 |
| C1' |
H21 |
1.100 |
1.090 |
| OP2 |
H22 |
0.950 |
0.967 |
| O1 |
H23 |
0.950 |
0.968 |
Bond Angles for MFO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C18 |
C19 |
H9 |
120.0 |
119.5 |
| C19 |
C18 |
H10 |
119.7 |
120.2 |
| C19 |
C20 |
H5 |
120.3 |
119.5 |
| C18 |
C15 |
C16 |
119.6 |
119.3 |
| C20 |
C21 |
C16 |
120.8 |
119.7 |
| C20 |
C21 |
H1 |
119.6 |
120.1 |
| C14 |
C15 |
C16 |
120.2 |
119.5 |
| C15 |
C14 |
C13 |
119.9 |
119.9 |
| C15 |
C14 |
H7 |
120.1 |
120.1 |
| C21 |
C16 |
C15 |
119.8 |
119.4 |
| C15 |
C16 |
C17 |
119.8 |
119.5 |
| C13 |
C14 |
H7 |
120.1 |
120.0 |
| C14 |
C13 |
H8 |
119.9 |
119.5 |
| C21 |
C16 |
C17 |
120.4 |
121.2 |
| C16 |
C21 |
H1 |
119.6 |
120.2 |
| C16 |
C17 |
H13 |
119.9 |
120.2 |
| N4 |
C9 |
C10 |
115.5 |
120.0 |
| N4 |
C9 |
O11 |
122.0 |
120.0 |
| N4 |
C8 |
N9 |
121.5 |
125.3 |
| C10 |
C9 |
O11 |
122.5 |
120.0 |
| C9 |
C10 |
H2 |
109.5 |
109.5 |
| C9 |
C10 |
H3 |
109.5 |
109.5 |
| C9 |
C10 |
H4 |
109.5 |
109.5 |
| C8 |
N9 |
C1' |
126.5 |
126.3 |
| C5 |
C6 |
N1 |
118.0 |
118.6 |
| C5 |
C4 |
N3 |
118.2 |
118.9 |
| N9 |
C1' |
H21 |
109.5 |
110.4 |
| C6 |
N1 |
C2 |
121.8 |
121.3 |
| C1' |
C2' |
H19 |
110.8 |
110.5 |
| C1' |
C2' |
H20 |
110.8 |
110.6 |
| O4' |
C1' |
H21 |
110.2 |
110.3 |
| C4 |
N3 |
C2 |
120.7 |
120.6 |
| C4 |
N3 |
H6 |
119.7 |
119.8 |
| C2' |
C3' |
H17 |
108.9 |
110.6 |
| O4' |
C4' |
H16 |
110.0 |
110.4 |
| N1 |
C2 |
N2 |
118.7 |
118.8 |
| N3 |
C2 |
N2 |
117.5 |
118.8 |
| C3' |
C4' |
H16 |
108.8 |
110.4 |
| O3' |
C3' |
H17 |
110.2 |
110.5 |
| C3' |
O3' |
H18 |
109.5 |
114.0 |
| C2 |
N2 |
H11 |
120.0 |
120.0 |
| C2 |
N2 |
H12 |
120.0 |
120.0 |
| C4' |
C5' |
H14 |
108.5 |
109.5 |
| C4' |
C5' |
H15 |
108.5 |
109.5 |
| O5' |
C5' |
H14 |
108.5 |
109.5 |
| O5' |
C5' |
H15 |
108.5 |
109.4 |
| O5' |
P |
OP2 |
111.8 |
109.5 |
| O5' |
P |
O1 |
104.0 |
109.5 |
| OP1 |
P |
OP2 |
112.9 |
109.4 |
| OP1 |
P |
O1 |
107.6 |
109.5 |
| OP2 |
P |
O1 |
108.3 |
109.5 |
| P |
OP2 |
H22 |
109.5 |
114.0 |
| P |
O1 |
H23 |
109.5 |
114.0 |
| H2 |
C10 |
H3 |
109.5 |
109.5 |
| H2 |
C10 |
H4 |
109.5 |
109.4 |
| H3 |
C10 |
H4 |
109.5 |
109.5 |
| H11 |
N2 |
H12 |
120.0 |
120.0 |
| H14 |
C5' |
H15 |
109.5 |
109.5 |
| H19 |
C2' |
H20 |
109.5 |
110.5 |
Torsion Angles for MFO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C18 |
C19 |
C20 |
H5 |
179.9 |
180.0 |
| C19 |
C18 |
C15 |
C16 |
0.1 |
0.0 |
| C19 |
C20 |
C21 |
C16 |
0.1 |
359.9 |
| C19 |
C20 |
C21 |
H1 |
180.1 |
179.7 |
| C14 |
C15 |
C18 |
C16 |
179.8 |
180.0 |
| C18 |
C15 |
C14 |
H7 |
359.9 |
360.0 |
| C21 |
C16 |
C15 |
C18 |
359.9 |
360.0 |
| C18 |
C15 |
C16 |
C17 |
180.0 |
180.3 |
| C20 |
C21 |
C16 |
C15 |
0.0 |
0.1 |
| C20 |
C21 |
C16 |
C17 |
179.9 |
179.7 |
| C16 |
C21 |
C20 |
H1 |
180.0 |
180.2 |
| C18 |
C15 |
C14 |
C16 |
180.2 |
180.0 |
| C21 |
C16 |
C15 |
C14 |
180.1 |
179.9 |
| C14 |
C15 |
C16 |
C17 |
0.2 |
0.3 |
| C13 |
C14 |
C15 |
H7 |
180.0 |
180.1 |
| C15 |
C14 |
C13 |
H8 |
180.6 |
180.0 |
| C16 |
C15 |
C14 |
C13 |
359.7 |
0.0 |
| C16 |
C15 |
C14 |
H7 |
179.7 |
180.0 |
| C21 |
C16 |
C15 |
C17 |
179.9 |
179.6 |
| C15 |
C16 |
C21 |
H1 |
180.0 |
180.3 |
| C15 |
C16 |
C17 |
H13 |
179.6 |
180.0 |
| C13 |
C14 |
C15 |
C16 |
359.7 |
0.0 |
| C15 |
C14 |
C13 |
H7 |
180.0 |
179.9 |
| C18 |
C15 |
C16 |
C21 |
359.9 |
360.0 |
| C20 |
C21 |
C16 |
H1 |
180.0 |
179.8 |
| C14 |
C15 |
C16 |
C21 |
180.1 |
179.9 |
| C15 |
C16 |
C21 |
C17 |
180.1 |
180.4 |
| C21 |
C16 |
C17 |
H13 |
359.7 |
0.4 |
| C21 |
C16 |
C17 |
C15 |
180.1 |
180.4 |
| C17 |
C16 |
C21 |
H1 |
359.9 |
359.9 |
| C21 |
C16 |
C17 |
C12 |
179.7 |
179.7 |
| C12 |
N4 |
C9 |
O11 |
263.3 |
5.1 |
| C12 |
N4 |
C8 |
N9 |
181.0 |
266.9 |
| C9 |
N4 |
C8 |
N9 |
358.8 |
86.8 |
| C10 |
C9 |
N4 |
O11 |
180.8 |
180.0 |
| N4 |
C9 |
C10 |
H2 |
179.1 |
354.8 |
| N4 |
C9 |
C10 |
H3 |
299.2 |
114.8 |
| N4 |
C9 |
C10 |
H4 |
59.1 |
234.9 |
| N4 |
C8 |
N9 |
C1' |
0.5 |
0.1 |
| N4 |
C9 |
C10 |
O11 |
179.2 |
180.0 |
| H2 |
C10 |
C9 |
H3 |
240.0 |
240.0 |
| H2 |
C10 |
C9 |
H4 |
120.0 |
119.9 |
| H3 |
C10 |
C9 |
H4 |
240.0 |
239.9 |
| N4 |
C9 |
O11 |
C10 |
180.9 |
180.0 |
| O11 |
C9 |
C10 |
H2 |
360.0 |
174.8 |
| O11 |
C9 |
C10 |
H3 |
120.0 |
294.8 |
| O11 |
C9 |
C10 |
H4 |
240.0 |
54.9 |
| C8 |
N9 |
C1' |
H21 |
357.5 |
342.6 |
| C5 |
C6 |
N1 |
C2 |
359.8 |
0.1 |
| C4 |
C5 |
C6 |
N1 |
359.9 |
359.9 |
| C5 |
C4 |
N3 |
C2 |
0.0 |
360.0 |
| C5 |
C4 |
N3 |
H6 |
180.0 |
180.0 |
| N9 |
C1' |
C2' |
H19 |
231.1 |
24.2 |
| N9 |
C1' |
C2' |
H20 |
352.8 |
261.5 |
| O4' |
C1' |
N9 |
H21 |
236.0 |
237.8 |
| N9 |
C4 |
N3 |
H6 |
0.7 |
0.1 |
| C6 |
N1 |
C2 |
N2 |
180.1 |
180.0 |
| C8 |
N9 |
C1' |
C2' |
115.5 |
104.8 |
| C1' |
C2' |
C3' |
H17 |
268.5 |
241.3 |
| H19 |
C2' |
C1' |
H20 |
238.3 |
122.7 |
| C8 |
N9 |
C1' |
O4' |
233.5 |
220.3 |
| N9 |
C1' |
O4' |
H21 |
123.6 |
122.3 |
| O4' |
C1' |
C2' |
H19 |
108.7 |
265.3 |
| O4' |
C1' |
C2' |
H20 |
230.3 |
142.6 |
| C1' |
O4' |
C4' |
H16 |
268.5 |
281.5 |
| C4 |
N3 |
C2 |
N2 |
180.0 |
180.0 |
| C2' |
C3' |
C4' |
H16 |
86.8 |
95.0 |
| O3' |
C3' |
C2' |
H17 |
238.6 |
237.3 |
| C2' |
C3' |
O3' |
H18 |
180.0 |
65.3 |
| C3' |
C4' |
O4' |
H16 |
116.3 |
118.9 |
| O4' |
C4' |
C5' |
H14 |
168.1 |
308.0 |
| O4' |
C4' |
C5' |
H15 |
286.9 |
188.0 |
| N3 |
C2 |
N1 |
N2 |
180.3 |
179.9 |
| N1 |
C2 |
N2 |
H11 |
360.0 |
180.0 |
| N1 |
C2 |
N2 |
H12 |
180.0 |
359.9 |
| C6 |
N1 |
C2 |
N3 |
0.4 |
359.9 |
| C4 |
N3 |
C2 |
H6 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
N2 |
179.7 |
180.1 |
| N3 |
C2 |
N2 |
H11 |
179.7 |
0.0 |
| N3 |
C2 |
N2 |
H12 |
359.8 |
180.0 |
| O4' |
C4' |
C3' |
H16 |
242.8 |
241.1 |
| C3' |
C4' |
C5' |
H14 |
285.2 |
63.5 |
| C3' |
C4' |
C5' |
H15 |
44.0 |
303.4 |
| C2' |
C3' |
O3' |
H17 |
120.7 |
122.7 |
| O3' |
C3' |
C4' |
H16 |
326.0 |
336.4 |
| H11 |
N2 |
C2 |
H12 |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H14 |
239.4 |
120.0 |
| O5' |
C5' |
C4' |
H15 |
120.6 |
240.0 |
| H14 |
C5' |
C4' |
H15 |
241.1 |
120.0 |
| C4' |
C5' |
O5' |
H14 |
120.6 |
240.0 |
| C4' |
C5' |
O5' |
H15 |
239.4 |
120.0 |
| C5' |
O5' |
P |
OP2 |
1.7 |
185.0 |
| C5' |
O5' |
P |
O1 |
118.3 |
64.9 |
| H14 |
C5' |
O5' |
H15 |
118.9 |
240.0 |
| OP1 |
P |
O5' |
OP2 |
232.3 |
120.0 |
| OP1 |
P |
O5' |
O1 |
115.8 |
240.0 |
| OP2 |
P |
O5' |
O1 |
243.4 |
120.0 |
| O5' |
P |
OP2 |
H22 |
233.0 |
180.0 |
| O5' |
P |
O1 |
H23 |
118.7 |
60.1 |
| O5' |
P |
OP1 |
OP2 |
127.0 |
240.0 |
| O5' |
P |
OP1 |
O1 |
246.5 |
120.0 |
| OP2 |
P |
OP1 |
O1 |
119.4 |
240.0 |
| OP1 |
P |
OP2 |
H22 |
360.0 |
60.0 |
| OP1 |
P |
O1 |
H23 |
0.0 |
180.1 |
| O5' |
P |
OP2 |
O1 |
113.9 |
240.0 |
| OP1 |
P |
OP2 |
O1 |
240.9 |
120.0 |
| OP2 |
P |
O1 |
H23 |
237.7 |
300.0 |
| O5' |
P |
O1 |
OP2 |
241.0 |
120.0 |
| OP1 |
P |
O1 |
OP2 |
122.4 |
240.0 |
| O1 |
P |
OP2 |
H22 |
119.0 |
300.0 |
| C20 |
C21 |
H1 |
C16 |
180.0 |
180.2 |
| H1 |
C21 |
C16 |
C15 |
180.0 |
180.3 |
| H1 |
C21 |
C16 |
C17 |
359.9 |
359.9 |
| H2 |
C10 |
C9 |
O11 |
360.0 |
174.8 |
| C9 |
C10 |
H2 |
H3 |
120.0 |
120.1 |
| C9 |
C10 |
H2 |
H4 |
240.0 |
240.0 |
| H3 |
C10 |
H2 |
H4 |
120.0 |
120.0 |
| H3 |
C10 |
C9 |
O11 |
120.0 |
294.8 |
| C9 |
C10 |
H3 |
H2 |
240.0 |
240.0 |
| C9 |
C10 |
H3 |
H4 |
120.0 |
120.1 |
| H2 |
C10 |
H3 |
H4 |
240.0 |
240.1 |
| H4 |
C10 |
C9 |
O11 |
240.0 |
54.9 |
| C9 |
C10 |
H4 |
H2 |
120.0 |
120.0 |
| C9 |
C10 |
H4 |
H3 |
240.0 |
239.9 |
| H2 |
C10 |
H4 |
H3 |
120.0 |
120.0 |
| H5 |
C20 |
C21 |
C16 |
180.1 |
179.9 |
| H5 |
C20 |
C21 |
H1 |
0.1 |
359.7 |
| C4 |
N3 |
H6 |
C2 |
180.0 |
180.0 |
| H6 |
N3 |
C2 |
N2 |
360.0 |
360.0 |
| H7 |
C14 |
C15 |
C16 |
179.7 |
180.0 |
| C15 |
C14 |
H7 |
C13 |
180.0 |
180.1 |
| H7 |
C14 |
C13 |
H8 |
0.6 |
0.0 |
| H8 |
C13 |
C14 |
H7 |
0.6 |
0.0 |
| H9 |
C19 |
C18 |
H10 |
0.1 |
0.0 |
| H9 |
C19 |
C20 |
H5 |
359.9 |
360.0 |
| H10 |
C18 |
C19 |
H9 |
0.1 |
0.0 |
| H10 |
C18 |
C15 |
C16 |
180.1 |
180.0 |
| C2 |
N2 |
H11 |
H12 |
180.0 |
180.0 |
| C2 |
N2 |
H12 |
H11 |
180.0 |
180.0 |
| C4' |
C5' |
H14 |
H15 |
118.2 |
240.0 |
| O5' |
C5' |
H14 |
H15 |
241.8 |
119.9 |
| C4' |
C5' |
H15 |
H14 |
241.8 |
120.0 |
| O5' |
C5' |
H15 |
H14 |
118.3 |
240.0 |
| H16 |
C4' |
C5' |
H14 |
45.8 |
185.7 |
| H16 |
C4' |
C5' |
H15 |
164.7 |
65.6 |
| H17 |
C3' |
C4' |
H16 |
203.2 |
213.7 |
| H17 |
C3' |
O3' |
H18 |
59.3 |
302.6 |
| H18 |
O3' |
C3' |
H17 |
59.3 |
302.6 |
| C1' |
C2' |
H19 |
H20 |
122.4 |
237.2 |
| H19 |
C2' |
C3' |
H17 |
149.3 |
359.9 |
| C1' |
C2' |
H20 |
H19 |
237.6 |
122.7 |
| H20 |
C2' |
C3' |
H17 |
27.7 |
122.6 |
| H21 |
C1' |
C2' |
H19 |
349.4 |
146.5 |
| H21 |
C1' |
C2' |
H20 |
111.1 |
23.8 |
| H22 |
OP2 |
P |
O1 |
119.0 |
300.0 |