PDB Chemical Component MES
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MES
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O1 |
C2 |
1.440 |
1.427 |
O1 |
C6 |
1.443 |
1.428 |
C2 |
C3 |
1.525 |
1.529 |
C2 |
H21 |
1.116 |
1.091 |
C2 |
H22 |
1.115 |
1.090 |
C3 |
N4 |
1.512 |
1.470 |
C3 |
H31 |
1.115 |
1.091 |
C3 |
H32 |
1.115 |
1.090 |
N4 |
C5 |
1.525 |
1.471 |
N4 |
C7 |
1.530 |
1.469 |
N4 |
HN4 |
1.019 |
1.009 |
C5 |
C6 |
1.530 |
1.529 |
C5 |
H51 |
1.115 |
1.090 |
C5 |
H52 |
1.114 |
1.090 |
C6 |
H61 |
1.114 |
1.090 |
C6 |
H62 |
1.115 |
1.091 |
C7 |
C8 |
1.525 |
1.530 |
C7 |
H71 |
1.116 |
1.089 |
C7 |
H72 |
1.115 |
1.091 |
C8 |
S |
1.800 |
1.813 |
C8 |
H81 |
1.115 |
1.090 |
C8 |
H82 |
1.115 |
1.090 |
S |
O1S |
1.465 |
1.455 |
S |
O2S |
1.466 |
1.455 |
S |
O3S |
1.445 |
1.455 |
Bond Angles for MES
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
O1 |
C6 |
106.5 |
107.3 |
O1 |
C2 |
C3 |
108.8 |
109.8 |
O1 |
C2 |
H21 |
112.5 |
109.4 |
O1 |
C2 |
H22 |
112.5 |
109.5 |
O1 |
C6 |
C5 |
107.8 |
109.8 |
O1 |
C6 |
H61 |
112.8 |
109.4 |
O1 |
C6 |
H62 |
112.8 |
109.4 |
C3 |
C2 |
H21 |
112.4 |
109.4 |
C3 |
C2 |
H22 |
112.5 |
109.4 |
C2 |
C3 |
N4 |
107.8 |
109.3 |
C2 |
C3 |
H31 |
112.8 |
109.5 |
C2 |
C3 |
H32 |
112.9 |
109.5 |
H21 |
C2 |
H22 |
98.0 |
109.3 |
N4 |
C3 |
H31 |
112.9 |
109.5 |
N4 |
C3 |
H32 |
112.9 |
109.5 |
C3 |
N4 |
C5 |
109.7 |
109.1 |
C3 |
N4 |
C7 |
107.2 |
109.5 |
C3 |
N4 |
HN4 |
110.9 |
109.6 |
H31 |
C3 |
H32 |
97.6 |
109.5 |
C5 |
N4 |
C7 |
110.0 |
109.6 |
C5 |
N4 |
HN4 |
108.2 |
109.5 |
N4 |
C5 |
C6 |
106.7 |
109.3 |
N4 |
C5 |
H51 |
113.2 |
109.4 |
N4 |
C5 |
H52 |
113.2 |
109.6 |
C7 |
N4 |
HN4 |
110.7 |
109.5 |
N4 |
C7 |
C8 |
105.9 |
109.5 |
N4 |
C7 |
H71 |
113.6 |
109.5 |
N4 |
C7 |
H72 |
113.5 |
109.5 |
C6 |
C5 |
H51 |
113.2 |
109.5 |
C6 |
C5 |
H52 |
113.3 |
109.5 |
C5 |
C6 |
H61 |
112.8 |
109.4 |
C5 |
C6 |
H62 |
112.8 |
109.4 |
H51 |
C5 |
H52 |
97.2 |
109.5 |
H61 |
C6 |
H62 |
97.7 |
109.4 |
C8 |
C7 |
H71 |
113.6 |
109.4 |
C8 |
C7 |
H72 |
113.6 |
109.4 |
C7 |
C8 |
S |
111.1 |
109.5 |
C7 |
C8 |
H81 |
111.6 |
109.4 |
C7 |
C8 |
H82 |
111.6 |
109.5 |
H71 |
C7 |
H72 |
96.8 |
109.5 |
S |
C8 |
H81 |
111.6 |
109.5 |
S |
C8 |
H82 |
111.6 |
109.5 |
C8 |
S |
O1S |
106.5 |
109.3 |
C8 |
S |
O2S |
102.4 |
109.3 |
C8 |
S |
O3S |
107.5 |
109.3 |
H81 |
C8 |
H82 |
98.8 |
109.4 |
O1S |
S |
O2S |
111.6 |
109.6 |
O1S |
S |
O3S |
112.4 |
109.6 |
O2S |
S |
O3S |
115.5 |
109.6 |
Torsion Angles for MES
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
O1 |
C6 |
C5 |
289.3 |
295.6 |
C2 |
O1 |
C6 |
H61 |
54.6 |
55.6 |
C2 |
O1 |
C6 |
H62 |
164.1 |
175.5 |
C3 |
C2 |
O1 |
H21 |
234.8 |
120.1 |
C3 |
C2 |
O1 |
H22 |
125.3 |
239.9 |
O1 |
C2 |
C3 |
N4 |
298.0 |
298.6 |
O1 |
C2 |
C3 |
H31 |
63.3 |
178.7 |
O1 |
C2 |
C3 |
H32 |
172.7 |
58.6 |
H21 |
C2 |
O1 |
H22 |
250.5 |
119.8 |
C6 |
O1 |
C2 |
C3 |
69.3 |
64.4 |
C6 |
O1 |
C2 |
H21 |
194.6 |
304.3 |
C6 |
O1 |
C2 |
H22 |
304.1 |
184.6 |
N4 |
C5 |
C6 |
O1 |
64.3 |
61.3 |
O1 |
C6 |
C5 |
H51 |
299.1 |
301.4 |
O1 |
C6 |
C5 |
H52 |
189.6 |
181.3 |
C5 |
C6 |
O1 |
H61 |
234.7 |
239.9 |
C5 |
C6 |
O1 |
H62 |
125.2 |
120.1 |
H61 |
C6 |
O1 |
H62 |
250.5 |
240.2 |
C3 |
C2 |
O1 |
C6 |
69.3 |
64.4 |
O1 |
C2 |
C3 |
H21 |
125.3 |
239.9 |
O1 |
C2 |
C3 |
H22 |
234.7 |
120.1 |
H21 |
C2 |
C3 |
H22 |
109.4 |
240.2 |
N4 |
C3 |
C2 |
H31 |
234.7 |
119.9 |
N4 |
C3 |
C2 |
H32 |
125.3 |
240.0 |
C2 |
C3 |
N4 |
C5 |
56.3 |
56.6 |
C2 |
C3 |
N4 |
C7 |
175.8 |
176.6 |
C2 |
C3 |
N4 |
HN4 |
296.8 |
296.7 |
H31 |
C3 |
C2 |
H32 |
250.6 |
120.1 |
H21 |
C2 |
O1 |
C6 |
194.6 |
304.3 |
O1 |
C2 |
H21 |
C3 |
236.8 |
120.3 |
O1 |
C2 |
H21 |
H22 |
118.4 |
240.1 |
C3 |
C2 |
H21 |
H22 |
241.6 |
119.8 |
H21 |
C2 |
C3 |
N4 |
172.7 |
58.7 |
H21 |
C2 |
C3 |
H31 |
298.0 |
298.8 |
H21 |
C2 |
C3 |
H32 |
47.5 |
178.7 |
H22 |
C2 |
O1 |
C6 |
304.1 |
184.6 |
O1 |
C2 |
H22 |
C3 |
123.3 |
239.7 |
O1 |
C2 |
H22 |
H21 |
241.6 |
119.8 |
C3 |
C2 |
H22 |
H21 |
118.4 |
240.1 |
H22 |
C2 |
C3 |
N4 |
63.3 |
178.5 |
H22 |
C2 |
C3 |
H31 |
188.6 |
58.6 |
H22 |
C2 |
C3 |
H32 |
298.0 |
298.5 |
N4 |
C3 |
C2 |
H21 |
172.7 |
58.7 |
N4 |
C3 |
C2 |
H22 |
63.3 |
178.5 |
C2 |
C3 |
N4 |
H31 |
125.3 |
240.0 |
C2 |
C3 |
N4 |
H32 |
234.7 |
119.9 |
H31 |
C3 |
N4 |
H32 |
109.4 |
239.9 |
C5 |
N4 |
C3 |
C7 |
240.5 |
240.1 |
C5 |
N4 |
C3 |
HN4 |
119.5 |
119.9 |
C3 |
N4 |
C5 |
C6 |
302.5 |
303.4 |
C3 |
N4 |
C5 |
H51 |
67.7 |
63.3 |
C3 |
N4 |
C5 |
H52 |
177.2 |
183.4 |
C7 |
N4 |
C3 |
HN4 |
239.0 |
239.8 |
C3 |
N4 |
C7 |
C8 |
161.2 |
175.2 |
C3 |
N4 |
C7 |
H71 |
286.5 |
55.2 |
C3 |
N4 |
C7 |
H72 |
35.8 |
295.1 |
H31 |
C3 |
C2 |
H21 |
298.0 |
298.8 |
H31 |
C3 |
C2 |
H22 |
188.6 |
58.6 |
C2 |
C3 |
H31 |
N4 |
237.5 |
119.8 |
C2 |
C3 |
H31 |
H32 |
118.8 |
239.9 |
N4 |
C3 |
H31 |
H32 |
241.2 |
120.1 |
H31 |
C3 |
N4 |
C5 |
291.1 |
176.6 |
H31 |
C3 |
N4 |
C7 |
50.5 |
296.5 |
H31 |
C3 |
N4 |
HN4 |
171.5 |
56.7 |
H32 |
C3 |
C2 |
H21 |
47.5 |
178.7 |
H32 |
C3 |
C2 |
H22 |
298.0 |
298.5 |
C2 |
C3 |
H32 |
N4 |
122.5 |
240.2 |
C2 |
C3 |
H32 |
H31 |
241.3 |
120.1 |
N4 |
C3 |
H32 |
H31 |
118.8 |
239.9 |
H32 |
C3 |
N4 |
C5 |
181.6 |
296.7 |
H32 |
C3 |
N4 |
C7 |
301.1 |
56.6 |
H32 |
C3 |
N4 |
HN4 |
62.1 |
176.8 |
O1 |
C6 |
C5 |
N4 |
64.3 |
61.3 |
C5 |
N4 |
C3 |
H31 |
291.1 |
176.6 |
C5 |
N4 |
C3 |
H32 |
181.6 |
296.7 |
C3 |
N4 |
C5 |
C7 |
117.7 |
119.9 |
C3 |
N4 |
C5 |
HN4 |
238.8 |
240.1 |
C7 |
N4 |
C5 |
HN4 |
121.1 |
120.1 |
C5 |
N4 |
C7 |
C8 |
280.4 |
294.9 |
C5 |
N4 |
C7 |
H71 |
45.8 |
174.9 |
C5 |
N4 |
C7 |
H72 |
155.1 |
54.8 |
C6 |
C5 |
N4 |
H51 |
234.8 |
240.1 |
C6 |
C5 |
N4 |
H52 |
125.3 |
120.0 |
N4 |
C5 |
C6 |
H61 |
299.1 |
301.2 |
N4 |
C5 |
C6 |
H62 |
189.6 |
181.3 |
H51 |
C5 |
N4 |
H52 |
250.5 |
239.9 |
C7 |
N4 |
C3 |
H31 |
50.5 |
296.5 |
C7 |
N4 |
C3 |
H32 |
301.1 |
56.6 |
C3 |
N4 |
C7 |
C5 |
240.7 |
240.3 |
C3 |
N4 |
C7 |
HN4 |
121.1 |
120.2 |
C5 |
N4 |
C7 |
HN4 |
240.4 |
239.9 |
C7 |
N4 |
C5 |
C6 |
184.8 |
183.5 |
C7 |
N4 |
C5 |
H51 |
310.0 |
303.4 |
C7 |
N4 |
C5 |
H52 |
59.5 |
63.5 |
C8 |
C7 |
N4 |
H71 |
234.7 |
120.0 |
C8 |
C7 |
N4 |
H72 |
125.3 |
240.0 |
N4 |
C7 |
C8 |
S |
179.4 |
180.0 |
N4 |
C7 |
C8 |
H81 |
304.7 |
60.0 |
N4 |
C7 |
C8 |
H82 |
54.1 |
300.0 |
H71 |
C7 |
N4 |
H72 |
250.6 |
120.1 |
HN4 |
N4 |
C3 |
H31 |
171.5 |
56.7 |
HN4 |
N4 |
C3 |
H32 |
62.1 |
176.8 |
C3 |
N4 |
HN4 |
C5 |
120.4 |
119.7 |
C3 |
N4 |
HN4 |
C7 |
241.1 |
239.8 |
C5 |
N4 |
HN4 |
C7 |
120.6 |
120.1 |
HN4 |
N4 |
C5 |
C6 |
63.7 |
63.4 |
HN4 |
N4 |
C5 |
H51 |
188.9 |
183.3 |
HN4 |
N4 |
C5 |
H52 |
298.4 |
303.3 |
HN4 |
N4 |
C7 |
C8 |
40.0 |
55.0 |
HN4 |
N4 |
C7 |
H71 |
165.3 |
295.0 |
HN4 |
N4 |
C7 |
H72 |
274.7 |
174.9 |
O1 |
C6 |
C5 |
H61 |
125.2 |
120.1 |
O1 |
C6 |
C5 |
H62 |
234.8 |
239.9 |
C6 |
C5 |
N4 |
C7 |
184.8 |
183.5 |
C6 |
C5 |
N4 |
HN4 |
63.7 |
63.4 |
N4 |
C5 |
C6 |
H51 |
125.3 |
119.8 |
N4 |
C5 |
C6 |
H52 |
234.7 |
239.9 |
H51 |
C5 |
C6 |
H52 |
109.5 |
120.1 |
H61 |
C6 |
C5 |
H62 |
109.6 |
119.8 |
H51 |
C5 |
N4 |
C7 |
310.0 |
303.4 |
H51 |
C5 |
N4 |
HN4 |
188.9 |
183.3 |
N4 |
C5 |
H51 |
C6 |
238.3 |
240.2 |
N4 |
C5 |
H51 |
H52 |
119.2 |
120.1 |
C6 |
C5 |
H51 |
H52 |
240.8 |
239.9 |
H51 |
C5 |
C6 |
H61 |
173.9 |
181.3 |
H51 |
C5 |
C6 |
H62 |
64.3 |
61.5 |
H52 |
C5 |
N4 |
C7 |
59.5 |
63.5 |
H52 |
C5 |
N4 |
HN4 |
298.4 |
303.3 |
N4 |
C5 |
H52 |
C6 |
121.7 |
119.9 |
N4 |
C5 |
H52 |
H51 |
240.8 |
240.0 |
C6 |
C5 |
H52 |
H51 |
119.1 |
120.1 |
H52 |
C5 |
C6 |
H61 |
64.4 |
61.2 |
H52 |
C5 |
C6 |
H62 |
314.9 |
301.4 |
O1 |
C6 |
H61 |
C5 |
237.5 |
239.7 |
O1 |
C6 |
H61 |
H62 |
118.7 |
119.8 |
H61 |
C6 |
C5 |
H51 |
173.9 |
181.3 |
H61 |
C6 |
C5 |
H52 |
64.4 |
61.2 |
C5 |
C6 |
H61 |
H62 |
241.2 |
240.2 |
O1 |
C6 |
H62 |
C5 |
122.5 |
120.3 |
O1 |
C6 |
H62 |
H61 |
241.3 |
240.1 |
H62 |
C6 |
C5 |
H51 |
64.3 |
61.5 |
H62 |
C6 |
C5 |
H52 |
314.9 |
301.4 |
C5 |
C6 |
H62 |
H61 |
118.8 |
119.8 |
C8 |
C7 |
N4 |
HN4 |
40.0 |
55.0 |
N4 |
C7 |
C8 |
H71 |
125.3 |
240.0 |
N4 |
C7 |
C8 |
H72 |
234.7 |
120.0 |
H71 |
C7 |
C8 |
H72 |
109.4 |
240.0 |
S |
C8 |
C7 |
H81 |
234.7 |
120.0 |
S |
C8 |
C7 |
H82 |
125.3 |
239.9 |
C7 |
C8 |
S |
O1S |
296.7 |
60.0 |
C7 |
C8 |
S |
O2S |
179.5 |
300.0 |
C7 |
C8 |
S |
O3S |
57.4 |
180.0 |
H81 |
C8 |
C7 |
H82 |
250.6 |
119.9 |
H71 |
C7 |
N4 |
HN4 |
165.3 |
295.0 |
N4 |
C7 |
H71 |
C8 |
238.9 |
120.0 |
N4 |
C7 |
H71 |
H72 |
119.4 |
239.9 |
C8 |
C7 |
H71 |
H72 |
240.5 |
119.9 |
H71 |
C7 |
C8 |
S |
54.1 |
300.0 |
H71 |
C7 |
C8 |
H81 |
179.4 |
180.0 |
H71 |
C7 |
C8 |
H82 |
288.8 |
60.1 |
H72 |
C7 |
N4 |
HN4 |
274.7 |
174.9 |
N4 |
C7 |
H72 |
C8 |
121.1 |
240.0 |
N4 |
C7 |
H72 |
H71 |
240.6 |
120.1 |
C8 |
C7 |
H72 |
H71 |
119.5 |
240.1 |
H72 |
C7 |
C8 |
S |
304.7 |
60.0 |
H72 |
C7 |
C8 |
H81 |
69.9 |
300.0 |
H72 |
C7 |
C8 |
H82 |
179.4 |
180.0 |
S |
C8 |
C7 |
H71 |
54.1 |
300.0 |
S |
C8 |
C7 |
H72 |
304.7 |
60.0 |
C7 |
C8 |
S |
H81 |
125.2 |
240.0 |
C7 |
C8 |
S |
H82 |
234.8 |
120.0 |
H81 |
C8 |
S |
H82 |
109.5 |
240.0 |
O1S |
S |
C8 |
O2S |
117.2 |
120.0 |
O1S |
S |
C8 |
O3S |
239.3 |
240.0 |
O2S |
S |
C8 |
O3S |
122.1 |
120.0 |
H81 |
C8 |
C7 |
H71 |
179.4 |
180.0 |
H81 |
C8 |
C7 |
H72 |
69.9 |
300.0 |
C7 |
C8 |
H81 |
S |
235.0 |
120.0 |
C7 |
C8 |
H81 |
H82 |
117.5 |
240.1 |
S |
C8 |
H81 |
H82 |
242.4 |
120.0 |
H81 |
C8 |
S |
O1S |
171.5 |
180.0 |
H81 |
C8 |
S |
O2S |
54.3 |
60.0 |
H81 |
C8 |
S |
O3S |
292.1 |
300.0 |
H82 |
C8 |
C7 |
H71 |
288.8 |
60.1 |
H82 |
C8 |
C7 |
H72 |
179.4 |
180.0 |
C7 |
C8 |
H82 |
S |
125.0 |
239.9 |
C7 |
C8 |
H82 |
H81 |
242.5 |
119.9 |
S |
C8 |
H82 |
H81 |
117.6 |
240.0 |
H82 |
C8 |
S |
O1S |
62.0 |
300.0 |
H82 |
C8 |
S |
O2S |
304.8 |
180.0 |
H82 |
C8 |
S |
O3S |
182.6 |
60.0 |
O1S |
S |
C8 |
H81 |
171.5 |
180.0 |
O1S |
S |
C8 |
H82 |
62.0 |
300.0 |
C8 |
S |
O1S |
O2S |
249.0 |
240.2 |
C8 |
S |
O1S |
O3S |
117.4 |
119.8 |
O2S |
S |
O1S |
O3S |
228.4 |
239.6 |
O2S |
S |
C8 |
H81 |
54.3 |
60.0 |
O2S |
S |
C8 |
H82 |
304.8 |
180.0 |
C8 |
S |
O2S |
O1S |
113.6 |
119.8 |
C8 |
S |
O2S |
O3S |
243.5 |
240.2 |
O1S |
S |
O2S |
O3S |
130.0 |
120.4 |
O3S |
S |
C8 |
H81 |
292.1 |
300.0 |
O3S |
S |
C8 |
H82 |
182.6 |
60.0 |
C8 |
S |
O3S |
O1S |
243.1 |
240.2 |
C8 |
S |
O3S |
O2S |
113.6 |
119.8 |
O1S |
S |
O3S |
O2S |
230.4 |
239.6 |