PDB Chemical Component MER

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MER

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O6 1.203 1.208
C1 C3 1.504 1.507
C1 H1 1.080 1.081
C5 C2 1.328 1.346
C2 C18 1.495 1.512
C2 S14 1.688 1.761
C4 C3 1.552 1.530
C3 C7 1.550 1.530
C3 H3 1.100 1.089
N10 C4 1.463 1.469
C4 C18 1.553 1.539
C4 H4 1.100 1.089
C11 C5 1.478 1.415
N10 C5 1.260 1.404
O8 C7 1.422 1.429
C7 C9 1.519 1.530
C7 H7 1.100 1.090
O8 HO8 0.950 0.968
C9 H9 1.100 1.089
C9 H9A 1.100 1.090
C9 H9B 1.100 1.090
N10 HN10 1.000 0.970
O13 C11 1.250 1.217
C11 O12 1.271 1.350
O12 HO12 0.950 0.966
S14 C15 1.773 1.809
C16 C15 1.530 1.551
C15 C21 1.539 1.543
C15 H15 1.100 1.091
C16 C17 1.536 1.549
C16 H16 1.100 1.090
C16 H16A 1.100 1.090
C22 C17 1.510 1.507
C17 N19 1.453 1.479
C17 H17 1.100 1.090
C18 C20 1.532 1.531
C18 H18 1.100 1.090
N19 C21 1.456 1.475
N19 HN19 0.999 1.008
C20 H20 1.100 1.090
C20 H20A 1.099 1.090
C20 H20B 1.099 1.090
C21 H21 1.100 1.090
C21 H21A 1.100 1.091
N23 C22 1.353 1.348
O24 C22 1.226 1.213
C25 N23 1.458 1.465
N23 C26 1.463 1.465
C25 H25 1.100 1.090
C25 H25A 1.100 1.091
C25 H25B 1.100 1.090
C26 H26 1.100 1.089
C26 H26A 1.100 1.090
C26 H26B 1.100 1.090

Bond Angles for MER

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C3 C1 O6 117.8 120.0
O6 C1 H1 121.1 119.9
C3 C1 H1 121.1 120.0
C1 C3 C7 106.0 109.5
C1 C3 H3 104.7 109.4
C5 C2 C18 109.5 108.8
C5 C2 S14 127.0 125.6
S14 C2 C18 123.5 125.6
C2 C18 C4 104.3 104.6
C2 C18 C20 106.2 110.5
C2 C18 H18 109.3 110.4
C2 S14 C15 117.7 100.0
C4 C3 C7 123.4 109.5
C4 C3 H3 104.3 109.5
C7 C3 H3 104.3 109.5
C3 C7 C9 117.7 109.5
C3 C7 H7 104.6 109.5
N10 C4 C18 96.7 104.6
N10 C4 H4 113.9 110.5
C18 C4 H4 112.5 110.4
C4 C18 C20 119.2 110.7
C4 C18 H18 108.6 110.2
O8 C7 C9 110.1 109.4
O8 C7 H7 105.9 109.4
C9 C7 H7 104.9 109.5
C7 C9 H9 109.5 109.5
C7 C9 H9A 109.5 109.5
C7 C9 H9B 109.5 109.4
H9 C9 H9A 109.5 109.6
H9 C9 H9B 109.4 109.4
H9A C9 H9B 109.4 109.5
C11 O12 HO12 109.5 114.0
S14 C15 C21 113.2 110.7
S14 C15 H15 107.1 110.6
C16 C15 C21 105.4 103.0
C16 C15 H15 109.9 110.9
C21 C15 H15 109.7 110.7
C15 C21 N19 105.1 107.3
C15 C21 H21 110.6 109.9
C15 C21 H21A 110.6 109.9
C17 C16 H16 110.9 111.0
C17 C16 H16A 110.9 110.9
C16 C17 N19 104.2 104.8
C16 C17 H17 107.5 110.3
H16 C16 H16A 109.4 110.9
C22 C17 H17 107.7 110.4
N19 C17 H17 108.5 110.4
C17 N19 C21 112.2 108.5
C17 N19 HN19 108.8 111.0
C20 C18 H18 108.9 110.5
C18 C20 H20 109.5 109.5
C18 C20 H20A 109.4 109.5
C18 C20 H20B 109.5 109.4
C21 N19 HN19 108.8 111.0
N19 C21 H21 110.5 109.9
N19 C21 H21A 110.6 109.9
H20 C20 H20A 109.5 109.5
H20 C20 H20B 109.5 109.5
H20A C20 H20B 109.5 109.5
H21 C21 H21A 109.5 110.0
C25 N23 C26 112.9 120.0
N23 C26 H26 109.5 109.5
N23 C26 H26A 109.4 109.5
N23 C26 H26B 109.5 109.5
H25 C25 H25A 109.5 109.4
H25 C25 H25B 109.5 109.5
H25A C25 H25B 109.5 109.4
H26 C26 H26A 109.5 109.5
H26 C26 H26B 109.5 109.4
H26A C26 H26B 109.5 109.4

Torsion Angles for MER

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C1 O6 H1 180.0 179.7
O6 C1 C3 C7 267.0 248.2
O6 C1 C3 H3 16.9 8.2
O6 C1 C3 H1 180.0 180.3
C4 C3 C1 C7 222.4 240.0
C4 C3 C1 H3 112.6 120.0
C7 C3 C1 H3 250.1 240.0
C1 C3 C7 C9 203.1 60.0
C1 C3 C7 H7 87.3 300.0
C3 C1 H1 O6 180.0 180.3
H1 C1 C3 C7 86.9 67.9
H1 C1 C3 H3 196.8 187.8
S14 C2 C5 C18 178.6 180.2
C5 C2 C18 C4 4.9 360.0
C5 C2 C18 C20 131.6 119.0
C5 C2 C18 H18 248.9 241.5
C5 C2 S14 C15 108.7 117.6
C5 C2 C18 S14 178.6 180.2
C18 C2 S14 C15 287.1 297.8
N10 C4 C18 C2 349.2 0.1
C2 C18 C4 H4 229.9 241.1
C4 C18 C2 C20 233.3 240.9
C4 C18 C2 H18 116.0 118.5
C20 C18 C2 H18 242.7 237.5
C2 C18 C20 H20 180.0 75.5
C2 C18 C20 H20A 300.0 195.5
C2 C18 C20 H20B 60.0 315.5
C5 C2 S14 C18 181.6 179.7
S14 C2 C18 C4 186.2 179.7
S14 C2 C18 C20 313.0 298.8
S14 C2 C18 H18 70.3 61.3
C2 S14 C15 C21 87.8 293.5
C2 S14 C15 H15 208.9 56.6
C4 C3 C1 O6 129.4 128.2
C4 C3 C1 H1 309.4 307.9
C1 C3 C4 C7 129.0 120.0
C1 C3 C4 H3 247.2 240.0
C2 C18 C4 C3 96.5 118.8
C7 C3 C4 H3 118.2 120.0
C4 C3 C7 C9 334.7 180.0
C4 C3 C7 H7 218.9 60.0
C7 C3 C1 O6 267.0 248.2
C7 C3 C1 H1 86.9 67.9
C1 C3 C7 H3 110.2 119.9
C4 C3 C7 H3 241.8 240.0
O8 C7 C3 C9 129.7 120.0
O8 C7 C3 H7 245.5 240.1
C9 C7 C3 H7 115.8 120.1
C3 C7 C9 H9 180.0 59.9
C3 C7 C9 H9A 300.0 180.0
C3 C7 C9 H9B 60.0 300.0
H3 C3 C1 O6 16.9 8.2
H3 C3 C1 H1 196.8 187.8
C1 C3 H3 C7 248.8 240.0
C4 C3 H3 C7 130.6 120.0
H3 C3 C7 C9 92.8 300.1
H3 C3 C7 H7 337.0 180.0
C2 C18 C4 N10 349.2 0.1
N10 C4 C3 H3 82.5 168.2
C18 C4 N10 H4 241.7 241.1
N10 C4 C18 C20 231.0 241.1
N10 C4 C18 H18 105.7 118.7
C2 C18 C4 C20 118.2 118.9
C2 C18 C4 H18 243.5 241.4
C18 C4 C3 C7 96.4 173.1
C18 C4 C3 H3 338.2 53.0
N10 C4 C18 H4 119.4 118.9
C20 C18 C4 H18 125.3 122.5
C4 C18 C20 H20 297.2 190.8
C4 C18 C20 H20A 57.2 310.8
C4 C18 C20 H20B 177.2 70.8
H4 C4 C3 C7 323.1 50.7
H4 C4 C3 H3 204.9 290.7
N10 C4 H4 C18 251.2 244.7
H4 C4 C18 C20 111.7 122.2
H4 C4 C18 H18 346.4 359.7
C11 C5 C2 C18 187.1 180.0
C11 C5 C2 S14 5.7 0.2
N10 C5 C2 C18 4.8 360.0
N10 C5 C2 S14 183.3 180.2
C5 N10 C4 C18 15.9 359.9
C5 N10 C4 H4 134.1 118.8
O8 C7 C3 H3 222.5 60.1
C3 C7 O8 C9 226.5 240.0
C3 C7 O8 H7 113.7 120.0
C9 C7 O8 H7 247.2 240.0
O8 C7 C9 H9 49.1 299.9
O8 C7 C9 H9A 169.2 60.0
O8 C7 C9 H9B 289.1 180.0
C9 C7 C3 H3 92.8 300.1
C3 C7 C9 H7 244.3 240.0
O8 C7 C9 H7 113.5 120.0
H9 C9 C7 H9A 240.0 239.9
H9 C9 C7 H9B 120.0 119.9
H9A C9 C7 H9B 240.0 240.0
H7 C7 C3 H3 337.0 180.0
C3 C7 H7 C9 124.4 120.1
O8 C7 H7 C9 243.6 240.0
H7 C7 C9 H9 295.7 180.0
H7 C7 C9 H9A 55.7 300.1
H7 C7 C9 H9B 175.7 60.0
HO8 O8 C7 C9 313.5 60.0
HO8 O8 C7 H7 66.3 180.1
H9 C9 C7 H7 295.7 180.0
C7 C9 H9 H9A 120.0 120.0
C7 C9 H9 H9B 240.0 240.1
H9A C9 H9 H9B 119.9 120.0
H9A C9 C7 H7 55.7 300.1
C7 C9 H9A H9 240.0 240.0
C7 C9 H9A H9B 120.0 119.9
H9 C9 H9A H9B 240.1 240.0
H9B C9 C7 H7 175.7 60.0
C7 C9 H9B H9 120.0 120.0
C7 C9 H9B H9A 240.0 240.0
H9 C9 H9B H9A 119.9 120.1
HN10 N10 C4 C18 137.1 180.1
HN10 N10 C4 H4 255.4 298.9
O13 C11 O12 HO12 360.0 359.9
C15 S14 C2 C18 287.1 297.8
C16 C15 S14 C21 241.3 246.4
C16 C15 S14 H15 120.2 123.3
C21 C15 S14 H15 238.9 236.9
S14 C15 C21 N19 222.0 219.3
S14 C15 C21 H21 341.3 338.7
S14 C15 C21 H21A 102.7 99.9
S14 C15 C16 C21 123.2 118.4
S14 C15 C16 H15 241.4 236.9
C21 C15 C16 H15 118.2 118.4
C16 C15 C21 N19 344.2 337.7
C16 C15 C21 H21 103.4 97.2
C16 C15 C21 H21A 224.8 218.3
S14 C15 C21 H15 119.6 123.0
C16 C15 C21 H15 241.7 241.4
C17 N19 C21 C15 356.2 359.0
C15 C21 N19 HN19 235.8 236.8
N19 C21 C15 H21 240.7 240.6
N19 C21 C15 H21A 119.3 119.4
H21 C21 C15 H21A 238.6 238.8
S14 C15 H15 C21 236.8 236.9
C16 C15 H15 C21 115.5 113.7
H15 C15 C21 N19 102.4 96.3
H15 C15 C21 H21 221.7 215.7
H15 C15 C21 H21A 343.1 336.9
C17 C16 C15 C21 28.3 35.6
C17 C16 C15 H15 270.2 277.2
H16 C16 C17 H16A 121.8 123.7
C22 C17 C16 H17 118.5 122.4
N19 C17 C16 H17 245.0 241.2
C16 C17 N19 C21 21.7 24.1
C16 C17 N19 HN19 142.1 146.3
H16 C16 C15 C21 147.4 153.7
H16 C16 C15 H15 29.2 35.3
C17 C16 H16 H16A 237.3 236.2
H16 C16 C17 N19 210.6 204.8
H16 C16 C17 H17 325.6 323.6
H16A C16 C15 C21 269.2 277.6
H16A C16 C15 H15 151.1 159.1
C17 C16 H16A H16 122.7 123.8
H16A C16 C17 N19 88.8 81.1
H16A C16 C17 H17 203.8 199.9
C22 C17 C16 H16 84.1 86.0
C22 C17 C16 H16A 322.3 322.2
C16 C17 C22 H17 241.7 237.7
N19 C17 C22 H17 121.8 122.3
C22 C17 N19 HN19 266.4 265.2
C15 C21 N19 C17 356.2 359.0
N19 C17 C16 H16 210.6 204.8
N19 C17 C16 H16A 88.8 81.1
C16 C17 N19 H17 114.3 118.8
C22 C17 N19 H17 238.6 237.6
C21 N19 C17 HN19 239.6 237.7
C17 N19 C21 H21 236.9 239.6
C17 N19 C21 H21A 115.5 118.4
H17 C17 C16 H16 325.6 323.6
H17 C17 C16 H16A 203.8 199.9
C16 C17 H17 N19 247.9 244.7
H17 C17 N19 C21 267.4 265.3
H17 C17 N19 HN19 27.8 27.6
C2 C18 C20 C4 242.8 244.7
C2 C18 C20 H18 117.6 122.4
C20 C18 C4 H4 111.7 122.2
C4 C18 C20 H18 234.9 237.7
H20 C20 C18 H20A 240.0 240.0
H20 C20 C18 H20B 120.0 120.0
H20A C20 C18 H20B 240.0 240.0
C2 C18 H18 C4 113.2 115.0
C2 C18 H18 C20 244.4 237.5
H18 C18 C4 H4 346.4 359.7
C4 C18 H18 C20 131.1 122.6
H18 C18 C20 H20 62.3 313.1
H18 C18 C20 H20A 182.3 73.1
H18 C18 C20 H20B 302.4 193.1
N19 C21 C15 H15 102.4 96.3
C15 C21 N19 H21 119.3 119.4
C15 C21 N19 H21A 240.7 240.6
C21 N19 C17 H17 267.4 265.3
C17 N19 C21 HN19 120.4 122.2
H21 C21 N19 H21A 121.4 121.2
HN19 N19 C17 H17 27.8 27.6
C17 N19 HN19 C21 237.5 239.2
HN19 N19 C21 H21 116.5 117.4
HN19 N19 C21 H21A 355.1 356.2
H20 C20 C18 H18 62.3 313.1
C18 C20 H20 H20A 120.0 120.0
C18 C20 H20 H20B 240.0 240.0
H20A C20 H20 H20B 120.0 120.1
H20A C20 C18 H18 182.3 73.1
C18 C20 H20A H20 240.0 240.0
C18 C20 H20A H20B 120.0 120.0
H20 C20 H20A H20B 240.0 240.0
H20B C20 C18 H18 302.4 193.1
C18 C20 H20B H20 120.0 120.0
C18 C20 H20B H20A 240.0 240.0
H20 C20 H20B H20A 120.0 120.0
H21 C21 C15 H15 221.7 215.7
C15 C21 H21 N19 244.1 242.2
C15 C21 H21 H21A 122.0 121.1
H21 C21 N19 HN19 116.5 117.4
N19 C21 H21 H21A 238.0 238.9
H21A C21 C15 H15 343.1 336.9
C15 C21 H21A N19 115.9 117.8
C15 C21 H21A H21 237.9 238.9
H21A C21 N19 HN19 355.1 356.2
N19 C21 H21A H21 122.0 121.1
N23 C22 C17 H17 0.1 42.3
O24 C22 C17 H17 179.4 222.3
C25 N23 C26 H26 359.8 270.0
C25 N23 C26 H26A 119.8 30.0
C25 N23 C26 H26B 239.8 150.0
H26 C26 N23 H26A 240.0 240.0
H26 C26 N23 H26B 120.0 120.0
H26A C26 N23 H26B 240.0 240.0
H25 C25 N23 C26 0.2 270.0
H25A C25 H25 H25B 120.0 120.0
H25A C25 N23 C26 120.2 30.0
H25 C25 H25A H25B 240.0 240.0
H25B C25 N23 C26 240.2 150.0
H25 C25 H25B H25A 120.0 120.0
N23 C26 H26 H26A 120.0 120.1
N23 C26 H26 H26B 240.0 240.0
H26A C26 H26 H26B 120.0 119.9
N23 C26 H26A H26 240.0 239.9
N23 C26 H26A H26B 120.0 120.0
H26 C26 H26A H26B 240.0 240.1
N23 C26 H26B H26 120.0 120.0
N23 C26 H26B H26A 240.0 240.0
H26 C26 H26B H26A 120.0 119.9