PDB Chemical Component MEN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MEN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.455 |
1.470 |
| N |
H |
0.980 |
1.008 |
| N |
H2 |
1.019 |
1.008 |
| CA |
C |
1.530 |
1.507 |
| CA |
CB |
1.520 |
1.528 |
| CA |
HA |
1.115 |
1.090 |
| C |
O |
1.233 |
1.207 |
| C |
OXT |
1.332 |
1.342 |
| CB |
CG |
1.526 |
1.506 |
| CB |
HB2 |
1.115 |
1.090 |
| CB |
HB3 |
1.115 |
1.090 |
| CG |
OD1 |
1.226 |
1.212 |
| CG |
ND2 |
1.327 |
1.348 |
| ND2 |
CE2 |
1.464 |
1.465 |
| ND2 |
HD2 |
1.020 |
0.970 |
| CE2 |
HE21 |
1.115 |
1.090 |
| CE2 |
HE22 |
1.116 |
1.089 |
| CE2 |
HE23 |
1.115 |
1.089 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for MEN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
120.4 |
106.7 |
| CA |
N |
H2 |
109.8 |
106.6 |
| N |
CA |
C |
116.2 |
109.4 |
| N |
CA |
CB |
111.5 |
109.5 |
| N |
CA |
HA |
103.8 |
109.4 |
| H |
N |
H2 |
52.3 |
106.7 |
| C |
CA |
CB |
111.5 |
109.5 |
| C |
CA |
HA |
103.7 |
109.5 |
| CA |
C |
O |
120.4 |
120.1 |
| CA |
C |
OXT |
117.4 |
119.9 |
| CB |
CA |
HA |
109.3 |
109.5 |
| CA |
CB |
CG |
112.1 |
109.5 |
| CA |
CB |
HB2 |
111.3 |
109.4 |
| CA |
CB |
HB3 |
111.3 |
109.4 |
| O |
C |
OXT |
122.2 |
120.0 |
| C |
OXT |
HXT |
117.3 |
120.0 |
| CG |
CB |
HB2 |
111.2 |
109.5 |
| CG |
CB |
HB3 |
111.2 |
109.4 |
| CB |
CG |
OD1 |
121.2 |
120.0 |
| CB |
CG |
ND2 |
116.6 |
120.0 |
| HB2 |
CB |
HB3 |
99.2 |
109.5 |
| OD1 |
CG |
ND2 |
122.2 |
120.0 |
| CG |
ND2 |
CE2 |
120.1 |
120.0 |
| CG |
ND2 |
HD2 |
115.1 |
120.0 |
| CE2 |
ND2 |
HD2 |
124.8 |
120.0 |
| ND2 |
CE2 |
HE21 |
120.1 |
109.4 |
| ND2 |
CE2 |
HE22 |
108.4 |
109.5 |
| ND2 |
CE2 |
HE23 |
108.4 |
109.5 |
| HE21 |
CE2 |
HE22 |
108.3 |
109.4 |
| HE21 |
CE2 |
HE23 |
108.4 |
109.5 |
| HE22 |
CE2 |
HE23 |
101.5 |
109.5 |
Torsion Angles for MEN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
57.1 |
113.7 |
| C |
CA |
N |
CB |
129.3 |
120.1 |
| C |
CA |
N |
HA |
246.9 |
240.0 |
| N |
CA |
C |
O |
171.6 |
329.9 |
| N |
CA |
C |
OXT |
352.3 |
150.0 |
| CB |
CA |
N |
HA |
117.5 |
120.0 |
| N |
CA |
CB |
CG |
213.4 |
300.1 |
| N |
CA |
CB |
HB2 |
338.6 |
180.0 |
| N |
CA |
CB |
HB3 |
88.1 |
60.0 |
| CA |
N |
H |
H2 |
267.6 |
246.3 |
| H |
N |
CA |
C |
111.8 |
173.8 |
| H |
N |
CA |
CB |
342.5 |
53.7 |
| H |
N |
CA |
HA |
225.0 |
293.7 |
| CA |
N |
H2 |
H |
113.7 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
60.0 |
| H2 |
N |
CA |
CB |
285.4 |
300.0 |
| H2 |
N |
CA |
HA |
167.9 |
180.0 |
| C |
CA |
N |
H |
111.8 |
173.8 |
| C |
CA |
N |
H2 |
54.7 |
60.0 |
| N |
CA |
C |
CB |
230.7 |
240.0 |
| N |
CA |
C |
HA |
113.2 |
119.9 |
| CB |
CA |
C |
HA |
242.5 |
239.9 |
| C |
CA |
CB |
CG |
81.6 |
180.1 |
| C |
CA |
CB |
HB2 |
206.8 |
60.0 |
| C |
CA |
CB |
HB3 |
316.4 |
300.0 |
| O |
C |
CA |
OXT |
179.3 |
179.9 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
342.5 |
53.7 |
| CB |
CA |
N |
H2 |
285.4 |
300.0 |
| N |
CA |
CB |
C |
131.8 |
120.0 |
| N |
CA |
CB |
HA |
245.8 |
240.1 |
| C |
CA |
CB |
HA |
114.1 |
120.1 |
| CB |
CA |
C |
O |
301.0 |
89.9 |
| CB |
CA |
C |
OXT |
121.7 |
270.0 |
| CG |
CB |
CA |
HB2 |
234.8 |
120.1 |
| CG |
CB |
CA |
HB3 |
125.2 |
240.0 |
| CA |
CB |
CG |
OD1 |
244.0 |
359.9 |
| CA |
CB |
CG |
ND2 |
63.5 |
180.1 |
| HB2 |
CB |
CA |
HB3 |
250.4 |
120.0 |
| HA |
CA |
N |
H |
225.0 |
293.7 |
| HA |
CA |
N |
H2 |
167.9 |
180.0 |
| N |
CA |
HA |
C |
238.2 |
240.1 |
| N |
CA |
HA |
CB |
119.1 |
120.0 |
| C |
CA |
HA |
CB |
240.9 |
239.9 |
| HA |
CA |
C |
O |
58.5 |
210.0 |
| HA |
CA |
C |
OXT |
239.2 |
30.1 |
| HA |
CA |
CB |
CG |
327.5 |
60.0 |
| HA |
CA |
CB |
HB2 |
92.7 |
299.9 |
| HA |
CA |
CB |
HB3 |
202.3 |
180.0 |
| O |
C |
CA |
CB |
301.0 |
89.9 |
| O |
C |
CA |
HA |
58.5 |
210.0 |
| CA |
C |
O |
OXT |
180.7 |
180.1 |
| O |
C |
OXT |
HXT |
0.7 |
0.0 |
| OXT |
C |
CA |
CB |
121.7 |
270.0 |
| OXT |
C |
CA |
HA |
239.2 |
30.1 |
| CA |
C |
OXT |
O |
179.3 |
179.9 |
| CG |
CB |
CA |
HA |
327.5 |
60.0 |
| CA |
CB |
CG |
HB2 |
125.3 |
240.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
119.9 |
| HB2 |
CB |
CG |
HB3 |
109.5 |
240.0 |
| OD1 |
CG |
CB |
ND2 |
180.5 |
179.9 |
| CB |
CG |
ND2 |
CE2 |
195.5 |
180.0 |
| CB |
CG |
ND2 |
HD2 |
15.5 |
359.9 |
| HB2 |
CB |
CA |
HA |
92.7 |
299.9 |
| CA |
CB |
HB2 |
CG |
234.3 |
120.0 |
| CA |
CB |
HB2 |
HB3 |
117.2 |
240.1 |
| CG |
CB |
HB2 |
HB3 |
242.9 |
120.0 |
| HB2 |
CB |
CG |
OD1 |
118.8 |
119.9 |
| HB2 |
CB |
CG |
ND2 |
298.3 |
300.1 |
| HB3 |
CB |
CA |
HA |
202.3 |
180.0 |
| CA |
CB |
HB3 |
CG |
125.7 |
240.0 |
| CA |
CB |
HB3 |
HB2 |
242.8 |
119.9 |
| CG |
CB |
HB3 |
HB2 |
117.1 |
239.9 |
| HB3 |
CB |
CG |
OD1 |
9.3 |
240.0 |
| HB3 |
CB |
CG |
ND2 |
188.8 |
60.1 |
| OD1 |
CG |
CB |
HB2 |
118.8 |
119.9 |
| OD1 |
CG |
CB |
HB3 |
9.3 |
240.0 |
| CB |
CG |
OD1 |
ND2 |
179.5 |
180.1 |
| OD1 |
CG |
ND2 |
CE2 |
15.0 |
0.1 |
| OD1 |
CG |
ND2 |
HD2 |
195.0 |
180.0 |
| ND2 |
CG |
CB |
HB2 |
298.3 |
300.1 |
| ND2 |
CG |
CB |
HB3 |
188.8 |
60.1 |
| CB |
CG |
ND2 |
OD1 |
180.5 |
179.9 |
| CE2 |
ND2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
ND2 |
CE2 |
HE21 |
180.0 |
180.0 |
| CG |
ND2 |
CE2 |
HE22 |
305.3 |
299.9 |
| CG |
ND2 |
CE2 |
HE23 |
54.7 |
60.0 |
| CG |
ND2 |
CE2 |
HD2 |
180.0 |
179.9 |
| HE21 |
CE2 |
ND2 |
HE22 |
234.7 |
240.1 |
| HE21 |
CE2 |
ND2 |
HE23 |
125.3 |
120.0 |
| HE22 |
CE2 |
ND2 |
HE23 |
250.5 |
239.9 |
| CG |
ND2 |
HD2 |
CE2 |
180.0 |
180.1 |
| HD2 |
ND2 |
CE2 |
HE21 |
0.0 |
0.1 |
| HD2 |
ND2 |
CE2 |
HE22 |
125.3 |
120.0 |
| HD2 |
ND2 |
CE2 |
HE23 |
234.7 |
240.1 |
| HE21 |
CE2 |
ND2 |
HD2 |
0.0 |
0.1 |
| ND2 |
CE2 |
HE21 |
HE22 |
125.3 |
120.0 |
| ND2 |
CE2 |
HE21 |
HE23 |
234.7 |
240.0 |
| HE22 |
CE2 |
HE21 |
HE23 |
109.4 |
120.0 |
| HE22 |
CE2 |
ND2 |
HD2 |
125.3 |
120.0 |
| ND2 |
CE2 |
HE22 |
HE21 |
228.1 |
240.1 |
| ND2 |
CE2 |
HE22 |
HE23 |
114.1 |
120.0 |
| HE21 |
CE2 |
HE22 |
HE23 |
246.0 |
240.0 |
| HE23 |
CE2 |
ND2 |
HD2 |
234.7 |
240.1 |
| ND2 |
CE2 |
HE23 |
HE21 |
131.9 |
120.0 |
| ND2 |
CE2 |
HE23 |
HE22 |
245.9 |
239.9 |
| HE21 |
CE2 |
HE23 |
HE22 |
114.0 |
120.0 |