PDB Chemical Component ME8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ME8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.392 |
1.320 |
| O1 |
P1 |
1.642 |
1.610 |
| O1 |
C9 |
1.362 |
1.343 |
| P1 |
O5' |
1.628 |
1.611 |
| C2 |
H2 |
1.080 |
1.080 |
| N2 |
CA |
1.488 |
1.469 |
| N2 |
HN2 |
1.000 |
1.009 |
| N2 |
HN2A |
1.000 |
1.009 |
| N3 |
C2 |
1.390 |
1.316 |
| C4 |
N3 |
1.445 |
1.329 |
| C5 |
C4 |
1.462 |
1.405 |
| C5 |
C6 |
1.389 |
1.405 |
| C6 |
N1 |
1.390 |
1.329 |
| N6 |
C6 |
1.313 |
1.383 |
| N6 |
HN6 |
1.000 |
0.970 |
| N6 |
HN6A |
1.000 |
0.971 |
| N7 |
C5 |
1.334 |
1.355 |
| C8 |
N7 |
1.350 |
1.302 |
| C8 |
N9 |
1.337 |
1.363 |
| C9 |
O |
1.228 |
1.209 |
| N9 |
C4 |
1.429 |
1.373 |
| N9 |
C1' |
1.466 |
1.465 |
| CA |
C9 |
1.516 |
1.507 |
| CA |
CB |
1.520 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| CE |
SD |
1.778 |
1.814 |
| CE |
HE |
1.100 |
1.090 |
| CE |
HEA |
1.100 |
1.090 |
| CE |
HEB |
1.100 |
1.090 |
| CG |
CB |
1.518 |
1.531 |
| CG |
SD |
1.827 |
1.814 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| C1' |
C2' |
1.517 |
1.549 |
| C1' |
H1' |
1.100 |
1.090 |
| O1S |
P1 |
1.465 |
1.480 |
| C2' |
O2' |
1.427 |
1.428 |
| C2' |
H2' |
1.099 |
1.089 |
| O2' |
HO2' |
0.950 |
0.967 |
| O2S |
P1 |
1.490 |
1.610 |
| O2S |
HO2S |
0.950 |
0.967 |
| C3' |
C2' |
1.525 |
1.549 |
| C3' |
O3' |
1.402 |
1.429 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.949 |
0.967 |
| C4' |
C3' |
1.537 |
1.541 |
| C4' |
O4' |
1.448 |
1.438 |
| C4' |
H4' |
1.100 |
1.090 |
| O4' |
C1' |
1.447 |
1.444 |
| C5' |
C4' |
1.547 |
1.530 |
| C5' |
H5' |
1.100 |
1.089 |
| C5' |
H5'A |
1.100 |
1.090 |
| O5' |
C5' |
1.435 |
1.429 |
| C8 |
H8 |
1.080 |
1.080 |
Bond Angles for ME8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C2 |
H2 |
120.3 |
118.8 |
| P1 |
O1 |
C9 |
121.3 |
117.0 |
| O1 |
P1 |
O5' |
102.3 |
109.4 |
| O1S |
P1 |
O5' |
108.5 |
109.5 |
| O2S |
P1 |
O5' |
108.9 |
109.5 |
| P1 |
O5' |
C5' |
118.5 |
123.0 |
| N3 |
C2 |
H2 |
120.3 |
118.8 |
| CA |
N2 |
HN2 |
109.5 |
111.0 |
| CA |
N2 |
HN2A |
109.5 |
111.0 |
| N2 |
CA |
C9 |
106.7 |
109.5 |
| N2 |
CA |
CB |
110.7 |
109.5 |
| N2 |
CA |
HA |
109.7 |
109.5 |
| HN2 |
N2 |
HN2A |
109.5 |
111.0 |
| HN6 |
N6 |
HN6A |
109.5 |
120.0 |
| C8 |
N9 |
C1' |
130.2 |
126.3 |
| N9 |
C8 |
H8 |
124.3 |
125.1 |
| N9 |
C1' |
C2' |
109.1 |
110.6 |
| N9 |
C1' |
H1' |
110.2 |
110.6 |
| CB |
CA |
HA |
109.3 |
109.5 |
| CA |
CB |
HB |
108.1 |
109.5 |
| CA |
CB |
HBA |
108.1 |
109.5 |
| HB |
CB |
HBA |
110.8 |
109.5 |
| CG |
CB |
HB |
108.1 |
109.4 |
| CG |
CB |
HBA |
108.1 |
109.4 |
| HE |
CE |
HEA |
109.5 |
109.5 |
| HE |
CE |
HEB |
109.4 |
109.4 |
| HEA |
CE |
HEB |
109.5 |
109.5 |
| HG |
CG |
HGA |
109.7 |
109.5 |
| C2' |
C1' |
H1' |
111.2 |
110.7 |
| C1' |
C2' |
O2' |
106.9 |
110.9 |
| C1' |
C2' |
H2' |
117.9 |
110.9 |
| O4' |
C1' |
H1' |
113.3 |
110.7 |
| O2' |
C2' |
H2' |
107.2 |
110.8 |
| C2' |
O2' |
HO2' |
109.5 |
114.0 |
| C3' |
C2' |
H2' |
114.1 |
110.9 |
| O3' |
C3' |
H3' |
107.0 |
110.4 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C4' |
C3' |
H3' |
116.6 |
110.6 |
| O4' |
C4' |
H4' |
114.1 |
109.9 |
| C5' |
C4' |
H4' |
105.5 |
110.0 |
| H5' |
C5' |
H5'A |
109.7 |
109.5 |
| O5' |
C5' |
H5' |
109.2 |
109.5 |
| O5' |
C5' |
H5'A |
109.2 |
109.4 |
Torsion Angles for ME8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
| O1S |
P1 |
O1 |
O5' |
112.5 |
120.0 |
| O2S |
P1 |
O1 |
O5' |
242.6 |
240.0 |
| O1 |
P1 |
O5' |
C5' |
271.4 |
175.0 |
| C9 |
O1 |
P1 |
O5' |
86.2 |
185.0 |
| N2 |
CA |
C9 |
O1 |
341.7 |
160.0 |
| O5' |
P1 |
O1 |
C9 |
86.2 |
185.0 |
| P1 |
O5' |
C5' |
H5' |
46.2 |
60.0 |
| P1 |
O5' |
C5' |
H5'A |
286.2 |
299.9 |
| HN2 |
N2 |
CA |
HN2A |
240.0 |
236.0 |
| CB |
CA |
N2 |
HA |
120.7 |
120.0 |
| N2 |
CA |
CB |
HB |
54.5 |
55.0 |
| N2 |
CA |
CB |
HBA |
174.5 |
175.0 |
| CA |
N2 |
HN2 |
HN2A |
120.0 |
124.0 |
| HN2 |
N2 |
CA |
C9 |
180.0 |
60.0 |
| HN2 |
N2 |
CA |
CB |
63.7 |
300.0 |
| HN2 |
N2 |
CA |
HA |
303.0 |
179.9 |
| CA |
N2 |
HN2A |
HN2 |
240.0 |
236.0 |
| HN2A |
N2 |
CA |
C9 |
300.0 |
184.0 |
| HN2A |
N2 |
CA |
CB |
183.7 |
64.0 |
| HN2A |
N2 |
CA |
HA |
63.0 |
303.9 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
| C4 |
N3 |
C2 |
H2 |
195.5 |
180.0 |
| C6 |
N1 |
C2 |
H2 |
177.0 |
180.0 |
| C8 |
N9 |
C1' |
C2' |
235.7 |
264.9 |
| C8 |
N9 |
C1' |
H1' |
113.3 |
142.0 |
| C1' |
N9 |
C8 |
H8 |
8.2 |
0.1 |
| C2' |
C1' |
N9 |
H1' |
122.4 |
122.9 |
| N9 |
C1' |
C2' |
O2' |
192.0 |
273.7 |
| N9 |
C1' |
C2' |
H2' |
312.7 |
37.3 |
| O4' |
C1' |
N9 |
H1' |
236.5 |
237.0 |
| C9 |
CA |
N2 |
HN2 |
180.0 |
60.0 |
| C9 |
CA |
N2 |
HN2A |
300.0 |
184.0 |
| N2 |
CA |
C9 |
CB |
241.3 |
240.0 |
| N2 |
CA |
C9 |
HA |
120.8 |
120.0 |
| CB |
CA |
N2 |
HN2 |
63.7 |
300.0 |
| CB |
CA |
N2 |
HN2A |
183.7 |
64.0 |
| N2 |
CA |
CB |
C9 |
116.0 |
120.0 |
| N2 |
CA |
CB |
HA |
239.0 |
240.0 |
| HB |
CB |
CA |
HBA |
240.0 |
240.0 |
| CG |
CB |
CA |
HB |
240.0 |
240.0 |
| CG |
CB |
CA |
HBA |
120.0 |
120.0 |
| HA |
CA |
N2 |
HN2 |
303.0 |
179.9 |
| HA |
CA |
N2 |
HN2A |
63.0 |
303.9 |
| N2 |
CA |
HA |
C9 |
240.9 |
240.0 |
| N2 |
CA |
HA |
CB |
121.6 |
120.0 |
| HA |
CA |
CB |
HB |
175.5 |
175.0 |
| HA |
CA |
CB |
HBA |
295.5 |
295.1 |
| HB |
CB |
CA |
HA |
175.5 |
175.0 |
| CA |
CB |
HB |
HBA |
118.2 |
120.1 |
| CG |
CB |
HB |
HBA |
241.7 |
240.0 |
| HBA |
CB |
CA |
HA |
295.5 |
295.1 |
| CA |
CB |
HBA |
HB |
241.8 |
239.9 |
| CG |
CB |
HBA |
HB |
118.3 |
120.0 |
| HEA |
CE |
HE |
HEB |
120.0 |
120.0 |
| HE |
CE |
HEA |
HEB |
240.0 |
240.1 |
| HE |
CE |
HEB |
HEA |
120.0 |
120.0 |
| CG |
CB |
CA |
HA |
55.5 |
55.0 |
| CA |
CB |
CG |
HB |
120.0 |
120.0 |
| CA |
CB |
CG |
HBA |
240.0 |
240.0 |
| HB |
CB |
CG |
HBA |
120.0 |
120.0 |
| SD |
CG |
CB |
HB |
56.0 |
60.0 |
| SD |
CG |
CB |
HBA |
296.0 |
300.0 |
| HG |
CG |
CB |
HB |
176.0 |
180.0 |
| HG |
CG |
CB |
HBA |
56.0 |
60.0 |
| HGA |
CG |
CB |
HB |
296.0 |
300.0 |
| HGA |
CG |
CB |
HBA |
176.0 |
180.0 |
| N9 |
C1' |
C2' |
H1' |
238.2 |
237.1 |
| O4' |
C1' |
C2' |
H1' |
123.4 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
239.2 |
236.4 |
| C1' |
C2' |
O2' |
HO2' |
180.0 |
180.0 |
| C3' |
C2' |
C1' |
H2' |
123.7 |
118.2 |
| N9 |
C1' |
H1' |
C2' |
121.1 |
122.9 |
| H1' |
C1' |
C2' |
O2' |
313.8 |
36.6 |
| H1' |
C1' |
C2' |
H2' |
74.5 |
160.2 |
| O1 |
P1 |
O1S |
O5' |
252.3 |
240.0 |
| O2S |
P1 |
O1S |
O5' |
125.3 |
120.0 |
| O1S |
P1 |
O5' |
C5' |
163.5 |
55.0 |
| O2' |
C2' |
C1' |
H1' |
313.8 |
36.6 |
| C1' |
C2' |
O2' |
H2' |
127.4 |
123.7 |
| C3' |
C2' |
O2' |
H2' |
234.6 |
236.3 |
| H2' |
C2' |
C1' |
H1' |
74.5 |
160.2 |
| C1' |
C2' |
H2' |
O2' |
239.4 |
236.4 |
| H2' |
C2' |
O2' |
HO2' |
52.6 |
56.4 |
| HO2' |
O2' |
C2' |
H2' |
52.6 |
56.4 |
| O1 |
P1 |
O2S |
O5' |
113.5 |
120.0 |
| O1S |
P1 |
O2S |
O5' |
234.8 |
240.0 |
| O2S |
P1 |
O5' |
C5' |
32.4 |
295.0 |
| HO2S |
O2S |
P1 |
O5' |
125.2 |
300.0 |
| C3' |
C2' |
C1' |
H1' |
198.2 |
278.4 |
| C1' |
C2' |
C3' |
H2' |
233.7 |
241.8 |
| O2' |
C2' |
C3' |
H2' |
121.4 |
123.6 |
| C3' |
C2' |
O2' |
HO2' |
287.2 |
292.7 |
| O3' |
C3' |
C2' |
H2' |
285.6 |
216.0 |
| C4' |
C3' |
O3' |
H3' |
233.8 |
237.3 |
| H3' |
C3' |
C2' |
H2' |
46.4 |
338.5 |
| H3' |
C3' |
O3' |
HO3' |
55.2 |
298.8 |
| HO3' |
O3' |
C3' |
H3' |
55.2 |
298.8 |
| C4' |
C3' |
C2' |
H2' |
171.7 |
97.3 |
| O3' |
C3' |
C4' |
H3' |
120.4 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
288.9 |
176.2 |
| C4' |
O4' |
C1' |
H1' |
137.5 |
78.5 |
| O4' |
C4' |
C3' |
H3' |
85.7 |
116.7 |
| C5' |
C4' |
O4' |
H4' |
242.1 |
238.8 |
| H4' |
C4' |
C3' |
H3' |
208.7 |
236.1 |
| N9 |
C1' |
O4' |
H1' |
121.6 |
122.9 |
| C2' |
C1' |
O4' |
H1' |
237.9 |
241.4 |
| O4' |
C1' |
C2' |
H2' |
198.0 |
278.8 |
| P1 |
O5' |
C5' |
C4' |
166.2 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
326.7 |
357.3 |
| O4' |
C4' |
C5' |
H4' |
123.2 |
121.2 |
| H5' |
C5' |
C4' |
H4' |
48.9 |
66.0 |
| O5' |
C5' |
H5' |
H5'A |
240.3 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
168.9 |
186.1 |
| O5' |
C5' |
H5'A |
H5' |
119.7 |
120.0 |
| O5' |
C5' |
C4' |
H4' |
288.9 |
306.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H8 |
C8 |
N9 |
C1' |
8.2 |
0.1 |