PDB Chemical Component ME6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ME6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.251 |
1.219 |
| C2 |
N1 |
1.431 |
1.346 |
| C2 |
N3 |
1.336 |
1.333 |
| N3 |
C4 |
1.346 |
1.327 |
| C20 |
N3 |
1.471 |
1.464 |
| C20 |
H20 |
1.100 |
1.090 |
| C20 |
H20A |
1.100 |
1.090 |
| C20 |
H20B |
1.100 |
1.091 |
| C4 |
N4 |
1.360 |
1.375 |
| C4 |
C5 |
1.394 |
1.411 |
| N4 |
HN4 |
1.000 |
0.970 |
| C5 |
H5 |
1.080 |
1.079 |
| C6 |
C5 |
1.388 |
1.354 |
| C6 |
H6 |
1.080 |
1.080 |
| N1 |
C6 |
1.350 |
1.363 |
| C1' |
N1 |
1.488 |
1.465 |
| C1' |
H1' |
1.100 |
1.090 |
| O4' |
C1' |
1.439 |
1.445 |
| C2' |
C1' |
1.525 |
1.545 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.100 |
1.090 |
| C3' |
C2' |
1.507 |
1.544 |
| C3' |
O3' |
1.416 |
1.429 |
| C3' |
H3' |
1.100 |
1.091 |
| O3' |
HO3' |
0.951 |
0.967 |
| C4' |
O4' |
1.434 |
1.444 |
| C4' |
C3' |
1.504 |
1.547 |
| C4' |
H4' |
1.100 |
1.090 |
| C5' |
C4' |
1.503 |
1.530 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| O5' |
C5' |
1.399 |
1.429 |
| P |
O5' |
1.586 |
1.610 |
| P |
O3P |
1.515 |
1.610 |
| P |
O1P |
1.830 |
1.480 |
| O3P |
HO3P |
0.950 |
0.967 |
| O2P |
P |
1.517 |
1.610 |
| O2P |
HO2P |
0.950 |
0.968 |
| N4 |
H17 |
1.000 |
0.970 |
Bond Angles for ME6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C2 |
N1 |
122.9 |
119.5 |
| O2 |
C2 |
N3 |
116.5 |
119.5 |
| N3 |
C2 |
N1 |
120.6 |
121.1 |
| C2 |
N1 |
C6 |
118.5 |
120.4 |
| C2 |
N3 |
C4 |
120.9 |
120.7 |
| C20 |
N3 |
C4 |
120.6 |
119.6 |
| N3 |
C4 |
N4 |
120.6 |
120.2 |
| N3 |
C4 |
C5 |
120.2 |
119.6 |
| H20 |
C20 |
H20A |
109.5 |
109.5 |
| H20 |
C20 |
H20B |
109.5 |
109.4 |
| H20A |
C20 |
H20B |
109.5 |
109.4 |
| N4 |
C4 |
C5 |
119.2 |
120.2 |
| C4 |
N4 |
HN4 |
110.1 |
120.0 |
| C4 |
N4 |
H17 |
125.0 |
120.1 |
| C4 |
C5 |
H5 |
120.3 |
120.5 |
| HN4 |
N4 |
H17 |
124.9 |
120.0 |
| C6 |
C5 |
H5 |
120.2 |
120.6 |
| N1 |
C6 |
H6 |
119.8 |
120.4 |
| O4' |
C1' |
H1' |
104.8 |
110.4 |
| C2' |
C1' |
H1' |
114.3 |
110.4 |
| H2' |
C2' |
H2'A |
100.0 |
110.4 |
| C3' |
C2' |
H2' |
114.0 |
110.5 |
| C3' |
C2' |
H2'A |
116.6 |
110.7 |
| O3' |
C3' |
H3' |
109.2 |
110.4 |
| C3' |
O3' |
HO3' |
109.5 |
114.0 |
| C4' |
C3' |
H3' |
114.9 |
110.6 |
| C5' |
C4' |
H4' |
116.4 |
110.4 |
| H5' |
C5' |
H5'A |
102.6 |
109.5 |
| O5' |
C5' |
H5' |
112.7 |
109.4 |
| O5' |
C5' |
H5'A |
114.6 |
109.5 |
| O3P |
P |
O1P |
70.0 |
109.5 |
| P |
O3P |
HO3P |
109.5 |
114.0 |
| O2P |
P |
O1P |
87.7 |
109.5 |
Torsion Angles for ME6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
O2 |
N1 |
180.8 |
180.2 |
| O2 |
C2 |
N1 |
C6 |
178.9 |
179.7 |
| O2 |
C2 |
N3 |
C4 |
179.6 |
180.0 |
| O2 |
C2 |
N1 |
N3 |
180.8 |
180.2 |
| N1 |
C2 |
N3 |
C4 |
0.3 |
0.3 |
| C2 |
N1 |
C6 |
H6 |
182.5 |
180.4 |
| O2 |
C2 |
N3 |
N1 |
179.3 |
179.8 |
| N3 |
C2 |
N1 |
C6 |
358.1 |
359.5 |
| C20 |
N3 |
C2 |
C4 |
180.9 |
180.0 |
| C2 |
N3 |
C4 |
N4 |
180.7 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
0.6 |
0.0 |
| C4 |
N3 |
C2 |
N1 |
0.3 |
0.3 |
| N4 |
C4 |
N3 |
C5 |
180.0 |
180.0 |
| N3 |
C4 |
N4 |
HN4 |
180.0 |
0.0 |
| N3 |
C4 |
N4 |
H17 |
360.0 |
180.0 |
| N3 |
C4 |
C5 |
H5 |
180.0 |
180.0 |
| C20 |
N3 |
C2 |
N1 |
181.2 |
180.3 |
| C2 |
N3 |
C20 |
C4 |
179.1 |
180.0 |
| C20 |
N3 |
C4 |
N4 |
359.8 |
360.0 |
| C20 |
N3 |
C4 |
C5 |
179.7 |
180.0 |
| H20 |
C20 |
N3 |
C4 |
72.6 |
270.0 |
| H20A |
C20 |
H20 |
H20B |
120.0 |
119.9 |
| H20A |
C20 |
N3 |
C4 |
192.6 |
30.0 |
| H20 |
C20 |
H20A |
H20B |
240.0 |
240.1 |
| H20B |
C20 |
N3 |
C4 |
312.6 |
150.0 |
| H20 |
C20 |
H20B |
H20A |
120.0 |
120.0 |
| N3 |
C4 |
N4 |
C5 |
180.0 |
180.0 |
| N4 |
C4 |
C5 |
H5 |
360.0 |
0.0 |
| HN4 |
N4 |
C4 |
H17 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
N4 |
180.0 |
180.0 |
| C5 |
C4 |
N4 |
HN4 |
0.0 |
180.0 |
| C5 |
C4 |
N4 |
H17 |
180.0 |
360.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
| HN4 |
N4 |
C4 |
C5 |
0.0 |
180.0 |
| C4 |
N4 |
HN4 |
H17 |
180.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
2.5 |
0.5 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
| H6 |
C6 |
C5 |
H5 |
358.4 |
359.9 |
| N1 |
C6 |
C5 |
H5 |
178.4 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
358.4 |
0.1 |
| C2' |
C1' |
O4' |
H1' |
238.6 |
241.1 |
| O4' |
C1' |
C2' |
H1' |
115.1 |
118.9 |
| H2' |
C2' |
C1' |
H1' |
48.3 |
23.7 |
| C3' |
C2' |
H2' |
H2'A |
234.8 |
237.2 |
| H2'A |
C2' |
C1' |
H1' |
164.1 |
146.2 |
| C3' |
C2' |
H2'A |
H2' |
123.4 |
122.7 |
| C3' |
C2' |
C1' |
H1' |
288.2 |
265.1 |
| H2' |
C2' |
C3' |
H2'A |
115.8 |
122.6 |
| O3' |
C3' |
C2' |
H2' |
306.2 |
0.0 |
| O3' |
C3' |
C2' |
H2'A |
190.4 |
237.4 |
| C4' |
C3' |
O3' |
H3' |
234.1 |
237.3 |
| H3' |
C3' |
C2' |
H2' |
68.5 |
122.6 |
| H3' |
C3' |
C2' |
H2'A |
312.7 |
359.9 |
| H3' |
C3' |
O3' |
HO3' |
255.8 |
298.8 |
| HO3' |
O3' |
C3' |
H3' |
255.8 |
298.8 |
| C4' |
O4' |
C1' |
H1' |
100.0 |
78.4 |
| C4' |
C3' |
C2' |
H2' |
193.1 |
241.4 |
| C4' |
C3' |
C2' |
H2'A |
77.3 |
118.7 |
| O3' |
C3' |
C4' |
H3' |
122.5 |
122.6 |
| C4' |
C3' |
O3' |
HO3' |
129.9 |
176.1 |
| H4' |
C4' |
C3' |
H3' |
288.4 |
213.6 |
| C5' |
C4' |
C3' |
H3' |
55.1 |
335.9 |
| H5' |
C5' |
C4' |
H4' |
11.9 |
64.1 |
| O5' |
C5' |
H5' |
H5'A |
236.3 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
128.7 |
184.1 |
| O5' |
C5' |
H5'A |
H5' |
122.5 |
120.0 |
| O5' |
C5' |
C4' |
H4' |
251.9 |
304.1 |
| H5' |
C5' |
O5' |
H5'A |
116.8 |
120.0 |
| P |
O5' |
C5' |
H5' |
97.3 |
59.9 |
| P |
O5' |
C5' |
H5'A |
340.6 |
300.0 |
| O2P |
P |
O3P |
O1P |
284.5 |
120.0 |
| O1P |
P |
O3P |
HO3P |
33.2 |
180.0 |
| HO3P |
O3P |
P |
O1P |
33.2 |
180.0 |
| O3P |
P |
O2P |
O1P |
65.6 |
240.0 |
| O2P |
P |
O3P |
HO3P |
317.7 |
300.0 |
| HO2P |
O2P |
P |
O1P |
68.3 |
60.0 |
| H17 |
N4 |
C4 |
C5 |
180.0 |
360.0 |
| C4 |
N4 |
H17 |
HN4 |
180.0 |
180.0 |