PDB Chemical Component MDZ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MDZ

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O43	C31	1.234	1.224
C31	O42	1.240	1.359
C31	C30	1.506	1.518
O42	H42	0.949	0.981
C30	O29	1.449	1.403
C30	C32	1.451	1.543
C30	H30	1.100	1.096
O29	C13	1.391	1.409
C13	O18	1.209	1.225
C13	C12	1.472	1.520
C12	C16	1.543	1.538
C12	N11	1.457	1.444
C12	H12	1.100	1.098
C16	S17	1.798	1.832
C16	C25	1.525	1.529
C16	H16	1.100	1.096
C25	H251	1.100	1.096
C25	H252	1.100	1.095
C25	H253	1.100	1.096
N11	C10	1.312	1.387
N11	H11	0.995	1.015
C10	O15	1.218	1.228
C10	C7	1.494	1.519
C7	C4	1.520	1.529
C7	H7C1	1.100	1.097
C7	H7C2	1.100	1.096
C4	C3	1.525	1.534
C4	H4C1	1.100	1.096
C4	H4C2	1.100	1.096
C3	C2	1.517	1.535
C3	H3C1	1.100	1.098
C3	H3C2	1.100	1.098
C2	N14	1.466	1.462
C2	C1	1.497	1.516
C2	H2	1.100	1.097
N14	H141	1.030	0.997
N14	H142	1.031	0.996
C1	O20	1.242	1.222
C1	O19	1.248	1.358
O19	H19	0.950	0.981
C32	C37	1.435	1.533
C32	C33	1.426	1.535
C32	H32	1.100	1.098
C37	H371	1.100	1.094
C37	H372	1.100	1.096
C37	H373	1.100	1.095
C33	H331	1.100	1.094
C33	H332	1.100	1.096
C33	H333	1.100	1.095
HS1	S17	1.300	1.338

Bond Angles for MDZ

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O43	C31	O42	120.8	122.7
O43	C31	C30	118.5	125.0
O42	C31	C30	120.7	112.3
C31	O42	H42	120.8	115.5
C31	C30	O29	107.4	106.1
C31	C30	C32	113.3	112.0
C31	C30	H30	111.0	110.1
O29	C30	C32	116.2	110.4
O29	C30	H30	107.7	106.7
C30	O29	C13	116.6	113.9
C32	C30	H30	101.0	111.2
C30	C32	C37	130.3	111.7
C30	C32	C33	104.4	111.5
C30	C32	H32	97.0	109.3
O29	C13	O18	120.2	123.5
O29	C13	C12	114.1	111.1
O18	C13	C12	125.7	125.3
C13	C12	C16	109.5	111.5
C13	C12	N11	107.3	106.7
C13	C12	H12	112.5	108.1
C16	C12	N11	113.7	113.9
C16	C12	H12	105.8	110.6
C12	C16	S17	111.8	110.3
C12	C16	C25	110.1	114.3
C12	C16	H16	107.4	109.0
N11	C12	H12	108.1	105.7
C12	N11	C10	123.3	122.1
C12	N11	H11	118.3	118.3
S17	C16	C25	109.5	108.7
S17	C16	H16	108.1	106.3
C25	C16	H16	109.9	108.0
C16	C25	H251	109.5	112.3
C16	C25	H252	109.5	110.8
C16	C25	H253	109.4	111.0
H251	C25	H252	109.5	107.7
H251	C25	H253	109.4	107.9
H252	C25	H253	109.5	106.8
C10	N11	H11	118.4	119.7
N11	C10	O15	120.0	125.0
N11	C10	C7	116.2	111.6
O15	C10	C7	123.8	123.4
C10	C7	C4	108.3	112.4
C10	C7	H7C1	109.7	108.2
C10	C7	H7C2	110.2	108.2
C4	C7	H7C1	109.8	110.0
C4	C7	H7C2	110.2	110.0
C7	C4	C3	109.2	111.1
C7	C4	H4C1	109.5	109.2
C7	C4	H4C2	109.6	109.3
H7C1	C7	H7C2	108.7	108.0
C3	C4	H4C1	109.5	110.2
C3	C4	H4C2	109.7	110.1
C4	C3	C2	112.1	114.6
C4	C3	H3C1	108.8	109.0
C4	C3	H3C2	108.0	108.7
H4C1	C4	H4C2	109.3	106.8
C2	C3	H3C1	108.8	108.9
C2	C3	H3C2	107.9	109.2
C3	C2	N14	109.7	111.5
C3	C2	C1	105.8	112.2
C3	C2	H2	112.4	109.4
H3C1	C3	H3C2	111.3	106.2
N14	C2	C1	111.4	108.3
N14	C2	H2	106.9	107.8
C2	N14	H141	109.5	118.0
C2	N14	H142	109.5	118.0
C1	C2	H2	110.7	107.5
C2	C1	O20	120.5	126.3
C2	C1	O19	118.4	110.5
H141	N14	H142	109.5	122.6
O20	C1	O19	121.0	123.3
C1	O19	H19	118.3	111.9
C37	C32	C33	103.7	108.8
C37	C32	H32	97.8	107.6
C32	C37	H371	109.5	111.4
C32	C37	H372	109.5	110.8
C32	C37	H373	109.5	111.3
C33	C32	H32	126.9	107.8
C32	C33	H331	109.5	111.5
C32	C33	H332	109.5	111.1
C32	C33	H333	109.4	110.8
H371	C37	H372	109.5	107.0
H371	C37	H373	109.4	108.3
H372	C37	H373	109.5	108.0
H331	C33	H332	109.4	108.2
H331	C33	H333	109.4	107.2
H332	C33	H333	109.5	107.9

Torsion Angles for MDZ

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O42	C31	O43	C30	180.4	178.6
O43	C31	O42	H42	180.0	0.1
O43	C31	C30	O29	176.0	34.8
O43	C31	C30	C32	46.2	274.2
O43	C31	C30	H30	293.4	149.9
O43	C31	O42	C30	179.6	181.2
O42	C31	C30	O29	355.6	216.0
O42	C31	C30	C32	225.8	95.5
O42	C31	C30	H30	113.0	331.2
O43	C31	C30	O42	180.4	178.7
C30	C31	O42	H42	0.4	178.9
O29	C30	C31	C32	129.7	120.6
O29	C30	C31	H30	242.5	244.9
C31	C30	O29	C13	145.4	164.5
C32	C30	C31	H30	112.8	124.3
C31	C30	C32	C37	190.8	298.9
C31	C30	C32	C33	68.2	60.9
C31	C30	C32	H32	297.2	180.0
H42	O42	C31	C30	0.4	178.9
C31	C30	O29	C32	231.9	238.4
C31	C30	O29	H30	119.6	117.4
C32	C30	O29	H30	247.7	239.0
O29	C30	C32	C37	65.7	180.9
O29	C30	C32	C33	303.1	302.9
O29	C30	C32	H32	172.1	61.9
C30	O29	C13	O18	350.0	330.0
C30	O29	C13	C12	171.2	152.5
C31	C30	C32	O29	125.1	118.0
C31	C30	C32	H30	241.2	236.4
O29	C30	C32	H30	116.1	118.3
C32	C30	O29	C13	273.5	286.1
C37	C32	C30	C33	122.6	238.0
C37	C32	C30	H32	253.5	119.0
C30	C32	C37	H371	84.6	296.1
C30	C32	C37	H372	204.7	177.1
C30	C32	C37	H373	324.7	57.0
C33	C32	C30	H32	131.0	240.9
C30	C32	C33	H331	263.3	62.1
C30	C32	C33	H332	23.3	301.4
C30	C32	C33	H333	143.3	181.4
C31	C30	H30	O29	242.7	245.2
C31	C30	H30	C32	120.4	124.7
O29	C30	H30	C32	237.7	239.5
H30	C30	O29	C13	25.8	47.1
H30	C30	C32	C37	309.5	62.6
H30	C30	C32	C33	187.0	184.5
H30	C30	C32	H32	56.0	303.6
C13	O29	C30	C32	273.5	286.1
C13	O29	C30	H30	25.8	47.1
O18	C13	O29	C12	178.8	177.5
O29	C13	C12	C16	303.7	265.7
O29	C13	C12	N11	179.8	140.8
O29	C13	C12	H12	61.1	27.5
O29	C13	O18	C12	181.4	182.8
O18	C13	C12	C16	125.0	88.2
O18	C13	C12	N11	1.1	323.3
O18	C13	C12	H12	242.4	210.0
O29	C13	C12	O18	178.7	177.5
C16	C12	C13	N11	123.9	124.9
C16	C12	C13	H12	242.6	238.2
C13	C12	C16	S17	299.9	303.6
C13	C12	C16	C25	178.0	180.9
C13	C12	C16	H16	58.3	60.0
N11	C12	C13	H12	118.8	113.3
C13	C12	N11	C10	223.8	275.1
C13	C12	N11	H11	43.8	95.7
C13	C12	C16	N11	240.0	239.2
C13	C12	C16	H12	121.4	120.3
N11	C12	C16	H12	241.5	241.1
C16	C12	N11	C10	102.5	151.6
C16	C12	N11	H11	282.5	332.3
S17	C16	C12	C25	121.9	122.7
S17	C16	C12	H16	241.5	243.6
C25	C16	C12	H16	119.6	120.9
C12	C16	C25	H251	237.0	60.9
C12	C16	C25	H252	357.1	300.4
C12	C16	C25	H253	117.0	181.9
C13	C12	N11	C16	121.2	123.5
C13	C12	N11	H12	238.5	245.1
C16	C12	N11	H12	117.2	121.6
N11	C12	C16	S17	59.9	64.5
N11	C12	C16	C25	298.0	301.7
N11	C12	C16	H16	178.3	180.8
C10	N11	C12	H11	180.0	179.4
C12	N11	C10	O15	17.2	359.9
C12	N11	C10	C7	195.6	180.0
C13	C12	H12	C16	240.5	237.7
C13	C12	H12	N11	118.3	114.0
C16	C12	H12	N11	237.8	236.3
H12	C12	C16	S17	178.4	183.3
H12	C12	C16	C25	56.5	60.6
H12	C12	C16	H16	296.9	299.7
H12	C12	N11	C10	345.3	30.0
H12	C12	N11	H11	165.3	210.6
S17	C16	C12	N11	59.9	64.5
S17	C16	C12	H12	178.4	183.3
C12	C16	S17	C25	237.7	234.1
C12	C16	S17	H16	118.0	118.0
C25	C16	S17	H16	240.3	244.0
S17	C16	C25	H251	113.7	297.3
S17	C16	C25	H252	233.8	176.8
S17	C16	C25	H253	353.7	58.3
C25	C16	C12	N11	298.0	301.7
C25	C16	C12	H12	56.5	60.6
C12	C16	C25	S17	123.3	123.6
C12	C16	C25	H16	241.9	238.5
S17	C16	C25	H16	118.6	115.0
H251	C25	C16	H252	239.9	120.5
H251	C25	C16	H253	120.0	239.1
H252	C25	C16	H253	240.0	118.6
H16	C16	C12	N11	178.3	180.8
H16	C16	C12	H12	296.9	299.7
C12	C16	H16	S17	239.2	241.1
C12	C16	H16	C25	119.8	124.7
S17	C16	H16	C25	240.6	243.5
H16	C16	C25	H251	355.1	182.4
H16	C16	C25	H252	115.2	61.9
H16	C16	C25	H253	235.2	303.3
H251	C25	C16	H16	355.1	182.4
C16	C25	H251	H252	120.0	237.7
C16	C25	H251	H253	240.0	122.7
H252	C25	H251	H253	120.0	245.0
H252	C25	C16	H16	115.2	61.9
C16	C25	H252	H251	239.9	123.2
C16	C25	H252	H253	120.0	238.9
H251	C25	H252	H253	240.0	115.7
H253	C25	C16	H16	235.2	303.3
C16	C25	H253	H251	120.0	236.5
C16	C25	H253	H252	240.0	121.0
H251	C25	H253	H252	120.0	244.5
C10	N11	C12	H12	345.3	30.0
C12	N11	C10	H11	180.0	180.6
O15	C10	N11	C7	181.5	179.9
N11	C10	C7	C4	262.2	180.0
N11	C10	C7	H7C1	22.0	58.3
N11	C10	C7	H7C2	141.7	301.6
H11	N11	C12	H12	165.3	210.6
C12	N11	H11	C10	180.0	179.4
H11	N11	C10	O15	197.2	179.3
H11	N11	C10	C7	15.6	359.4
O15	C10	N11	H11	197.2	179.3
N11	C10	O15	C7	178.3	180.1
O15	C10	C7	C4	80.6	0.1
O15	C10	C7	H7C1	200.4	238.5
O15	C10	C7	H7C2	320.1	121.7
C7	C10	N11	H11	15.6	359.4
N11	C10	C7	O15	181.6	179.9
C4	C7	C10	H7C1	240.2	121.6
C4	C7	C10	H7C2	120.5	238.4
C10	C7	C4	C3	182.2	181.8
C10	C7	C4	H4C1	302.1	60.0
C10	C7	C4	H4C2	62.0	303.5
H7C1	C7	C10	H7C2	240.4	116.7
C10	C7	C4	H7C1	119.8	239.4
C10	C7	C4	H7C2	239.5	120.6
H7C1	C7	C4	H7C2	119.7	241.2
C3	C4	C7	H4C1	240.1	121.8
C3	C4	C7	H4C2	120.2	238.3
C7	C4	C3	C2	177.4	177.8
C7	C4	C3	H3C1	297.8	300.1
C7	C4	C3	H3C2	58.7	55.4
H4C1	C4	C7	H4C2	240.1	116.5
C10	C7	H7C1	C4	241.1	123.1
C10	C7	H7C1	H7C2	120.6	243.1
C4	C7	H7C1	H7C2	239.4	120.0
H7C1	C7	C4	C3	62.4	302.4
H7C1	C7	C4	H4C1	182.3	180.6
H7C1	C7	C4	H4C2	302.2	64.0
C10	C7	H7C2	C4	119.4	236.9
C10	C7	H7C2	H7C1	239.7	116.8
C4	C7	H7C2	H7C1	120.3	240.0
H7C2	C7	C4	C3	302.7	61.2
H7C2	C7	C4	H4C1	62.7	299.4
H7C2	C7	C4	H4C2	182.6	182.8
C3	C4	C7	H7C1	62.4	302.4
C3	C4	C7	H7C2	302.7	61.2
C7	C4	C3	H4C1	119.9	238.8
C7	C4	C3	H4C2	239.9	121.2
H4C1	C4	C3	H4C2	119.9	242.4
C2	C3	C4	H3C1	239.6	237.7
C2	C3	C4	H3C2	118.7	122.4
C4	C3	C2	N14	296.6	63.8
C4	C3	C2	C1	176.3	302.2
C4	C3	C2	H2	55.3	183.0
H3C1	C3	C4	H3C2	239.1	244.7
H4C1	C4	C7	H7C1	182.3	180.6
H4C1	C4	C7	H7C2	62.7	299.4
C7	C4	H4C1	C3	240.2	122.4
C7	C4	H4C1	H4C2	120.1	241.9
C3	C4	H4C1	H4C2	239.9	119.6
H4C1	C4	C3	C2	57.5	299.0
H4C1	C4	C3	H3C1	177.8	61.3
H4C1	C4	C3	H3C2	298.7	176.6
H4C2	C4	C7	H7C1	302.2	64.0
H4C2	C4	C7	H7C2	182.6	182.8
C7	C4	H4C2	C3	119.9	237.7
C7	C4	H4C2	H4C1	240.0	118.0
C3	C4	H4C2	H4C1	120.1	240.4
H4C2	C4	C3	C2	297.5	56.6
H4C2	C4	C3	H3C1	57.9	178.8
H4C2	C4	C3	H3C2	178.8	294.2
C2	C3	C4	H4C1	57.5	299.0
C2	C3	C4	H4C2	297.5	56.6
C4	C3	C2	H3C1	120.4	122.3
C4	C3	C2	H3C2	241.2	237.8
H3C1	C3	C2	H3C2	120.8	115.6
N14	C2	C3	C1	120.3	121.6
N14	C2	C3	H2	241.2	240.8
C3	C2	N14	H141	66.1	269.0
C3	C2	N14	H142	186.1	102.5
C1	C2	C3	H2	121.0	119.2
C3	C2	C1	O20	292.2	119.7
C3	C2	C1	O19	115.9	298.9
H3C1	C3	C4	H4C1	177.8	61.3
H3C1	C3	C4	H4C2	57.9	178.8
C4	C3	H3C1	C2	237.6	234.4
C4	C3	H3C1	H3C2	118.8	116.9
C2	C3	H3C1	H3C2	241.2	242.6
H3C1	C3	C2	N14	176.2	301.6
H3C1	C3	C2	C1	55.9	180.0
H3C1	C3	C2	H2	294.9	60.7
H3C2	C3	C4	H4C1	298.7	176.6
H3C2	C3	C4	H4C2	178.8	294.2
C4	C3	H3C2	C2	121.4	125.6
C4	C3	H3C2	H3C1	240.6	242.9
C2	C3	H3C2	H3C1	119.3	117.3
H3C2	C3	C2	N14	55.3	186.0
H3C2	C3	C2	C1	295.1	64.4
H3C2	C3	C2	H2	174.1	305.2
N14	C2	C3	H3C1	176.2	301.6
N14	C2	C3	H3C2	55.3	186.0
C3	C2	N14	C1	243.2	236.1
C3	C2	N14	H2	122.1	120.1
C1	C2	N14	H2	238.9	244.0
N14	C2	C1	O20	173.1	356.2
N14	C2	C1	O19	356.7	175.5
H141	N14	C2	H142	240.0	166.5
C1	C2	C3	H3C1	55.9	180.0
C1	C2	C3	H3C2	295.1	64.4
C3	C2	C1	N14	119.2	123.4
C3	C2	C1	H2	238.0	239.7
N14	C2	C1	H2	118.8	116.2
C1	C2	N14	H141	182.9	32.9
C1	C2	N14	H142	302.9	226.3
O20	C1	C2	O19	176.3	180.7
C2	C1	O19	H19	180.0	180.7
H2	C2	C3	H3C1	294.9	60.7
H2	C2	C3	H3C2	174.1	305.2
C3	C2	H2	N14	239.6	238.6
C3	C2	H2	C1	118.1	122.1
N14	C2	H2	C1	238.5	243.5
H2	C2	N14	H141	304.0	148.9
H2	C2	N14	H142	64.0	342.3
H2	C2	C1	O20	54.2	240.0
H2	C2	C1	O19	237.9	59.3
H141	N14	C2	C1	182.9	32.9
H141	N14	C2	H2	304.0	148.9
C2	N14	H141	H142	120.0	194.1
H142	N14	C2	C1	302.9	226.3
H142	N14	C2	H2	64.0	342.3
C2	N14	H142	H141	240.0	165.9
O20	C1	C2	H2	54.2	240.0
C2	C1	O20	O19	183.8	179.2
O20	C1	O19	H19	3.7	0.0
O19	C1	C2	H2	237.9	59.3
C2	C1	O19	O20	176.3	180.7
C37	C32	C30	H30	309.5	62.6
C30	C32	C37	C33	237.1	123.6
C30	C32	C37	H32	106.1	240.1
C33	C32	C37	H32	229.0	116.5
C37	C32	C33	H331	124.7	185.8
C37	C32	C33	H332	244.7	65.0
C37	C32	C33	H333	4.7	305.1
H371	C37	C32	H372	239.9	119.0
H371	C37	C32	H373	120.0	239.1
H372	C37	C32	H373	240.0	120.1
C33	C32	C30	H30	187.0	184.5
C30	C32	C33	C37	138.6	236.4
C30	C32	C33	H32	249.6	120.0
C37	C32	C33	H32	111.0	243.6
C33	C32	C37	H371	207.5	172.5
C33	C32	C37	H372	327.5	53.5
C33	C32	C37	H373	87.5	293.4
H331	C33	C32	H332	240.0	120.8
H331	C33	C32	H333	120.0	240.7
H332	C33	C32	H333	240.0	119.9
H32	C32	C30	H30	56.0	303.6
C30	C32	H32	C37	227.6	121.5
C30	C32	H32	C33	113.9	238.6
C37	C32	H32	C33	246.3	117.1
H32	C32	C37	H371	338.5	56.0
H32	C32	C37	H372	98.6	297.0
H32	C32	C37	H373	218.6	176.9
H32	C32	C33	H331	13.7	302.2
H32	C32	C33	H332	133.7	181.4
H32	C32	C33	H333	253.8	61.5
H371	C37	C32	C33	207.5	172.5
H371	C37	C32	H32	338.5	56.0
C32	C37	H371	H372	120.0	238.8
C32	C37	H371	H373	240.0	122.6
H372	C37	H371	H373	120.0	243.8
H372	C37	C32	C33	327.5	53.5
H372	C37	C32	H32	98.6	297.0
C32	C37	H372	H371	240.0	121.6
C32	C37	H372	H373	120.0	238.0
H371	C37	H372	H373	240.0	116.4
H373	C37	C32	C33	87.5	293.4
H373	C37	C32	H32	218.6	176.9
C32	C37	H373	H371	120.0	237.3
C32	C37	H373	H372	240.0	121.8
H371	C37	H373	H372	120.0	244.4
H331	C33	C32	H32	13.7	302.2
C32	C33	H331	H332	120.0	237.5
C32	C33	H331	H333	240.0	121.4
H332	C33	H331	H333	120.0	243.9
H332	C33	C32	H32	133.7	181.4
C32	C33	H332	H331	240.0	122.7
C32	C33	H332	H333	120.0	238.4
H331	C33	H332	H333	240.0	115.7
H333	C33	C32	H32	253.8	61.5
C32	C33	H333	H331	120.0	238.2
C32	C33	H333	H332	240.0	121.9
H331	C33	H333	H332	120.0	243.7