PDB Chemical Component MDY

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MDY

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CAA	OAP	1.465	1.429
OAP	CAW	1.349	1.359
CAW	CAJ	1.410	1.385
CAW	CAX	1.406	1.398
CAJ	CAH	1.374	1.382
CAH	CAI	1.398	1.383
CAI	CAK	1.402	1.381
CAK	CAX	1.398	1.392
CAX	CAU	1.449	1.484
CAU	CAN	1.423	1.394
CAU	CAL	1.418	1.394
CAN	CAT	1.372	1.380
CAT	CLAF	1.744	1.736
CAT	CAV	1.428	1.391
CAL	CAM	1.398	1.379
CAM	CAV	1.412	1.389
CAV	NAO	1.370	1.398
NAO	CAR	1.319	1.348
CAR	OAD	1.224	1.216
CAR	CAS	1.474	1.469
CAS	CAG	1.431	1.432
CAS	CAQ	1.522	1.364
CAG	NAC	1.165	1.136
CAQ	CAB	1.510	1.507
CAQ	OAE	1.335	1.344
CAA	HAA	1.100	1.090
CAA	HAAA	1.100	1.090
CAA	HAAB	1.100	1.090
CAJ	HAJ	1.080	1.080
CAH	HAH	1.080	1.080
CAI	HAI	1.080	1.080
CAK	HAK	1.080	1.080
CAN	HAN	1.081	1.079
CAL	HAL	1.080	1.080
CAM	HAM	1.080	1.080
NAO	HNAO	1.000	0.970
CAB	HAB	1.101	1.090
CAB	HABA	1.100	1.089
CAB	HABB	1.100	1.090
OAE	HOAE	0.950	0.967

Bond Angles for MDY

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CAA	OAP	CAW	117.6	117.0
OAP	CAA	HAA	109.5	109.5
OAP	CAA	HAAA	109.5	109.5
OAP	CAA	HAAB	109.4	109.4
OAP	CAW	CAJ	119.0	120.2
OAP	CAW	CAX	117.6	120.1
CAJ	CAW	CAX	123.4	119.8
CAW	CAJ	CAH	117.5	120.1
CAW	CAJ	HAJ	121.2	120.0
CAW	CAX	CAK	117.0	119.7
CAW	CAX	CAU	120.8	120.2
CAJ	CAH	CAI	121.1	120.3
CAH	CAJ	HAJ	121.2	120.0
CAJ	CAH	HAH	119.4	119.8
CAH	CAI	CAK	120.3	120.2
CAI	CAH	HAH	119.5	119.9
CAH	CAI	HAI	119.8	119.9
CAI	CAK	CAX	120.6	119.9
CAK	CAI	HAI	119.8	119.9
CAI	CAK	HAK	119.7	120.0
CAK	CAX	CAU	122.2	120.1
CAX	CAK	HAK	119.7	120.1
CAX	CAU	CAN	122.5	120.0
CAX	CAU	CAL	118.0	120.0
CAN	CAU	CAL	119.5	119.9
CAU	CAN	CAT	116.4	119.9
CAU	CAN	HAN	121.8	120.1
CAU	CAL	CAM	123.7	119.9
CAU	CAL	HAL	118.1	120.0
CAN	CAT	CLAF	117.6	120.0
CAN	CAT	CAV	124.7	120.0
CAT	CAN	HAN	121.8	120.0
CLAF	CAT	CAV	117.7	120.0
CAT	CAV	CAM	119.0	120.1
CAT	CAV	NAO	119.2	120.0
CAL	CAM	CAV	116.6	120.1
CAM	CAL	HAL	118.1	120.0
CAL	CAM	HAM	121.7	119.9
CAM	CAV	NAO	121.8	119.9
CAV	CAM	HAM	121.7	120.0
CAV	NAO	CAR	121.8	120.0
CAV	NAO	HNAO	119.1	120.0
NAO	CAR	OAD	122.8	120.0
NAO	CAR	CAS	119.2	120.0
CAR	NAO	HNAO	119.1	120.0
OAD	CAR	CAS	117.8	120.1
CAR	CAS	CAG	117.8	120.0
CAR	CAS	CAQ	120.5	120.0
CAG	CAS	CAQ	121.6	120.0
CAS	CAG	NAC	175.8	179.9
CAS	CAQ	CAB	121.4	120.0
CAS	CAQ	OAE	121.6	120.0
CAB	CAQ	OAE	116.8	120.0
CAQ	CAB	HAB	109.5	109.5
CAQ	CAB	HABA	109.5	109.5
CAQ	CAB	HABB	109.5	109.4
CAQ	OAE	HOAE	109.5	117.0
HAA	CAA	HAAA	109.4	109.5
HAA	CAA	HAAB	109.5	109.5
HAAA	CAA	HAAB	109.5	109.5
HAB	CAB	HABA	109.4	109.5
HAB	CAB	HABB	109.5	109.5
HABA	CAB	HABB	109.5	109.5

Torsion Angles for MDY

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CAA	OAP	CAW	CAJ	344.0	360.0
CAA	OAP	CAW	CAX	163.6	179.7
HAA	CAA	OAP	HAAA	240.0	240.0
HAA	CAA	OAP	HAAB	120.0	120.0
HAAA	CAA	OAP	HAAB	240.0	240.0
CAW	OAP	CAA	HAA	161.1	300.0
CAW	OAP	CAA	HAAA	281.0	60.0
CAW	OAP	CAA	HAAB	41.1	180.0
CAJ	CAW	OAP	CAX	180.4	180.2
OAP	CAW	CAJ	CAH	180.3	180.0
OAP	CAW	CAJ	HAJ	0.3	360.0
OAP	CAW	CAX	CAK	179.9	179.7
OAP	CAW	CAX	CAU	358.9	359.9
OAP	CAW	CAJ	CAX	179.6	179.8
CAJ	CAW	CAX	CAK	359.4	359.5
CAJ	CAW	CAX	CAU	178.5	179.7
CAW	CAJ	CAH	CAI	0.6	0.0
CAH	CAJ	CAW	HAJ	180.0	180.1
CAW	CAJ	CAH	HAH	180.6	180.0
OAP	CAW	CAX	CAJ	180.4	180.2
CAX	CAW	CAJ	CAH	0.8	0.3
CAX	CAW	CAJ	HAJ	180.8	180.2
CAI	CAK	CAX	CAW	359.0	0.5
CAK	CAX	CAW	CAU	180.9	179.7
CAW	CAX	CAK	HAK	179.0	180.3
CAW	CAX	CAU	CAN	45.2	130.0
CAW	CAX	CAU	CAL	223.3	309.8
CAH	CAJ	CAW	CAX	0.8	0.3
CAW	CAJ	CAH	HAJ	180.0	179.9
CAJ	CAH	CAI	CAK	357.9	360.0
CAI	CAH	CAJ	HAH	180.0	180.0
CAJ	CAH	CAI	HAI	177.9	180.0
CAI	CAH	CAJ	HAJ	180.6	180.1
CAJ	CAH	CAI	HAH	180.0	180.0
CAH	CAI	CAK	CAX	2.3	359.8
CAK	CAI	CAH	HAI	180.0	180.0
CAH	CAI	CAK	HAK	182.3	180.0
CAW	CAX	CAK	CAI	359.0	0.5
CAK	CAI	CAH	HAH	177.9	179.9
CAH	CAI	CAK	HAI	180.0	180.0
CAI	CAK	CAX	CAU	180.0	180.3
CAX	CAK	CAI	HAK	180.0	179.8
CAW	CAX	CAK	CAU	179.0	180.3
CAX	CAK	CAI	HAI	182.3	179.7
CAI	CAK	CAX	HAK	180.0	180.2
CAK	CAX	CAU	CAN	224.2	310.3
CAK	CAX	CAU	CAL	42.3	130.0
CAW	CAX	CAU	CAK	181.0	179.7
CAU	CAX	CAK	HAK	360.0	0.0
CAN	CAU	CAX	CAL	182.0	180.3
CAX	CAU	CAN	CAT	181.2	180.0
CAX	CAU	CAN	HAN	1.2	359.9
CAX	CAU	CAL	CAM	178.8	180.0
CAX	CAU	CAL	HAL	358.9	360.0
CAX	CAU	CAN	CAL	178.0	179.7
CAN	CAU	CAL	CAM	357.0	359.8
CAN	CAU	CAL	HAL	177.0	179.7
CAU	CAN	CAT	CLAF	177.4	180.0
CAU	CAN	CAT	CAV	358.9	359.9
CAT	CAN	CAU	HAN	180.0	180.1
CAX	CAU	CAL	CAN	181.9	180.3
CAL	CAU	CAN	CAT	3.2	0.3
CAL	CAU	CAN	HAN	183.2	180.2
CAU	CAL	CAM	CAV	0.5	359.9
CAM	CAL	CAU	HAL	180.0	180.1
CAU	CAL	CAM	HAM	180.5	180.0
CAT	CAN	CAU	CAL	3.2	0.3
CAU	CAN	CAT	HAN	180.0	179.9
CLAF	CAT	CAN	CAV	178.5	180.0
CAN	CAT	CAV	CAM	358.6	359.8
CAN	CAT	CAV	NAO	178.9	180.1
CAN	CAT	CLAF	CAV	181.4	180.0
CLAF	CAT	CAN	HAN	357.4	0.1
CLAF	CAT	CAV	CAM	180.1	179.7
CLAF	CAT	CAV	NAO	0.4	0.1
CAN	CAT	CAV	CLAF	178.5	180.0
CAV	CAT	CAN	HAN	178.9	180.1
CAL	CAM	CAV	CAT	1.7	0.3
CAM	CAV	CAT	NAO	179.7	179.7
CAT	CAV	CAM	HAM	181.7	180.2
CAT	CAV	NAO	CAR	140.8	204.6
CAT	CAV	NAO	HNAO	320.8	24.6
CAU	CAL	CAM	HAL	180.0	179.9
CAT	CAV	CAM	CAL	1.7	0.3
CAL	CAM	CAV	NAO	181.4	180.0
CAV	CAM	CAL	HAM	180.0	179.9
CAT	CAV	CAM	NAO	180.3	180.3
CAV	CAM	CAL	HAL	180.5	180.0
CAL	CAM	CAV	HAM	180.0	180.1
CAM	CAV	NAO	CAR	321.1	24.9
CAM	CAV	NAO	HNAO	141.1	204.9
CAT	CAV	NAO	CAM	179.7	179.7
NAO	CAV	CAM	HAM	1.4	359.9
CAV	NAO	CAR	OAD	360.0	5.5
CAV	NAO	CAR	CAS	185.8	185.5
CAR	NAO	CAV	HNAO	180.0	180.1
CAV	NAO	CAR	HNAO	180.0	179.9
OAD	CAR	NAO	CAS	174.2	180.0
NAO	CAR	CAS	CAG	175.7	0.0
NAO	CAR	CAS	CAQ	359.2	180.0
NAO	CAR	OAD	CAS	185.8	180.0
OAD	CAR	NAO	HNAO	180.0	185.6
OAD	CAR	CAS	CAG	1.3	180.0
OAD	CAR	CAS	CAQ	184.8	360.0
NAO	CAR	CAS	OAD	174.5	180.0
CAS	CAR	NAO	HNAO	5.8	5.5
CAG	CAS	CAR	CAQ	176.5	180.0
CAR	CAS	CAG	NAC	182.0	20.8
CAR	CAS	CAQ	CAB	183.7	180.0
CAR	CAS	CAQ	OAE	358.4	0.1
CAR	CAS	CAG	CAQ	183.5	180.0
CAG	CAS	CAQ	CAB	7.3	360.0
CAG	CAS	CAQ	OAE	182.0	180.0
CAR	CAS	CAQ	CAG	176.4	180.0
CAQ	CAS	CAG	NAC	358.5	200.8
CAB	CAQ	CAS	OAE	185.3	180.0
CAS	CAQ	CAB	HAB	3.3	90.0
CAS	CAQ	CAB	HABA	123.3	210.0
CAS	CAQ	CAB	HABB	243.3	330.0
CAS	CAQ	OAE	HOAE	160.1	180.0
NAC	CAG	CAS	CAQ	358.5	200.8
CAS	CAQ	CAB	OAE	174.9	180.0
CAB	CAQ	OAE	HOAE	335.0	0.1
HAB	CAB	CAQ	HABA	240.0	239.9
HAB	CAB	CAQ	HABB	120.0	120.0
HABA	CAB	CAQ	HABB	240.0	240.0
CAS	CAQ	OAE	CAB	185.1	180.0
OAE	CAQ	CAB	HAB	188.4	269.9
OAE	CAQ	CAB	HABA	308.4	30.0
OAE	CAQ	CAB	HABB	68.4	150.0
HAA	CAA	OAP	CAW	161.1	300.0
OAP	CAA	HAA	HAAA	120.0	120.0
OAP	CAA	HAA	HAAB	240.0	240.1
HAAA	CAA	HAA	HAAB	120.0	120.0
HAAA	CAA	OAP	CAW	281.0	60.0
OAP	CAA	HAAA	HAA	240.0	240.0
OAP	CAA	HAAA	HAAB	120.0	119.9
HAA	CAA	HAAA	HAAB	240.0	240.0
HAAB	CAA	OAP	CAW	41.1	180.0
OAP	CAA	HAAB	HAA	120.0	120.0
OAP	CAA	HAAB	HAAA	240.0	240.0
HAA	CAA	HAAB	HAAA	120.0	120.0
HAJ	CAJ	CAW	CAX	180.8	180.2
CAW	CAJ	HAJ	CAH	180.0	180.1
HAJ	CAJ	CAH	CAI	180.6	180.1
HAJ	CAJ	CAH	HAH	0.6	0.1
CAJ	CAH	HAH	CAI	180.0	180.0
HAH	CAH	CAJ	HAJ	0.6	0.1
HAH	CAH	CAI	CAK	177.9	179.9
HAH	CAH	CAI	HAI	357.9	360.0
CAH	CAI	HAI	CAK	180.0	180.0
HAI	CAI	CAH	HAH	357.9	360.0
HAI	CAI	CAK	CAX	182.3	179.7
HAI	CAI	CAK	HAK	2.3	360.0
CAI	CAK	HAK	CAX	180.0	179.8
HAK	CAK	CAI	HAI	2.3	360.0
HAK	CAK	CAX	CAU	360.0	0.0
HAN	CAN	CAU	CAL	183.2	180.2
CAU	CAN	HAN	CAT	180.0	180.1
HAN	CAN	CAT	CLAF	357.4	0.1
HAN	CAN	CAT	CAV	178.9	180.1
CAU	CAL	HAL	CAM	180.0	180.1
HAL	CAL	CAM	CAV	180.5	180.0
HAL	CAL	CAM	HAM	0.5	0.1
CAL	CAM	HAM	CAV	180.0	179.9
HAM	CAM	CAL	HAL	0.5	0.1
HAM	CAM	CAV	NAO	1.4	359.9
CAV	NAO	HNAO	CAR	180.0	180.1
HNAO	NAO	CAR	OAD	180.0	185.6
HNAO	NAO	CAR	CAS	5.8	5.5
HAB	CAB	CAQ	OAE	188.4	269.9
CAQ	CAB	HAB	HABA	120.0	120.0
CAQ	CAB	HAB	HABB	240.0	240.0
HABA	CAB	HAB	HABB	120.0	120.0
HABA	CAB	CAQ	OAE	308.4	30.0
CAQ	CAB	HABA	HAB	240.0	240.0
CAQ	CAB	HABA	HABB	120.0	119.9
HAB	CAB	HABA	HABB	240.0	240.0
HABB	CAB	CAQ	OAE	68.4	150.0
CAQ	CAB	HABB	HAB	120.0	120.0
CAQ	CAB	HABB	HABA	240.0	240.0
HAB	CAB	HABB	HABA	120.0	120.1