PDB Chemical Component MDO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MDO

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	CA1	1.451	1.469
CA1	C1	1.496	1.507
CA1	CB	1.515	1.530
C1	N2	1.307	1.295
C1	N3	1.312	1.368
N2	CA2	1.347	1.372
CA2	C2	1.461	1.481
CA2	CB2	1.357	1.347
C2	O2	1.234	1.216
C2	N3	1.306	1.351
N3	CA3	1.439	1.466
CA3	C3	1.568	1.506
C3	O3	1.250	1.208
C3	OXT	1.301	1.343
N1	H	1.000	1.009
N1	H2	1.000	1.009
CA1	HA1	1.100	1.090
CB	HB1	1.100	1.090
CB	HB2	1.100	1.090
CB	HB3	1.100	1.090
CB2	HB21	1.080	1.080
CB2	HB22	1.080	1.080
CA3	HA31	1.100	1.090
CA3	HA32	1.100	1.089
OXT	HXT	0.950	0.967

Bond Angles for MDO

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	CA1	C1	116.2	109.4
N1	CA1	CB	114.8	109.5
CA1	N1	H	109.5	111.0
CA1	N1	H2	109.5	110.9
N1	CA1	HA1	102.2	109.5
C1	CA1	CB	114.8	109.5
CA1	C1	N2	123.2	124.3
CA1	C1	N3	122.7	124.2
C1	CA1	HA1	102.1	109.5
CB	CA1	HA1	104.0	109.5
CA1	CB	HB1	109.5	109.4
CA1	CB	HB2	109.5	109.5
CA1	CB	HB3	109.5	109.5
N2	C1	N3	114.2	111.5
C1	N2	CA2	105.5	109.3
C1	N3	C2	108.0	108.5
C1	N3	CA3	130.9	125.7
N2	CA2	C2	106.6	105.5
N2	CA2	CB2	123.6	127.2
C2	CA2	CB2	129.8	127.3
CA2	C2	O2	125.5	127.4
CA2	C2	N3	105.7	105.1
CA2	CB2	HB21	120.0	120.0
CA2	CB2	HB22	120.0	120.0
O2	C2	N3	128.8	127.5
C2	N3	CA3	120.8	125.8
N3	CA3	C3	112.6	109.5
N3	CA3	HA31	108.4	109.5
N3	CA3	HA32	108.5	109.5
CA3	C3	O3	116.6	120.0
CA3	C3	OXT	122.1	120.0
C3	CA3	HA31	108.4	109.4
C3	CA3	HA32	108.4	109.5
O3	C3	OXT	119.8	120.0
C3	OXT	HXT	109.5	117.0
H	N1	H2	109.4	111.1
HB1	CB	HB2	109.5	109.5
HB1	CB	HB3	109.5	109.5
HB2	CB	HB3	109.5	109.5
HB21	CB2	HB22	120.0	120.0
HA31	CA3	HA32	110.5	109.5

Torsion Angles for MDO

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	CA1	N1	CB	137.9	120.0
N1	CA1	C1	N2	223.4	325.0
N1	CA1	C1	N3	45.1	144.8
C1	CA1	N1	HA1	249.8	240.0
CB	CA1	N1	HA1	111.9	120.0
N1	CA1	CB	HB1	180.0	300.0
N1	CA1	CB	HB2	300.0	60.0
N1	CA1	CB	HB3	60.0	180.0
H	N1	CA1	H2	240.0	236.0
N1	CA1	C1	CB	222.1	240.0
C1	CA1	N1	H	180.0	180.0
C1	CA1	N1	H2	300.0	303.9
N1	CA1	C1	HA1	110.2	120.0
CB	CA1	C1	HA1	248.1	240.0
C1	CA1	CB	HB1	41.5	180.0
C1	CA1	CB	HB2	161.5	300.0
C1	CA1	CB	HB3	281.5	60.1
N2	C1	CA1	N3	178.4	180.3
CA1	C1	N2	CA2	179.5	180.0
CA1	C1	N3	C2	181.1	179.8
CA1	C1	N3	CA3	354.2	359.9
N1	CA1	CB	C1	138.5	120.0
CB	CA1	N1	H	42.1	60.0
CB	CA1	N1	H2	162.1	184.0
N1	CA1	CB	HA1	249.2	240.0
CB	CA1	C1	N2	1.3	85.0
CB	CA1	C1	N3	183.0	264.7
C1	CA1	CB	HA1	110.7	120.0
HB1	CB	CA1	HB2	240.0	240.0
HB1	CB	CA1	HB3	120.0	120.0
HB2	CB	CA1	HB3	240.0	240.0
N2	C1	CA1	CB	1.3	85.0
CA1	C1	N2	N3	181.5	179.8
N2	C1	CA1	HA1	113.2	205.0
N2	C1	N3	C2	2.6	359.6
N2	C1	N3	CA3	175.7	179.7
C1	N2	CA2	C2	0.6	360.0
C1	N2	CA2	CB2	178.5	180.0
N3	C1	CA1	CB	183.0	264.7
CA1	C1	N3	N2	178.5	180.2
N3	C1	CA1	HA1	294.8	24.8
N3	C1	N2	CA2	358.0	0.3
CA2	C2	N3	C1	358.1	0.4
O2	C2	N3	C1	179.8	180.1
C2	N3	C1	CA3	186.9	179.9
C1	N3	CA3	C3	268.1	90.0
C1	N3	CA3	HA31	28.1	210.0
C1	N3	CA3	HA32	148.1	330.0
CA2	N2	C1	N3	358.0	0.3
C2	CA2	N2	CB2	182.1	180.0
N2	CA2	C2	O2	179.1	180.0
N2	CA2	C2	N3	0.8	359.8
N2	CA2	CB2	HB21	360.0	0.0
N2	CA2	CB2	HB22	180.0	180.0
C1	N3	C2	CA2	358.1	0.4
N2	CA2	C2	CB2	177.7	180.0
C2	CA2	CB2	HB21	177.3	180.1
C2	CA2	CB2	HB22	357.4	0.0
O2	C2	CA2	N3	178.3	180.3
CA2	C2	N3	CA3	184.1	180.3
N2	CA2	CB2	C2	182.6	180.0
CB2	CA2	C2	O2	1.4	0.0
CB2	CA2	C2	N3	183.1	179.7
HB21	CB2	CA2	HB22	180.0	180.0
C1	N3	C2	O2	179.8	180.1
O2	C2	CA2	CB2	1.4	0.0
CA2	C2	O2	N3	182.1	179.7
O2	C2	N3	CA3	5.9	0.0
C1	N3	C2	CA3	173.9	180.1
N3	C2	CA2	CB2	183.1	179.7
CA2	C2	N3	O2	178.2	180.3
C2	N3	CA3	C3	80.5	270.2
C2	N3	CA3	HA31	200.4	30.1
C2	N3	CA3	HA32	320.5	150.1
C1	N3	CA3	C2	187.6	179.9
N3	CA3	C3	O3	30.7	360.0
N3	CA3	C3	OXT	224.7	180.0
C3	CA3	N3	HA31	240.0	240.0
C3	CA3	N3	HA32	120.0	120.0
HA31	CA3	N3	HA32	240.0	240.0
N3	CA3	C3	HA31	120.0	120.0
N3	CA3	C3	HA32	240.0	240.0
O3	C3	CA3	OXT	166.0	180.0
CA3	C3	OXT	HXT	165.6	179.9
HA31	CA3	C3	HA32	120.0	120.0
CA3	C3	O3	OXT	193.7	180.0
O3	C3	CA3	HA31	270.7	240.0
O3	C3	CA3	HA32	150.7	120.0
O3	C3	OXT	HXT	0.0	359.9
CA3	C3	OXT	O3	165.6	180.0
OXT	C3	CA3	HA31	104.8	60.0
OXT	C3	CA3	HA32	344.7	300.0
H	N1	CA1	C1	180.0	180.0
H	N1	CA1	CB	42.1	60.0
CA1	N1	H	H2	120.0	123.9
H	N1	CA1	HA1	290.2	300.0
H2	N1	CA1	C1	300.0	303.9
H2	N1	CA1	CB	162.1	184.0
CA1	N1	H2	H	240.0	236.1
H2	N1	CA1	HA1	50.2	63.9
N1	CA1	HA1	C1	239.5	240.0
N1	CA1	HA1	CB	119.7	120.0
HA1	CA1	N1	H	290.2	300.0
HA1	CA1	N1	H2	50.2	63.9
C1	CA1	HA1	CB	240.2	240.0
HA1	CA1	C1	N2	113.2	205.0
HA1	CA1	C1	N3	294.8	24.8
HA1	CA1	CB	HB1	290.8	60.0
HA1	CA1	CB	HB2	50.8	180.0
HA1	CA1	CB	HB3	170.8	300.0
HB1	CB	CA1	HA1	290.8	60.0
CA1	CB	HB1	HB2	120.0	120.0
CA1	CB	HB1	HB3	240.0	240.0
HB2	CB	HB1	HB3	120.0	120.0
HB2	CB	CA1	HA1	50.8	180.0
CA1	CB	HB2	HB1	240.0	240.0
CA1	CB	HB2	HB3	120.0	120.0
HB1	CB	HB2	HB3	240.0	240.0
HB3	CB	CA1	HA1	170.8	300.0
CA1	CB	HB3	HB1	120.0	120.0
CA1	CB	HB3	HB2	240.0	240.0
HB1	CB	HB3	HB2	120.0	120.0
CA2	CB2	HB21	HB22	180.0	180.0
CA2	CB2	HB22	HB21	180.0	180.0
N3	CA3	HA31	C3	237.5	240.0
N3	CA3	HA31	HA32	118.7	120.0
HA31	CA3	C3	O3	270.7	240.0
HA31	CA3	C3	OXT	104.8	60.0
C3	CA3	HA31	HA32	241.3	240.0
N3	CA3	HA32	C3	122.5	120.0
N3	CA3	HA32	HA31	241.3	240.0
HA32	CA3	C3	O3	150.7	120.0
HA32	CA3	C3	OXT	344.7	300.0
C3	CA3	HA32	HA31	118.7	120.0