PDB Chemical Component MDN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MDN

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O3	P1	1.587	1.610
O3	HO3	0.950	0.967
P1	O1	1.461	1.480
P1	O2	1.626	1.609
P1	C4	1.478	1.823
O2	HO2	0.949	0.966
C4	P5	1.613	1.823
C4	H41	1.115	1.090
C4	H42	1.116	1.089
P5	O6	1.577	1.480
P5	O7	1.447	1.610
P5	O8	1.487	1.609
O7	HO7	0.950	0.967
O8	HO8	0.950	0.966

Bond Angles for MDN

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
P1	O3	HO3	110.0	106.8
O3	P1	O1	109.9	109.5
O3	P1	O2	99.8	109.5
O3	P1	C4	91.0	109.5
O1	P1	O2	121.6	109.5
O1	P1	C4	116.2	109.5
O2	P1	C4	112.1	109.5
P1	O2	HO2	99.8	106.8
P1	C4	P5	128.8	109.4
P1	C4	H41	105.5	109.5
P1	C4	H42	105.5	109.5
P5	C4	H41	105.5	109.5
P5	C4	H42	105.5	109.5
C4	P5	O6	111.2	109.5
C4	P5	O7	103.8	109.5
C4	P5	O8	98.8	109.5
H41	C4	H42	103.7	109.4
O6	P5	O7	115.6	109.5
O6	P5	O8	111.7	109.5
O7	P5	O8	114.1	109.5
P5	O7	HO7	103.8	106.8
P5	O8	HO8	98.9	106.8

Torsion Angles for MDN

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	P1	O3	O2	128.9	120.0
O1	P1	O3	C4	241.5	240.0
O2	P1	O3	C4	112.7	120.0
O3	P1	O2	HO2	180.0	300.0
O3	P1	C4	P5	126.8	180.0
O3	P1	C4	H41	252.2	300.0
O3	P1	C4	H42	1.5	60.0
HO3	O3	P1	O1	180.0	60.0
HO3	O3	P1	O2	51.2	300.0
HO3	O3	P1	C4	298.5	180.0
O1	P1	O3	HO3	180.0	60.0
O3	P1	O1	O2	244.2	240.0
O3	P1	O1	C4	101.5	120.0
O2	P1	O1	C4	217.3	240.0
O1	P1	O2	HO2	59.3	180.0
O1	P1	C4	P5	239.7	300.0
O1	P1	C4	H41	5.0	60.0
O1	P1	C4	H42	114.4	179.9
O2	P1	O3	HO3	51.2	300.0
O3	P1	O2	O1	120.8	120.0
O3	P1	O2	C4	264.9	240.0
O1	P1	O2	C4	144.1	120.0
O2	P1	C4	P5	25.8	60.0
O2	P1	C4	H41	151.2	180.0
O2	P1	C4	H42	260.5	300.0
C4	P1	O3	HO3	298.5	180.0
O3	P1	C4	O1	247.2	240.0
O3	P1	C4	O2	101.0	120.0
O1	P1	C4	O2	213.8	240.0
C4	P1	O2	HO2	275.1	60.0
P5	C4	P1	H41	234.7	240.0
P5	C4	P1	H42	125.3	120.0
P1	C4	P5	O6	339.9	60.0
P1	C4	P5	O7	104.8	180.0
P1	C4	P5	O8	222.4	300.0
H41	C4	P1	H42	250.6	240.0
HO2	O2	P1	C4	275.1	60.0
P1	C4	P5	H41	125.3	120.0
P1	C4	P5	H42	234.7	240.0
H41	C4	P5	H42	109.4	120.0
O6	P5	C4	O7	235.1	240.0
O6	P5	C4	O8	117.5	120.0
O7	P5	C4	O8	242.4	240.0
C4	P5	O7	HO7	179.9	180.0
C4	P5	O8	HO8	180.0	300.0
P1	C4	H41	P5	221.3	240.0
P1	C4	H41	H42	110.7	120.0
P5	C4	H41	H42	249.4	240.0
H41	C4	P5	O6	214.6	300.0
H41	C4	P5	O7	339.4	60.0
H41	C4	P5	O8	97.1	180.0
P1	C4	H42	P5	138.7	120.0
P1	C4	H42	H41	249.3	240.0
P5	C4	H42	H41	110.7	120.0
H42	C4	P5	O6	105.2	180.1
H42	C4	P5	O7	230.1	300.0
H42	C4	P5	O8	347.7	60.0
O6	P5	C4	H41	214.6	300.0
O6	P5	C4	H42	105.2	180.1
C4	P5	O6	O7	118.0	120.0
C4	P5	O6	O8	250.6	240.0
O7	P5	O6	O8	132.7	120.0
O6	P5	O7	HO7	301.9	300.0
O6	P5	O8	HO8	62.9	180.0
O7	P5	C4	H41	339.4	60.0
O7	P5	C4	H42	230.1	300.0
C4	P5	O7	O6	238.0	240.0
C4	P5	O7	O8	106.4	120.0
O6	P5	O7	O8	228.4	240.0
O7	P5	O8	HO8	289.5	60.0
O8	P5	C4	H41	97.1	180.0
O8	P5	C4	H42	347.7	60.0
C4	P5	O8	O6	117.1	120.0
C4	P5	O8	O7	250.5	240.0
O6	P5	O8	O7	133.4	120.0
O8	P5	O7	HO7	73.5	60.0
HO7	O7	P5	O8	73.5	60.0