PDB Chemical Component MDE

Ideal Model

Chemical Description

Name 5-MERCAPTOETHANOL-2-DECENOYL-COENZYME A
Formula C33 H55 N7 O18 P3 S2
Formal charge 1
Molecular weight 994.877 g/mol
Component type NON-POLYMER

Chemical features

Atom count 118
Chiral atom count 8
Chiral atoms P1A C4B C1B C2B C3B P2A C9P C5'
Bond count 120
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 6-amino-9-{(2R,3R,4S,5R)-3-hydroxy-4-(phosphonooxy)-5-[(3R,5S,10R,20E,23S)-3,5,10-trihydroxy-8,8-dimethyl-3,5-dioxido-9,14,19,26-tetraoxo-23-pentyl-2,4,6-trioxa-18,24-dithia-11,15-diaza-3,5-diphosphahexacos-20-en-1-yl]tetrahydrofuran-2-yl}-7H-purin-9-ium (non-preferred name)
Systematic name (OpenEye OEToolkits) S-[2-[3-[[4-[[[(2R,3S,4R,5R)-5-(6-amino-7H-purin-9-ium-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-1-hydroxy-3,3-dimethyl-2-oxo-butyl]amino]propanoylamino]ethyl] (E,5S)-5-(2-oxoethylsulfanyl)dec-2-enethioate

Chemical Descriptors

Stereo SMILES (CACTVS) CCCCC[C@@H](C/C=C/C(=O)SCCNC(=O)CCN[C@H](O)C(=O)C(C)(C)CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)[n+]2c[nH]c3c(N)ncnc23)SCC=O
SMILES (CACTVS) CCCCC[CH](CC=CC(=O)SCCNC(=O)CCN[CH](O)C(=O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)[n+]2c[nH]c3c(N)ncnc23)SCC=O
Stereo SMILES (OpenEye) CCCCC[C@@H](C\C=C\C(=O)SCCNC(=O)CCNC(C(=O)C(C)(C)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)[n+]2c[nH]c3c2ncnc3N)O)OP(=O)(O)O)O)SCC=O
InChI descriptor InChI=1S/C33H54N7O18P3S2/c1-4-5-6-8-21(62-16-14-41)9-7-10-24(43)63-15-13-35-23(42)11-12-36-31(46)28(45)33(2,3)18-55-61(52,53)58-60(50,51)54-17-22-27(57-59(47,48)49)26(44)32(56-22)40-20-39-25-29(34)37-19-38-30(25)40/h7,10,14,19-22,26-27,31-32,36,44,46H,4-6,8-9,11-13,15-18H2,1-3H3,(H7,34,35,37,38,42,47,48,49,50,51,52,53)/p+1/b10-7+/t21-,22+,26+,27+,31+,32+/m0/s1
InChIKey descriptor IJSMUHMCIYOVMM-UAQBTBCQSA-O

Status Information

Last modified 2011-06-04
Created 2003-07-10
Release status REL
Model PDB code 1PS9
Processing site RCSB