PDB Chemical Component MD7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MD7

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAN CAO 1.567 1.531
CAN CAW 1.556 1.531
CAO CAW 1.513 1.530
CAW CAS 1.586 1.506
CAS OAC 1.382 1.344
CAS CAR 1.597 1.363
CAR CAD 1.436 1.431
CAR CAQ 1.574 1.470
CAD NAA 1.151 1.136
CAQ OAB 1.243 1.216
CAQ NAP 1.326 1.348
NAP CAT 1.335 1.397
CAT CAK 1.403 1.390
CAT CAJ 1.425 1.390
CAK CAM 1.405 1.379
CAM CAV 1.420 1.394
CAJ CAL 1.408 1.379
CAL CAV 1.404 1.395
CAV CAU 1.386 1.483
CAU CAH 1.401 1.394
CAU CAI 1.410 1.393
CAH CAF 1.387 1.380
CAF CAE 1.403 1.383
CAE CAG 1.408 1.384
CAG CAI 1.409 1.381
CAN HAN 1.099 1.090
CAN HANA 1.100 1.090
CAO HAO 1.100 1.090
CAO HAOA 1.100 1.091
CAW HAW 1.100 1.090
OAC HOAC 0.950 0.967
NAP HNAP 0.999 0.970
CAK HAK 1.080 1.079
CAM HAM 1.080 1.080
CAJ HAJ 1.080 1.079
CAL HAL 1.080 1.080
CAH HAH 1.080 1.080
CAF HAF 1.080 1.079
CAE HAE 1.080 1.080
CAG HAG 1.080 1.080
CAI HAI 1.080 1.080

Bond Angles for MD7

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CAO CAN CAW 58.0 60.0
CAN CAO CAW 60.7 60.0
CAO CAN HAN 132.1 117.5
CAO CAN HANA 137.1 117.4
CAN CAO HAO 130.5 117.5
CAN CAO HAOA 135.6 117.4
CAN CAW CAO 61.4 60.0
CAN CAW CAS 125.3 117.5
CAW CAN HAN 132.1 117.5
CAW CAN HANA 137.1 117.5
CAN CAW HAW 129.3 117.4
CAO CAW CAS 112.9 117.5
CAW CAO HAO 130.5 117.5
CAW CAO HAOA 135.7 117.5
CAO CAW HAW 140.0 117.5
CAW CAS OAC 115.4 120.0
CAW CAS CAR 129.1 120.0
CAS CAW HAW 91.4 115.6
OAC CAS CAR 115.5 120.0
CAS OAC HOAC 109.5 117.0
CAS CAR CAD 129.1 120.0
CAS CAR CAQ 117.9 120.0
CAD CAR CAQ 112.9 120.0
CAR CAD NAA 171.0 180.0
CAR CAQ OAB 121.7 120.0
CAR CAQ NAP 114.1 120.0
OAB CAQ NAP 123.7 120.0
CAQ NAP CAT 126.7 120.0
CAQ NAP HNAP 116.7 120.0
NAP CAT CAK 119.7 120.0
NAP CAT CAJ 119.9 119.9
CAT NAP HNAP 116.6 120.0
CAK CAT CAJ 120.4 120.1
CAT CAK CAM 116.7 120.1
CAT CAK HAK 121.7 120.0
CAT CAJ CAL 123.1 120.1
CAT CAJ HAJ 118.4 120.0
CAK CAM CAV 122.5 120.0
CAM CAK HAK 121.6 120.0
CAK CAM HAM 118.8 120.0
CAM CAV CAL 121.2 119.9
CAM CAV CAU 115.7 120.1
CAV CAM HAM 118.8 120.0
CAJ CAL CAV 115.9 119.9
CAL CAJ HAJ 118.5 120.0
CAJ CAL HAL 122.1 120.0
CAL CAV CAU 122.1 120.1
CAV CAL HAL 122.1 120.0
CAV CAU CAH 112.6 120.1
CAV CAU CAI 125.7 120.1
CAH CAU CAI 120.6 119.8
CAU CAH CAF 120.5 119.9
CAU CAH HAH 119.8 120.1
CAU CAI CAG 118.3 119.9
CAU CAI HAI 120.8 120.1
CAH CAF CAE 119.7 120.1
CAF CAH HAH 119.8 120.0
CAH CAF HAF 120.2 120.0
CAF CAE CAG 120.1 120.3
CAE CAF HAF 120.2 119.9
CAF CAE HAE 119.9 119.9
CAE CAG CAI 120.4 120.1
CAG CAE HAE 119.9 119.8
CAE CAG HAG 119.8 119.9
CAI CAG HAG 119.8 119.9
CAG CAI HAI 120.8 120.0
HAN CAN HANA 73.2 115.6
HAO CAO HAOA 75.2 115.6

Torsion Angles for MD7

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CAO CAN CAW CAO -0.0 -0.0
CAO CAN CAW CAS 261.0 252.5
CAW CAN CAO HAN 240.0 252.5
CAW CAN CAO HANA 126.6 107.5
CAO CAN CAW HAW 132.9 107.5
CAN CAO CAW CAS 118.9 107.5
CAW CAO CAN HAO 240.0 252.5
CAW CAO CAN HAOA 126.8 107.5
CAN CAO CAW HAW 241.8 252.6
HAN CAN CAO HANA 246.6 215.1
HAO CAO CAN HAOA 246.8 215.0
CAW CAN CAO CAW -0.0 360.0
CAO CAN CAW HAN 120.0 107.4
CAO CAN CAW HANA 233.4 252.6
CAW CAN CAO HAO 120.0 107.5
CAW CAN CAO HAOA 233.2 252.5
CAO CAW CAN CAS 99.0 107.5
CAN CAW CAO HAO 240.0 252.5
CAN CAW CAO HAOA 126.7 107.4
CAO CAW CAN HAW 227.1 252.5
CAN CAW CAS OAC 251.7 60.1
CAN CAW CAS CAR 74.8 240.1
CAS CAW CAN HAW 128.1 145.0
HAN CAN CAW HANA 113.5 145.2
CAW CAO CAN CAW -0.0 360.0
CAW CAO CAN HAN 120.0 107.5
CAW CAO CAN HANA 233.4 252.5
CAN CAO CAW HAO 120.0 107.5
CAN CAO CAW HAOA 233.3 252.6
CAN CAW CAO CAS 241.1 252.5
CAO CAW CAN HAN 240.0 252.6
CAO CAW CAN HANA 126.6 107.4
CAN CAW CAO HAW 118.2 107.4
CAO CAW CAS OAC 181.5 351.4
CAO CAW CAS CAR 4.6 171.4
CAS CAW CAO HAW 237.1 214.9
HAO CAO CAW HAOA 113.3 145.1
CAN CAW CAS CAO 70.2 68.6
CAS CAW CAN HAN 141.0 145.1
CAS CAW CAN HANA 27.6 359.9
CAN CAW CAS HAW 217.5 214.4
CAS CAW CAO HAO 358.9 360.0
CAS CAW CAO HAOA 245.6 214.9
CAO CAW CAS HAW 147.3 145.8
OAC CAS CAW CAR 176.9 180.0
CAW CAS OAC HOAC 29.2 185.7
CAW CAS CAR CAD 355.9 9.3
CAW CAS CAR CAQ 175.4 189.4
CAW CAS OAC CAR 182.7 180.0
OAC CAS CAW HAW 34.1 205.7
OAC CAS CAR CAD 179.0 189.3
OAC CAS CAR CAQ 358.5 9.4
CAW CAS CAR OAC 176.9 180.0
CAR CAS CAW HAW 217.2 25.7
CAR CAS OAC HOAC 206.5 5.7
CAD CAR CAS CAQ 180.5 179.9
CAS CAR CAD NAA 173.3 34.6
CAS CAR CAQ OAB 183.2 7.0
CAS CAR CAQ NAP 355.8 187.1
CAS CAR CAD CAQ 179.5 180.1
CAD CAR CAQ OAB 2.8 187.1
CAD CAR CAQ NAP 175.3 7.2
CAS CAR CAQ CAD 180.4 179.9
CAQ CAR CAD NAA 353.8 214.6
OAB CAQ CAR NAP 187.5 179.9
CAR CAQ NAP CAT 178.7 174.5
CAR CAQ NAP HNAP 358.7 354.3
NAA CAD CAR CAQ 353.8 214.6
CAR CAQ OAB NAP 171.8 180.1
OAB CAQ NAP CAT 351.1 354.6
OAB CAQ NAP HNAP 171.1 174.4
CAR CAQ NAP OAB 187.6 179.9
CAQ NAP CAT CAK 332.4 139.7
CAQ NAP CAT CAJ 154.8 319.4
CAT NAP CAQ HNAP 180.0 180.1
CAQ NAP CAT HNAP 180.0 179.9
CAK CAT NAP CAJ 177.7 180.3
NAP CAT CAK CAM 183.5 180.0
NAP CAT CAK HAK 3.5 359.9
NAP CAT CAJ CAL 176.6 180.0
NAP CAT CAJ HAJ 356.6 0.0
NAP CAT CAK CAJ 182.3 179.7
CAK CAT NAP HNAP 152.4 319.9
CAK CAT CAJ CAL 359.0 359.7
CAK CAT CAJ HAJ 179.0 179.7
CAT CAK CAM CAV 356.6 359.9
CAM CAK CAT HAK 180.0 180.1
CAT CAK CAM HAM 176.6 179.9
NAP CAT CAJ CAK 177.7 180.3
CAJ CAT NAP HNAP 334.8 139.6
CAJ CAT CAK CAM 1.1 0.3
CAJ CAT CAK HAK 181.1 180.3
CAT CAJ CAL CAV 3.0 0.1
CAL CAJ CAT HAJ 180.0 180.0
CAT CAJ CAL HAL 183.0 180.0
CAM CAK CAT CAJ 1.1 0.3
CAT CAK CAM HAK 180.0 179.9
CAK CAM CAV CAL 5.6 359.8
CAK CAM CAV CAU 174.0 180.0
CAV CAM CAK HAM 180.0 180.0
CAV CAM CAK HAK 176.6 180.0
CAK CAM CAV HAM 180.0 180.0
CAJ CAL CAV CAM 354.9 0.2
CAL CAV CAM CAU 191.7 179.9
CAM CAV CAL HAL 174.9 180.3
CAM CAV CAU CAH 232.3 180.0
CAM CAV CAU CAI 40.6 359.8
CAT CAJ CAL HAJ 180.0 180.0
CAM CAV CAL CAJ 354.9 0.2
CAJ CAL CAV CAU 187.3 180.0
CAV CAL CAJ HAL 180.0 180.1
CAM CAV CAL CAU 167.6 180.1
CAL CAV CAM HAM 185.6 179.8
CAV CAL CAJ HAJ 183.0 180.1
CAJ CAL CAV HAL 180.0 179.9
CAL CAV CAU CAH 40.5 0.2
CAL CAV CAU CAI 208.8 180.0
CAM CAV CAU CAL 191.8 179.9
CAU CAV CAM HAM 354.0 360.0
CAU CAV CAL HAL 7.3 0.1
CAH CAU CAV CAI 191.7 180.2
CAV CAU CAH CAF 175.5 180.0
CAV CAU CAH HAH 355.4 0.0
CAV CAU CAI CAG 185.7 179.7
CAV CAU CAI HAI 5.7 359.9
CAV CAU CAH CAI 169.0 179.8
CAH CAU CAI CAG 353.1 359.5
CAH CAU CAI HAI 173.1 179.7
CAU CAH CAF CAE 357.1 0.0
CAF CAH CAU HAH 180.0 180.0
CAU CAH CAF HAF 177.1 180.0
CAV CAU CAI CAH 192.6 180.2
CAI CAU CAH CAF 6.5 0.2
CAI CAU CAH HAH 186.5 180.2
CAE CAG CAI CAU 3.8 0.5
CAU CAI CAG HAG 183.8 180.3
CAG CAI CAU HAI 180.0 179.8
CAF CAH CAU CAI 6.5 0.2
CAU CAH CAF HAH 180.0 180.0
CAH CAF CAE CAG 359.9 360.0
CAE CAF CAH HAF 180.0 180.1
CAH CAF CAE HAE 179.9 179.9
CAE CAF CAH HAH 177.1 180.1
CAH CAF CAE HAF 180.0 179.9
CAF CAE CAG CAI 359.6 359.7
CAG CAE CAF HAE 180.0 180.0
CAF CAE CAG HAG 179.6 180.0
CAU CAI CAG CAE 3.8 0.5
CAG CAE CAF HAF 179.9 180.0
CAF CAE CAG HAE 180.0 180.0
CAI CAG CAE HAG 180.0 179.7
CAE CAG CAI HAI 183.8 180.3
CAU CAI CAG HAI 180.0 180.2
CAI CAG CAE HAE 179.6 179.8
CAE CAG CAI HAG 180.0 180.3
CAO CAN HAN CAW 278.5 291.4
HAN CAN CAO CAW 120.0 107.5
CAO CAN HAN HANA 139.2 145.6
HAN CAN CAO HAO 240.0 215.0
HAN CAN CAO HAOA 353.2 0.1
HAN CAN CAW CAO 240.0 252.6
HAN CAN CAW CAS 141.0 145.1
CAW CAN HAN HANA 220.7 214.2
HAN CAN CAW HAW 12.9 0.1
CAO CAN HANA CAW 90.7 68.6
HANA CAN CAO CAW 233.4 252.5
CAO CAN HANA HAN 225.4 214.4
HANA CAN CAO HAO 353.4 360.0
HANA CAN CAO HAOA 106.6 145.0
HANA CAN CAW CAO 126.6 107.4
HANA CAN CAW CAS 27.6 359.9
CAW CAN HANA HAN 134.6 145.8
HANA CAN CAW HAW 259.5 214.9
HAO CAO CAN CAW 120.0 107.5
CAN CAO HAO CAW 276.7 291.4
HAO CAO CAN HAN 240.0 215.0
HAO CAO CAN HANA 353.4 360.0
CAN CAO HAO HAOA 138.3 145.7
HAO CAO CAW CAS 358.9 360.0
CAW CAO HAO HAOA 221.6 214.3
HAO CAO CAW HAW 121.8 145.1
HAOA CAO CAN CAW 233.2 252.5
CAN CAO HAOA CAW 92.5 68.6
HAOA CAO CAN HAN 353.2 0.1
HAOA CAO CAN HANA 106.6 145.0
CAN CAO HAOA HAO 226.3 214.3
HAOA CAO CAW CAS 245.6 214.9
CAW CAO HAOA HAO 133.8 145.7
HAOA CAO CAW HAW 8.6 0.0
CAN CAW HAW CAO 269.3 291.4
CAN CAW HAW CAS 140.0 145.6
HAW CAW CAN HAN 12.9 0.1
HAW CAW CAN HANA 259.5 214.9
CAO CAW HAW CAS 230.7 214.2
HAW CAW CAO HAO 121.8 145.1
HAW CAW CAO HAOA 8.6 0.0
HAW CAW CAS OAC 34.1 205.7
HAW CAW CAS CAR 217.2 25.7
HOAC OAC CAS CAR 206.5 5.7
CAQ NAP HNAP CAT 180.0 180.1
HNAP NAP CAT CAK 152.4 319.9
HNAP NAP CAT CAJ 334.8 139.6
HAK CAK CAT CAJ 181.1 180.3
CAT CAK HAK CAM 180.0 180.1
HAK CAK CAM CAV 176.6 180.0
HAK CAK CAM HAM 356.6 360.0
CAK CAM HAM CAV 180.0 180.0
HAM CAM CAK HAK 356.6 360.0
HAM CAM CAV CAL 185.6 179.8
HAM CAM CAV CAU 354.0 360.0
CAT CAJ HAJ CAL 180.0 180.0
HAJ CAJ CAL CAV 183.0 180.1
HAJ CAJ CAL HAL 2.9 360.0
CAJ CAL HAL CAV 180.0 180.1
HAL CAL CAJ HAJ 2.9 360.0
HAL CAL CAV CAU 7.3 0.1
HAH CAH CAU CAI 186.5 180.2
CAU CAH HAH CAF 180.0 180.0
HAH CAH CAF CAE 177.1 180.1
HAH CAH CAF HAF 357.1 360.0
CAH CAF HAF CAE 180.0 180.1
HAF CAF CAH HAH 357.1 360.0
HAF CAF CAE CAG 179.9 180.0
HAF CAF CAE HAE 359.9 0.0
CAF CAE HAE CAG 180.0 180.0
HAE CAE CAF HAF 359.9 0.0
HAE CAE CAG CAI 179.6 179.8
HAE CAE CAG HAG 359.6 0.0
CAE CAG HAG CAI 180.0 179.7
HAG CAG CAE HAE 359.6 0.0
HAG CAG CAI HAI 3.8 0.1
CAU CAI HAI CAG 180.0 179.8
HAI CAI CAG HAG 3.8 0.1