PDB Chemical Component MCM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MCM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.524 |
1.392 |
| N |
HN1 |
1.020 |
0.970 |
| N |
HN2 |
1.020 |
0.969 |
| CA |
C2 |
1.444 |
1.387 |
| CA |
C9 |
1.450 |
1.395 |
| C2 |
C3 |
1.394 |
1.385 |
| C2 |
H2 |
1.103 |
1.081 |
| C3 |
C7 |
1.534 |
1.407 |
| C3 |
O1 |
1.470 |
1.349 |
| C4 |
C5 |
1.488 |
1.409 |
| C4 |
O1 |
1.434 |
1.342 |
| C4 |
O2 |
1.254 |
1.218 |
| C5 |
C6 |
1.584 |
1.359 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
C7 |
1.556 |
1.463 |
| C6 |
C10 |
1.590 |
1.507 |
| C7 |
C8 |
1.457 |
1.399 |
| C8 |
C9 |
1.375 |
1.364 |
| C8 |
H8 |
1.103 |
1.080 |
| C9 |
H9 |
1.103 |
1.081 |
| C10 |
H101 |
1.115 |
1.090 |
| C10 |
H102 |
1.115 |
1.090 |
| C10 |
H103 |
1.114 |
1.089 |
Bond Angles for MCM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
109.5 |
120.0 |
| CA |
N |
HN2 |
117.0 |
120.0 |
| N |
CA |
C2 |
117.0 |
119.8 |
| N |
CA |
C9 |
115.2 |
119.8 |
| HN1 |
N |
HN2 |
109.4 |
120.1 |
| C2 |
CA |
C9 |
127.8 |
120.4 |
| CA |
C2 |
C3 |
114.5 |
119.8 |
| CA |
C2 |
H2 |
124.3 |
120.1 |
| CA |
C9 |
C8 |
118.5 |
120.4 |
| CA |
C9 |
H9 |
123.3 |
119.8 |
| C3 |
C2 |
H2 |
121.2 |
120.1 |
| C2 |
C3 |
C7 |
118.6 |
119.4 |
| C2 |
C3 |
O1 |
122.1 |
120.7 |
| C7 |
C3 |
O1 |
119.1 |
119.9 |
| C3 |
C7 |
C6 |
114.4 |
119.0 |
| C3 |
C7 |
C8 |
123.1 |
120.1 |
| C3 |
O1 |
C4 |
126.3 |
121.5 |
| C5 |
C4 |
O1 |
121.3 |
121.7 |
| C5 |
C4 |
O2 |
119.1 |
119.1 |
| C4 |
C5 |
C6 |
114.5 |
119.8 |
| C4 |
C5 |
H5 |
119.9 |
120.1 |
| O1 |
C4 |
O2 |
119.1 |
119.2 |
| C6 |
C5 |
H5 |
125.5 |
120.1 |
| C5 |
C6 |
C7 |
124.0 |
118.2 |
| C5 |
C6 |
C10 |
118.0 |
120.9 |
| C7 |
C6 |
C10 |
117.4 |
120.9 |
| C6 |
C7 |
C8 |
122.5 |
121.0 |
| C6 |
C10 |
H101 |
109.1 |
109.5 |
| C6 |
C10 |
H102 |
118.0 |
109.5 |
| C6 |
C10 |
H103 |
109.1 |
109.5 |
| C7 |
C8 |
C9 |
117.0 |
119.8 |
| C7 |
C8 |
H8 |
124.2 |
120.1 |
| C9 |
C8 |
H8 |
118.8 |
120.1 |
| C8 |
C9 |
H9 |
118.2 |
119.8 |
| H101 |
C10 |
H102 |
109.1 |
109.5 |
| H101 |
C10 |
H103 |
101.0 |
109.5 |
| H102 |
C10 |
H103 |
109.1 |
109.4 |
Torsion Angles for MCM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2 |
234.8 |
180.0 |
| C2 |
CA |
N |
C9 |
179.9 |
180.0 |
| N |
CA |
C2 |
C3 |
171.8 |
180.0 |
| N |
CA |
C2 |
H2 |
351.8 |
-0.0 |
| N |
CA |
C9 |
C8 |
188.6 |
180.0 |
| N |
CA |
C9 |
H9 |
8.6 |
360.0 |
| CA |
N |
HN1 |
HN2 |
129.5 |
180.0 |
| HN1 |
N |
CA |
C2 |
54.8 |
180.0 |
| HN1 |
N |
CA |
C9 |
234.9 |
360.0 |
| CA |
N |
HN2 |
HN1 |
234.8 |
180.0 |
| HN2 |
N |
CA |
C2 |
180.0 |
-0.0 |
| HN2 |
N |
CA |
C9 |
0.1 |
180.0 |
| C2 |
CA |
N |
HN1 |
54.8 |
180.0 |
| C2 |
CA |
N |
HN2 |
180.0 |
-0.0 |
| N |
CA |
C2 |
C9 |
180.1 |
180.0 |
| C2 |
CA |
C9 |
C8 |
8.7 |
-0.0 |
| C2 |
CA |
C9 |
H9 |
188.7 |
180.0 |
| C3 |
C2 |
CA |
H2 |
180.0 |
180.0 |
| CA |
C2 |
C3 |
C7 |
2.7 |
0.2 |
| CA |
C2 |
C3 |
O1 |
178.8 |
180.0 |
| C9 |
CA |
N |
HN1 |
234.9 |
360.0 |
| C9 |
CA |
N |
HN2 |
0.1 |
180.0 |
| N |
CA |
C9 |
C2 |
179.9 |
180.0 |
| C9 |
CA |
C2 |
C3 |
351.7 |
-0.0 |
| C9 |
CA |
C2 |
H2 |
171.7 |
180.0 |
| C7 |
C8 |
C9 |
CA |
357.0 |
359.8 |
| CA |
C9 |
C8 |
H8 |
177.0 |
179.9 |
| C8 |
C9 |
CA |
H9 |
180.0 |
180.0 |
| C3 |
C2 |
CA |
C9 |
351.7 |
-0.0 |
| CA |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C7 |
C3 |
C2 |
O1 |
183.9 |
180.2 |
| C2 |
C3 |
C7 |
C6 |
182.5 |
180.2 |
| C2 |
C3 |
C7 |
C8 |
1.9 |
359.5 |
| C2 |
C3 |
O1 |
C4 |
180.5 |
180.0 |
| H2 |
C2 |
CA |
C9 |
171.7 |
180.0 |
| CA |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C7 |
182.7 |
180.2 |
| H2 |
C2 |
C3 |
O1 |
358.8 |
-0.0 |
| C7 |
C3 |
C2 |
H2 |
182.7 |
180.2 |
| C2 |
C3 |
C7 |
O1 |
176.2 |
179.8 |
| C7 |
C3 |
O1 |
C4 |
356.5 |
359.8 |
| C5 |
C6 |
C7 |
C3 |
355.4 |
359.6 |
| C3 |
C7 |
C6 |
C10 |
165.9 |
179.8 |
| C6 |
C7 |
C3 |
C8 |
180.6 |
180.7 |
| C3 |
C7 |
C8 |
C9 |
358.3 |
0.5 |
| C3 |
C7 |
C8 |
H8 |
178.3 |
180.3 |
| O1 |
C3 |
C2 |
H2 |
358.8 |
-0.0 |
| C2 |
C3 |
O1 |
C7 |
183.9 |
180.2 |
| O1 |
C3 |
C7 |
C6 |
6.3 |
0.5 |
| O1 |
C3 |
C7 |
C8 |
185.7 |
179.8 |
| C5 |
C4 |
O1 |
C3 |
358.0 |
-0.0 |
| C3 |
O1 |
C4 |
O2 |
170.2 |
180.0 |
| C3 |
O1 |
C4 |
C5 |
358.0 |
-0.0 |
| O1 |
C4 |
C5 |
O2 |
172.2 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
359.8 |
0.2 |
| C4 |
C5 |
C6 |
C10 |
189.3 |
180.0 |
| C5 |
C4 |
O1 |
O2 |
187.8 |
180.0 |
| O1 |
C4 |
C5 |
C6 |
3.7 |
-0.0 |
| O1 |
C4 |
C5 |
H5 |
183.6 |
180.0 |
| C5 |
C4 |
O2 |
O1 |
172.4 |
180.0 |
| O2 |
C4 |
C5 |
C6 |
191.5 |
180.0 |
| O2 |
C4 |
C5 |
H5 |
11.4 |
-0.0 |
| C3 |
C7 |
C6 |
C5 |
355.4 |
359.6 |
| C6 |
C5 |
C4 |
O1 |
3.7 |
-0.0 |
| C6 |
C5 |
C4 |
O2 |
191.5 |
180.0 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
C10 |
170.5 |
180.2 |
| C5 |
C6 |
C7 |
C8 |
176.0 |
180.3 |
| C5 |
C6 |
C10 |
H101 |
54.7 |
360.0 |
| C5 |
C6 |
C10 |
H102 |
180.0 |
120.0 |
| C5 |
C6 |
C10 |
H103 |
305.3 |
240.0 |
| H5 |
C5 |
C4 |
O1 |
183.6 |
180.0 |
| H5 |
C5 |
C4 |
O2 |
11.4 |
-0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
C7 |
179.8 |
180.2 |
| H5 |
C5 |
C6 |
C10 |
9.3 |
-0.0 |
| C6 |
C7 |
C3 |
O1 |
6.3 |
0.5 |
| C3 |
C7 |
C6 |
C8 |
179.4 |
179.3 |
| C7 |
C6 |
C5 |
H5 |
179.8 |
180.2 |
| C5 |
C6 |
C7 |
C10 |
189.5 |
179.8 |
| C7 |
C6 |
C10 |
H101 |
243.6 |
179.8 |
| C7 |
C6 |
C10 |
H102 |
8.9 |
299.8 |
| C7 |
C6 |
C10 |
H103 |
134.2 |
59.8 |
| C6 |
C7 |
C8 |
C9 |
177.6 |
179.8 |
| C6 |
C7 |
C8 |
H8 |
357.6 |
359.6 |
| C10 |
C6 |
C5 |
H5 |
9.3 |
-0.0 |
| C5 |
C6 |
C10 |
C7 |
171.1 |
180.2 |
| C10 |
C6 |
C7 |
C8 |
346.5 |
0.5 |
| H101 |
C10 |
C6 |
H102 |
234.8 |
240.0 |
| H101 |
C10 |
C6 |
H103 |
109.5 |
120.0 |
| H102 |
C10 |
C6 |
H103 |
234.7 |
240.0 |
| CA |
C9 |
C8 |
C7 |
357.0 |
359.8 |
| C8 |
C7 |
C3 |
O1 |
185.7 |
179.8 |
| C3 |
C7 |
C8 |
C6 |
180.7 |
180.7 |
| C8 |
C7 |
C6 |
C10 |
346.5 |
0.5 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.2 |
| C7 |
C8 |
C9 |
H9 |
177.0 |
179.8 |
| CA |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
179.8 |
| C7 |
C8 |
H8 |
C9 |
180.0 |
180.2 |
| H8 |
C8 |
C9 |
H9 |
357.0 |
359.9 |
| CA |
C9 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
H8 |
357.0 |
359.9 |
| C6 |
C10 |
H101 |
H102 |
130.2 |
120.0 |
| C6 |
C10 |
H101 |
H103 |
245.1 |
240.0 |
| H102 |
C10 |
H101 |
H103 |
114.9 |
120.0 |
| C6 |
C10 |
H102 |
H101 |
234.8 |
240.0 |
| C6 |
C10 |
H102 |
H103 |
125.3 |
120.0 |
| H101 |
C10 |
H102 |
H103 |
250.5 |
240.0 |
| C6 |
C10 |
H103 |
H101 |
114.9 |
120.0 |
| C6 |
C10 |
H103 |
H102 |
229.7 |
240.0 |
| H101 |
C10 |
H103 |
H102 |
114.8 |
120.0 |