PDB Chemical Component MCL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MCL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.444 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| CA |
CB |
1.525 |
1.530 |
| CA |
C |
1.535 |
1.508 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.539 |
1.530 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CG |
CD |
1.537 |
1.530 |
| CG |
HG2 |
1.100 |
1.089 |
| CG |
HG3 |
1.100 |
1.090 |
| CD |
CE |
1.540 |
1.530 |
| CD |
HD2 |
1.100 |
1.090 |
| CD |
HD3 |
1.100 |
1.090 |
| CE |
NZ |
1.466 |
1.465 |
| CE |
HE2 |
1.100 |
1.089 |
| CE |
HE3 |
1.100 |
1.090 |
| NZ |
CX1 |
1.255 |
1.281 |
| CX1 |
C1 |
1.504 |
1.507 |
| CX1 |
CX2 |
1.480 |
1.482 |
| C1 |
H11 |
1.100 |
1.091 |
| C1 |
H12 |
1.100 |
1.090 |
| C1 |
H13 |
1.100 |
1.090 |
| CX2 |
O1 |
1.263 |
1.347 |
| CX2 |
O2 |
1.268 |
1.214 |
| O1 |
HO1 |
0.951 |
0.967 |
| C |
O |
1.245 |
1.208 |
| C |
OXT |
|
1.342 |
| OXT |
HXT |
|
0.967 |
Bond Angles for MCL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.4 |
111.0 |
| N |
CA |
CB |
109.3 |
109.5 |
| N |
CA |
C |
105.8 |
109.4 |
| N |
CA |
HA |
110.9 |
109.5 |
| H |
N |
H2 |
109.5 |
111.0 |
| CB |
CA |
C |
111.7 |
109.5 |
| CB |
CA |
HA |
109.7 |
109.5 |
| CA |
CB |
CG |
113.1 |
109.5 |
| CA |
CB |
HB2 |
108.6 |
109.5 |
| CA |
CB |
HB3 |
108.6 |
109.5 |
| C |
CA |
HA |
109.6 |
109.5 |
| CA |
C |
O |
121.2 |
120.0 |
| CA |
C |
OXT |
|
120.0 |
| CG |
CB |
HB2 |
108.6 |
109.5 |
| CG |
CB |
HB3 |
108.6 |
109.4 |
| CB |
CG |
CD |
111.6 |
109.5 |
| CB |
CG |
HG2 |
109.0 |
109.5 |
| CB |
CG |
HG3 |
108.9 |
109.4 |
| HB2 |
CB |
HB3 |
109.5 |
109.5 |
| CD |
CG |
HG2 |
108.9 |
109.5 |
| CD |
CG |
HG3 |
109.0 |
109.5 |
| CG |
CD |
CE |
110.4 |
109.5 |
| CG |
CD |
HD2 |
109.2 |
109.5 |
| CG |
CD |
HD3 |
109.3 |
109.5 |
| HG2 |
CG |
HG3 |
109.5 |
109.5 |
| CE |
CD |
HD2 |
109.2 |
109.5 |
| CE |
CD |
HD3 |
109.2 |
109.4 |
| CD |
CE |
NZ |
105.0 |
109.5 |
| CD |
CE |
HE2 |
110.6 |
109.5 |
| CD |
CE |
HE3 |
110.6 |
109.4 |
| HD2 |
CD |
HD3 |
109.5 |
109.4 |
| NZ |
CE |
HE2 |
110.6 |
109.5 |
| NZ |
CE |
HE3 |
110.6 |
109.5 |
| CE |
NZ |
CX1 |
130.6 |
120.0 |
| HE2 |
CE |
HE3 |
109.5 |
109.5 |
| NZ |
CX1 |
C1 |
118.8 |
119.9 |
| NZ |
CX1 |
CX2 |
119.8 |
120.0 |
| C1 |
CX1 |
CX2 |
121.4 |
120.0 |
| CX1 |
C1 |
H11 |
109.5 |
109.5 |
| CX1 |
C1 |
H12 |
109.5 |
109.4 |
| CX1 |
C1 |
H13 |
109.5 |
109.5 |
| CX1 |
CX2 |
O1 |
119.8 |
120.0 |
| CX1 |
CX2 |
O2 |
118.0 |
120.0 |
| H11 |
C1 |
H12 |
109.5 |
109.5 |
| H11 |
C1 |
H13 |
109.4 |
109.5 |
| H12 |
C1 |
H13 |
109.5 |
109.5 |
| O1 |
CX2 |
O2 |
122.1 |
120.0 |
| CX2 |
O1 |
HO1 |
109.5 |
117.0 |
| O |
C |
OXT |
|
120.0 |
| C |
OXT |
HXT |
|
117.0 |
Torsion Angles for MCL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| CB |
CA |
N |
C |
239.7 |
240.0 |
| CB |
CA |
N |
HA |
121.0 |
120.0 |
| N |
CA |
CB |
CG |
172.1 |
295.0 |
| N |
CA |
CB |
HB2 |
292.6 |
55.0 |
| N |
CA |
CB |
HB3 |
51.5 |
175.0 |
| C |
CA |
N |
HA |
241.3 |
240.0 |
| N |
CA |
C |
O |
292.3 |
340.0 |
| N |
CA |
C |
OXT |
|
160.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
CB |
180.0 |
176.1 |
| H |
N |
CA |
C |
300.3 |
296.0 |
| H |
N |
CA |
HA |
59.0 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
CB |
300.0 |
300.0 |
| H2 |
N |
CA |
C |
60.3 |
60.0 |
| H2 |
N |
CA |
HA |
179.0 |
180.0 |
| CB |
CA |
N |
H |
180.0 |
176.1 |
| CB |
CA |
N |
H2 |
300.0 |
300.0 |
| N |
CA |
CB |
C |
116.7 |
120.0 |
| N |
CA |
CB |
HA |
238.3 |
240.0 |
| C |
CA |
CB |
HA |
121.6 |
120.0 |
| CB |
CA |
C |
O |
51.1 |
100.0 |
| CB |
CA |
C |
OXT |
|
280.0 |
| CG |
CB |
CA |
HB2 |
239.5 |
239.9 |
| CG |
CB |
CA |
HB3 |
120.5 |
120.0 |
| CA |
CB |
CG |
CD |
176.6 |
180.0 |
| CA |
CB |
CG |
HG2 |
296.9 |
300.0 |
| CA |
CB |
CG |
HG3 |
56.3 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
241.1 |
240.0 |
| C |
CA |
N |
H |
300.3 |
296.0 |
| C |
CA |
N |
H2 |
60.3 |
60.0 |
| N |
CA |
C |
CB |
241.2 |
240.0 |
| N |
CA |
C |
HA |
119.5 |
120.0 |
| CB |
CA |
C |
HA |
238.3 |
240.0 |
| C |
CA |
CB |
CG |
55.4 |
175.0 |
| C |
CA |
CB |
HB2 |
175.9 |
295.0 |
| C |
CA |
CB |
HB3 |
294.9 |
55.0 |
| O |
C |
CA |
OXT |
|
180.0 |
| CA |
C |
OXT |
HXT |
|
180.0 |
| HA |
CA |
N |
H |
59.0 |
56.0 |
| HA |
CA |
N |
H2 |
179.0 |
180.0 |
| N |
CA |
HA |
CB |
120.8 |
120.0 |
| N |
CA |
HA |
C |
243.7 |
240.0 |
| CB |
CA |
HA |
C |
122.9 |
120.0 |
| HA |
CA |
CB |
CG |
293.8 |
55.0 |
| HA |
CA |
CB |
HB2 |
54.3 |
175.0 |
| HA |
CA |
CB |
HB3 |
173.3 |
295.0 |
| HA |
CA |
C |
O |
172.7 |
220.0 |
| HA |
CA |
C |
OXT |
|
40.0 |
| CG |
CB |
CA |
C |
55.4 |
175.0 |
| CG |
CB |
CA |
HA |
293.8 |
55.0 |
| CA |
CB |
CG |
HB2 |
120.5 |
120.0 |
| CA |
CB |
CG |
HB3 |
239.5 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
118.9 |
120.0 |
| CD |
CG |
CB |
HG2 |
239.7 |
240.0 |
| CD |
CG |
CB |
HG3 |
120.3 |
120.0 |
| CB |
CG |
CD |
CE |
179.2 |
180.0 |
| CB |
CG |
CD |
HD2 |
299.3 |
300.0 |
| CB |
CG |
CD |
HD3 |
59.1 |
60.0 |
| HG2 |
CG |
CB |
HG3 |
240.6 |
240.0 |
| HB2 |
CB |
CA |
C |
175.9 |
295.0 |
| HB2 |
CB |
CA |
HA |
54.3 |
175.0 |
| CA |
CB |
HB2 |
CG |
236.7 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
118.4 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
241.6 |
240.0 |
| HB2 |
CB |
CG |
CD |
56.1 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
176.4 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
295.8 |
300.0 |
| HB3 |
CB |
CA |
C |
294.9 |
55.0 |
| HB3 |
CB |
CA |
HA |
173.3 |
295.0 |
| CA |
CB |
HB3 |
CG |
123.3 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
241.6 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
118.4 |
120.0 |
| HB3 |
CB |
CG |
CD |
297.2 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
57.5 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
176.8 |
180.0 |
| CD |
CG |
CB |
HB2 |
56.1 |
60.0 |
| CD |
CG |
CB |
HB3 |
297.2 |
300.0 |
| CB |
CG |
CD |
HG2 |
120.3 |
120.0 |
| CB |
CG |
CD |
HG3 |
239.7 |
240.0 |
| HG2 |
CG |
CD |
HG3 |
119.3 |
120.0 |
| CE |
CD |
CG |
HD2 |
239.9 |
240.0 |
| CE |
CD |
CG |
HD3 |
120.1 |
120.0 |
| CG |
CD |
CE |
NZ |
195.3 |
180.0 |
| CG |
CD |
CE |
HE2 |
314.5 |
300.0 |
| CG |
CD |
CE |
HE3 |
76.0 |
60.0 |
| HD2 |
CD |
CG |
HD3 |
240.3 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
176.4 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
57.5 |
60.0 |
| CB |
CG |
HG2 |
CD |
238.1 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
119.0 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
241.0 |
240.0 |
| HG2 |
CG |
CD |
CE |
58.9 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
179.0 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
298.7 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
295.8 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
176.8 |
180.0 |
| CB |
CG |
HG3 |
CD |
122.0 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
241.0 |
240.0 |
| CD |
CG |
HG3 |
HG2 |
119.0 |
120.0 |
| HG3 |
CG |
CD |
CE |
299.5 |
300.0 |
| HG3 |
CG |
CD |
HD2 |
59.7 |
60.0 |
| HG3 |
CG |
CD |
HD3 |
179.4 |
180.0 |
| CE |
CD |
CG |
HG2 |
58.9 |
60.0 |
| CE |
CD |
CG |
HG3 |
299.5 |
300.0 |
| CG |
CD |
CE |
HD2 |
120.1 |
120.1 |
| CG |
CD |
CE |
HD3 |
239.8 |
240.0 |
| HD2 |
CD |
CE |
HD3 |
119.7 |
119.9 |
| NZ |
CE |
CD |
HE2 |
240.7 |
240.0 |
| NZ |
CE |
CD |
HE3 |
119.3 |
120.0 |
| CD |
CE |
NZ |
CX1 |
192.7 |
114.7 |
| HE2 |
CE |
CD |
HE3 |
238.5 |
240.0 |
| HD2 |
CD |
CG |
HG2 |
179.0 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
59.7 |
60.0 |
| CG |
CD |
HD2 |
CE |
239.1 |
240.0 |
| CG |
CD |
HD2 |
HD3 |
119.6 |
120.0 |
| CE |
CD |
HD2 |
HD3 |
240.5 |
240.1 |
| HD2 |
CD |
CE |
NZ |
75.2 |
59.9 |
| HD2 |
CD |
CE |
HE2 |
194.4 |
179.9 |
| HD2 |
CD |
CE |
HE3 |
315.9 |
299.9 |
| HD3 |
CD |
CG |
HG2 |
298.7 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
179.4 |
180.0 |
| CG |
CD |
HD3 |
CE |
120.9 |
120.0 |
| CG |
CD |
HD3 |
HD2 |
240.4 |
239.9 |
| CE |
CD |
HD3 |
HD2 |
119.5 |
120.0 |
| HD3 |
CD |
CE |
NZ |
315.5 |
300.0 |
| HD3 |
CD |
CE |
HE2 |
74.7 |
60.0 |
| HD3 |
CD |
CE |
HE3 |
196.2 |
180.0 |
| NZ |
CE |
CD |
HD2 |
75.2 |
59.9 |
| NZ |
CE |
CD |
HD3 |
315.5 |
300.0 |
| CD |
CE |
NZ |
HE2 |
119.3 |
120.0 |
| CD |
CE |
NZ |
HE3 |
240.7 |
240.0 |
| HE2 |
CE |
NZ |
HE3 |
121.4 |
120.0 |
| CE |
NZ |
CX1 |
C1 |
3.4 |
353.8 |
| CE |
NZ |
CX1 |
CX2 |
183.6 |
173.7 |
| HE2 |
CE |
CD |
HD2 |
194.4 |
179.9 |
| HE2 |
CE |
CD |
HD3 |
74.7 |
60.0 |
| CD |
CE |
HE2 |
NZ |
244.2 |
240.0 |
| CD |
CE |
HE2 |
HE3 |
122.1 |
120.0 |
| NZ |
CE |
HE2 |
HE3 |
237.9 |
240.0 |
| HE2 |
CE |
NZ |
CX1 |
73.4 |
354.6 |
| HE3 |
CE |
CD |
HD2 |
315.9 |
299.9 |
| HE3 |
CE |
CD |
HD3 |
196.2 |
180.0 |
| CD |
CE |
HE3 |
NZ |
115.9 |
120.0 |
| CD |
CE |
HE3 |
HE2 |
237.9 |
240.0 |
| NZ |
CE |
HE3 |
HE2 |
122.0 |
120.0 |
| HE3 |
CE |
NZ |
CX1 |
312.0 |
234.6 |
| CX1 |
NZ |
CE |
HE2 |
73.4 |
354.6 |
| CX1 |
NZ |
CE |
HE3 |
312.0 |
234.6 |
| C1 |
CX1 |
NZ |
CX2 |
179.9 |
180.1 |
| NZ |
CX1 |
C1 |
H11 |
180.0 |
85.1 |
| NZ |
CX1 |
C1 |
H12 |
300.0 |
205.1 |
| NZ |
CX1 |
C1 |
H13 |
60.0 |
325.1 |
| NZ |
CX1 |
CX2 |
O1 |
355.6 |
0.1 |
| NZ |
CX1 |
CX2 |
O2 |
173.4 |
180.0 |
| NZ |
CX1 |
C1 |
CX2 |
180.1 |
179.9 |
| C1 |
CX1 |
CX2 |
O1 |
175.8 |
180.0 |
| C1 |
CX1 |
CX2 |
O2 |
353.6 |
360.0 |
| H11 |
C1 |
CX1 |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
CX1 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
CX1 |
H13 |
240.0 |
240.0 |
| NZ |
CX1 |
CX2 |
C1 |
179.9 |
180.1 |
| CX2 |
CX1 |
C1 |
H11 |
359.9 |
265.2 |
| CX2 |
CX1 |
C1 |
H12 |
119.9 |
25.1 |
| CX2 |
CX1 |
C1 |
H13 |
239.9 |
145.2 |
| O1 |
CX2 |
CX1 |
O2 |
182.2 |
180.0 |
| CX1 |
CX2 |
O1 |
HO1 |
177.7 |
180.0 |
| H11 |
C1 |
CX1 |
CX2 |
359.9 |
265.2 |
| CX1 |
C1 |
H11 |
H12 |
120.0 |
119.9 |
| CX1 |
C1 |
H11 |
H13 |
240.0 |
240.0 |
| H12 |
C1 |
H11 |
H13 |
120.0 |
120.0 |
| H12 |
C1 |
CX1 |
CX2 |
119.9 |
25.1 |
| CX1 |
C1 |
H12 |
H11 |
240.0 |
240.0 |
| CX1 |
C1 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C1 |
H12 |
H13 |
240.0 |
240.0 |
| H13 |
C1 |
CX1 |
CX2 |
239.9 |
145.2 |
| CX1 |
C1 |
H13 |
H11 |
120.0 |
120.0 |
| CX1 |
C1 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C1 |
H13 |
H12 |
120.0 |
120.0 |
| CX1 |
CX2 |
O1 |
O2 |
177.7 |
180.0 |
| CX1 |
CX2 |
O2 |
O1 |
182.3 |
180.0 |
| O2 |
CX2 |
O1 |
HO1 |
360.0 |
360.0 |
| HO1 |
O1 |
CX2 |
O2 |
360.0 |
360.0 |
| O |
C |
CA |
HA |
172.7 |
220.0 |
| CA |
C |
O |
OXT |
|
180.0 |
| O |
C |
OXT |
HXT |
|
0.0 |
| OXT |
C |
CA |
HA |
|
40.0 |
| CA |
C |
OXT |
O |
|
180.0 |