PDB Chemical Component MBP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MBP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
N3 |
1.329 |
1.322 |
| C2 |
N2 |
1.340 |
1.385 |
| C2 |
N1 |
1.367 |
1.326 |
| C4 |
C5 |
1.431 |
1.405 |
| C4 |
N9 |
1.334 |
1.346 |
| C4 |
N3 |
1.353 |
1.335 |
| C5 |
C6 |
1.445 |
1.394 |
| C5 |
N7 |
1.347 |
1.381 |
| C4' |
O4' |
1.253 |
1.208 |
| C4' |
C2' |
1.500 |
1.507 |
| C4' |
C60 |
1.504 |
1.506 |
| C3' |
C2' |
1.515 |
1.530 |
| C3' |
H3'1 |
1.115 |
1.089 |
| C3' |
H3'2 |
1.115 |
1.090 |
| C3' |
H3'3 |
1.115 |
1.090 |
| C2' |
C12 |
1.516 |
1.529 |
| C2' |
H2' |
1.115 |
1.090 |
| C12 |
H121 |
1.115 |
1.089 |
| C12 |
H122 |
1.115 |
1.091 |
| C12 |
H123 |
1.115 |
1.090 |
| N9 |
C8 |
1.325 |
1.303 |
| N2 |
H2N1 |
1.019 |
0.970 |
| N2 |
H2N2 |
1.020 |
0.970 |
| N1 |
C6 |
1.317 |
1.328 |
| C6 |
O6 |
1.329 |
1.355 |
| O6 |
C60 |
1.401 |
1.428 |
| C60 |
H601 |
1.115 |
1.091 |
| C60 |
H602 |
1.115 |
1.089 |
| N7 |
C8 |
1.302 |
1.352 |
| N7 |
H7 |
1.020 |
0.970 |
| C8 |
H8 |
1.103 |
1.081 |
Bond Angles for MBP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N2 |
118.0 |
118.9 |
| N3 |
C2 |
N1 |
121.2 |
122.3 |
| C2 |
N3 |
C4 |
117.6 |
120.5 |
| N2 |
C2 |
N1 |
120.7 |
118.9 |
| C2 |
N2 |
H2N1 |
118.0 |
120.0 |
| C2 |
N2 |
H2N2 |
120.7 |
120.0 |
| C2 |
N1 |
C6 |
124.3 |
121.1 |
| C5 |
C4 |
N9 |
101.4 |
106.8 |
| C5 |
C4 |
N3 |
124.0 |
118.7 |
| C4 |
C5 |
C6 |
114.8 |
118.8 |
| C4 |
C5 |
N7 |
110.3 |
106.1 |
| N9 |
C4 |
N3 |
134.5 |
134.4 |
| C4 |
N9 |
C8 |
111.6 |
109.8 |
| C6 |
C5 |
N7 |
134.7 |
135.2 |
| C5 |
C6 |
N1 |
117.7 |
118.7 |
| C5 |
C6 |
O6 |
120.0 |
120.6 |
| C5 |
N7 |
C8 |
105.7 |
107.1 |
| C5 |
N7 |
H7 |
127.1 |
126.5 |
| O4' |
C4' |
C2' |
124.0 |
120.0 |
| O4' |
C4' |
C60 |
123.9 |
119.9 |
| C2' |
C4' |
C60 |
112.1 |
120.1 |
| C4' |
C2' |
C3' |
110.4 |
109.5 |
| C4' |
C2' |
C12 |
110.9 |
109.5 |
| C4' |
C2' |
H2' |
107.9 |
109.4 |
| C4' |
C60 |
O6 |
111.9 |
109.6 |
| C4' |
C60 |
H601 |
111.3 |
109.4 |
| C4' |
C60 |
H602 |
111.3 |
109.5 |
| C2' |
C3' |
H3'1 |
110.4 |
109.6 |
| C2' |
C3' |
H3'2 |
111.8 |
109.4 |
| C2' |
C3' |
H3'3 |
111.9 |
109.4 |
| C3' |
C2' |
C12 |
111.8 |
109.5 |
| C3' |
C2' |
H2' |
107.9 |
109.4 |
| H3'1 |
C3' |
H3'2 |
111.9 |
109.5 |
| H3'1 |
C3' |
H3'3 |
111.8 |
109.5 |
| H3'2 |
C3' |
H3'3 |
98.6 |
109.5 |
| C12 |
C2' |
H2' |
107.9 |
109.5 |
| C2' |
C12 |
H121 |
110.9 |
109.5 |
| C2' |
C12 |
H122 |
111.7 |
109.4 |
| C2' |
C12 |
H123 |
111.7 |
109.5 |
| H121 |
C12 |
H122 |
111.7 |
109.4 |
| H121 |
C12 |
H123 |
111.7 |
109.5 |
| H122 |
C12 |
H123 |
98.7 |
109.5 |
| N9 |
C8 |
N7 |
110.9 |
110.2 |
| N9 |
C8 |
H8 |
124.6 |
125.0 |
| H2N1 |
N2 |
H2N2 |
121.3 |
120.0 |
| N1 |
C6 |
O6 |
122.0 |
120.7 |
| C6 |
O6 |
C60 |
121.6 |
106.8 |
| O6 |
C60 |
H601 |
111.3 |
109.5 |
| O6 |
C60 |
H602 |
111.4 |
109.5 |
| H601 |
C60 |
H602 |
99.0 |
109.4 |
| C8 |
N7 |
H7 |
127.1 |
126.4 |
| N7 |
C8 |
H8 |
124.5 |
124.9 |
Torsion Angles for MBP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N2 |
C2 |
N3 |
N1 |
182.6 |
180.0 |
| N3 |
C2 |
N2 |
H2N1 |
180.0 |
0.1 |
| N3 |
C2 |
N2 |
H2N2 |
357.4 |
179.9 |
| N3 |
C2 |
N1 |
C6 |
4.5 |
359.9 |
| C5 |
C4 |
N3 |
C2 |
3.8 |
359.7 |
| N9 |
C4 |
N3 |
C2 |
181.2 |
180.0 |
| N3 |
C2 |
N2 |
N1 |
177.4 |
180.0 |
| N2 |
C2 |
N3 |
C4 |
179.6 |
180.0 |
| N2 |
C2 |
N1 |
C6 |
181.8 |
180.0 |
| H2N1 |
N2 |
C2 |
H2N2 |
182.5 |
180.1 |
| N3 |
C2 |
N1 |
N2 |
182.7 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
357.0 |
0.1 |
| N1 |
C2 |
N2 |
H2N1 |
2.6 |
180.0 |
| N1 |
C2 |
N2 |
H2N2 |
180.0 |
359.9 |
| C5 |
C6 |
N1 |
C2 |
354.0 |
0.3 |
| C2 |
N1 |
C6 |
O6 |
179.4 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
3.8 |
359.7 |
| N9 |
C4 |
C5 |
N3 |
181.9 |
179.8 |
| C5 |
C4 |
N9 |
C8 |
358.8 |
0.2 |
| C6 |
C5 |
C4 |
N7 |
175.8 |
180.7 |
| C4 |
C5 |
C6 |
N1 |
6.1 |
359.5 |
| C4 |
C5 |
C6 |
O6 |
180.7 |
179.8 |
| C4 |
C5 |
N7 |
C8 |
359.9 |
0.4 |
| C4 |
C5 |
N7 |
H7 |
179.9 |
180.2 |
| C2 |
N3 |
C4 |
N9 |
181.2 |
180.0 |
| C5 |
C4 |
N9 |
N3 |
177.8 |
180.3 |
| N9 |
C4 |
C5 |
C6 |
176.6 |
180.3 |
| N9 |
C4 |
C5 |
N7 |
0.8 |
359.6 |
| C4 |
N9 |
C8 |
N7 |
1.3 |
360.0 |
| C4 |
N9 |
C8 |
H8 |
181.3 |
180.0 |
| C4 |
N3 |
C2 |
N2 |
179.6 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
357.0 |
0.1 |
| C5 |
C4 |
N3 |
N9 |
182.6 |
179.7 |
| N3 |
C4 |
C5 |
C6 |
354.7 |
0.5 |
| N3 |
C4 |
C5 |
N7 |
178.9 |
179.8 |
| N3 |
C4 |
N9 |
C8 |
181.0 |
180.0 |
| C2 |
N1 |
C6 |
C5 |
354.0 |
0.3 |
| C6 |
C5 |
C4 |
N9 |
176.6 |
180.3 |
| C6 |
C5 |
C4 |
N3 |
354.7 |
0.5 |
| C4 |
C5 |
C6 |
N7 |
185.5 |
179.1 |
| C6 |
C5 |
N7 |
C8 |
185.2 |
179.5 |
| C6 |
C5 |
N7 |
H7 |
5.3 |
359.4 |
| N1 |
C6 |
C5 |
O6 |
185.3 |
179.7 |
| C5 |
C6 |
O6 |
C60 |
171.2 |
179.8 |
| N7 |
C5 |
C4 |
N9 |
0.8 |
359.6 |
| N7 |
C5 |
C4 |
N3 |
178.9 |
179.8 |
| C4 |
C5 |
N7 |
C6 |
174.7 |
180.8 |
| N7 |
C5 |
C6 |
N1 |
180.6 |
180.4 |
| N7 |
C5 |
C6 |
O6 |
355.3 |
0.7 |
| N9 |
C8 |
N7 |
C5 |
359.3 |
359.8 |
| C8 |
N7 |
C5 |
H7 |
180.0 |
180.2 |
| C5 |
N7 |
C8 |
H8 |
179.3 |
179.8 |
| C2' |
C4' |
O4' |
C60 |
179.6 |
180.1 |
| O4' |
C4' |
C2' |
C3' |
72.4 |
329.9 |
| O4' |
C4' |
C2' |
C12 |
308.0 |
90.0 |
| O4' |
C4' |
C2' |
H2' |
190.1 |
210.0 |
| O4' |
C4' |
C60 |
O6 |
13.7 |
0.0 |
| O4' |
C4' |
C60 |
H601 |
248.4 |
120.1 |
| O4' |
C4' |
C60 |
H602 |
139.0 |
239.9 |
| O4' |
C4' |
C2' |
C60 |
180.4 |
179.9 |
| C2' |
C4' |
C60 |
O6 |
194.1 |
180.0 |
| C2' |
C4' |
C60 |
H601 |
68.8 |
300.0 |
| C2' |
C4' |
C60 |
H602 |
319.4 |
59.9 |
| C4' |
C2' |
C3' |
H3'1 |
180.0 |
180.0 |
| C4' |
C2' |
C3' |
H3'2 |
54.7 |
300.1 |
| C4' |
C2' |
C3' |
H3'3 |
305.3 |
60.0 |
| C3' |
C2' |
C4' |
C12 |
124.4 |
239.9 |
| C3' |
C2' |
C4' |
H2' |
242.3 |
119.9 |
| C12 |
C2' |
C4' |
H2' |
117.9 |
240.0 |
| C4' |
C2' |
C12 |
H121 |
180.0 |
300.0 |
| C4' |
C2' |
C12 |
H122 |
54.8 |
59.9 |
| C4' |
C2' |
C12 |
H123 |
305.3 |
180.0 |
| O4' |
C4' |
C60 |
C2' |
179.6 |
180.1 |
| C60 |
C4' |
C2' |
C3' |
252.1 |
150.0 |
| C60 |
C4' |
C2' |
C12 |
127.6 |
270.1 |
| C60 |
C4' |
C2' |
H2' |
9.7 |
30.0 |
| C6 |
O6 |
C60 |
C4' |
180.2 |
180.0 |
| O6 |
C60 |
C4' |
H601 |
125.3 |
240.0 |
| O6 |
C60 |
C4' |
H602 |
234.7 |
120.1 |
| H601 |
C60 |
C4' |
H602 |
109.4 |
240.1 |
| C3' |
C2' |
C4' |
C60 |
252.1 |
150.0 |
| C4' |
C2' |
C3' |
C12 |
236.1 |
120.1 |
| C4' |
C2' |
C3' |
H2' |
117.6 |
240.1 |
| H3'1 |
C3' |
C2' |
H3'2 |
125.3 |
240.0 |
| H3'1 |
C3' |
C2' |
H3'3 |
234.8 |
120.0 |
| H3'2 |
C3' |
C2' |
H3'3 |
109.5 |
240.0 |
| C12 |
C2' |
C3' |
H2' |
241.6 |
120.0 |
| C3' |
C2' |
C12 |
H121 |
56.4 |
60.1 |
| C3' |
C2' |
C12 |
H122 |
291.1 |
180.0 |
| C3' |
C2' |
C12 |
H123 |
181.6 |
300.1 |
| C2' |
C3' |
H3'1 |
H3'2 |
234.8 |
120.0 |
| C2' |
C3' |
H3'1 |
H3'3 |
125.3 |
240.0 |
| H3'1 |
C3' |
C2' |
C12 |
303.9 |
59.9 |
| H3'1 |
C3' |
C2' |
H2' |
62.4 |
299.9 |
| H3'2 |
C3' |
H3'1 |
H3'3 |
250.5 |
120.0 |
| C2' |
C3' |
H3'2 |
H3'1 |
124.4 |
239.9 |
| C2' |
C3' |
H3'2 |
H3'3 |
242.2 |
119.9 |
| H3'2 |
C3' |
C2' |
C12 |
178.7 |
180.0 |
| H3'2 |
C3' |
C2' |
H2' |
297.1 |
60.0 |
| H3'1 |
C3' |
H3'2 |
H3'3 |
117.8 |
240.0 |
| C2' |
C3' |
H3'3 |
H3'1 |
235.6 |
120.0 |
| C2' |
C3' |
H3'3 |
H3'2 |
117.8 |
240.1 |
| H3'3 |
C3' |
C2' |
C12 |
69.2 |
299.9 |
| H3'3 |
C3' |
C2' |
H2' |
187.6 |
180.0 |
| H3'1 |
C3' |
H3'3 |
H3'2 |
242.2 |
120.0 |
| C12 |
C2' |
C4' |
C60 |
127.6 |
270.1 |
| C4' |
C2' |
C12 |
C3' |
123.6 |
239.9 |
| C4' |
C2' |
C12 |
H2' |
242.1 |
119.9 |
| C12 |
C2' |
C3' |
H3'1 |
303.9 |
59.9 |
| C12 |
C2' |
C3' |
H3'2 |
178.7 |
180.0 |
| C12 |
C2' |
C3' |
H3'3 |
69.2 |
299.9 |
| C3' |
C2' |
C12 |
H2' |
118.5 |
240.0 |
| H121 |
C12 |
C2' |
H122 |
125.2 |
240.1 |
| H121 |
C12 |
C2' |
H123 |
234.7 |
120.0 |
| H122 |
C12 |
C2' |
H123 |
109.5 |
240.0 |
| H2' |
C2' |
C4' |
C60 |
9.7 |
30.0 |
| C4' |
C2' |
H2' |
C3' |
240.7 |
120.0 |
| C4' |
C2' |
H2' |
C12 |
119.8 |
240.0 |
| H2' |
C2' |
C3' |
H3'1 |
62.4 |
299.9 |
| H2' |
C2' |
C3' |
H3'2 |
297.1 |
60.0 |
| H2' |
C2' |
C3' |
H3'3 |
187.6 |
180.0 |
| C3' |
C2' |
H2' |
C12 |
239.1 |
120.0 |
| H2' |
C2' |
C12 |
H121 |
297.9 |
180.1 |
| H2' |
C2' |
C12 |
H122 |
172.7 |
300.0 |
| H2' |
C2' |
C12 |
H123 |
63.2 |
60.0 |
| H121 |
C12 |
C2' |
H2' |
297.9 |
180.1 |
| C2' |
C12 |
H121 |
H122 |
234.8 |
119.9 |
| C2' |
C12 |
H121 |
H123 |
125.3 |
240.0 |
| H122 |
C12 |
H121 |
H123 |
250.5 |
120.0 |
| H122 |
C12 |
C2' |
H2' |
172.7 |
300.0 |
| C2' |
C12 |
H122 |
H121 |
124.8 |
240.0 |
| C2' |
C12 |
H122 |
H123 |
242.4 |
120.0 |
| H121 |
C12 |
H122 |
H123 |
117.6 |
240.0 |
| H123 |
C12 |
C2' |
H2' |
63.2 |
60.0 |
| C2' |
C12 |
H123 |
H121 |
235.2 |
120.0 |
| C2' |
C12 |
H123 |
H122 |
117.6 |
240.0 |
| H121 |
C12 |
H123 |
H122 |
242.4 |
120.0 |
| C8 |
N9 |
C4 |
N3 |
181.0 |
180.0 |
| C5 |
N7 |
C8 |
N9 |
359.3 |
359.8 |
| N9 |
C8 |
N7 |
H7 |
179.3 |
179.9 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| H2N1 |
N2 |
C2 |
N1 |
2.6 |
180.0 |
| C2 |
N2 |
H2N1 |
H2N2 |
177.4 |
179.9 |
| H2N2 |
N2 |
C2 |
N1 |
180.0 |
359.9 |
| C2 |
N2 |
H2N2 |
H2N1 |
182.6 |
180.1 |
| N1 |
C6 |
C5 |
N7 |
180.6 |
180.4 |
| C5 |
C6 |
N1 |
O6 |
174.6 |
180.3 |
| N1 |
C6 |
O6 |
C60 |
345.7 |
0.1 |
| O6 |
C6 |
C5 |
N7 |
355.3 |
0.7 |
| C5 |
C6 |
O6 |
N1 |
185.6 |
179.7 |
| C4' |
C60 |
O6 |
C6 |
180.2 |
180.0 |
| C6 |
O6 |
C60 |
H601 |
305.5 |
60.0 |
| C6 |
O6 |
C60 |
H602 |
54.9 |
300.0 |
| C4' |
C60 |
O6 |
H601 |
234.7 |
120.0 |
| C4' |
C60 |
O6 |
H602 |
125.3 |
239.9 |
| H601 |
C60 |
O6 |
H602 |
250.5 |
119.9 |
| C4' |
C60 |
H601 |
O6 |
125.6 |
239.9 |
| C4' |
C60 |
H601 |
H602 |
242.8 |
119.9 |
| O6 |
C60 |
H601 |
H602 |
117.2 |
240.0 |
| C4' |
C60 |
H602 |
O6 |
234.4 |
120.1 |
| C4' |
C60 |
H602 |
H601 |
117.2 |
240.1 |
| O6 |
C60 |
H602 |
H601 |
242.8 |
120.0 |
| C5 |
N7 |
C8 |
H7 |
180.0 |
179.8 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| C5 |
N7 |
H7 |
C8 |
180.0 |
180.2 |
| H7 |
N7 |
C8 |
H8 |
359.3 |
359.9 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
180.0 |
| H8 |
C8 |
N7 |
H7 |
359.3 |
359.9 |