PDB Chemical Component MB9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MB9

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1K C1I 1.529 1.530
C1K C1W 1.501 1.534
C1I N1M 1.497 1.469
N1M C1J 1.470 1.469
C1J C1L 1.524 1.530
C1L C1W 1.543 1.533
C1W N1N 1.482 1.461
C1W C1U 1.519 1.532
N1N C1O 1.381 1.352
C1O O1C 1.228 1.216
C1O C1Q 1.391 1.473
C1Q N1V 1.336 1.372
C1Q C1R 1.411 1.375
N1V C1A 1.477 1.465
N1V C1T 1.336 1.365
C1T C1H 1.398 1.394
C1T C1S 1.404 1.423
C1H C1P 1.391 1.385
C1P CL1D 1.733 1.735
C1P C1F 1.400 1.388
C1F C1G 1.388 1.371
C1G C1S 1.390 1.404
C1S C1R 1.398 1.393
C1R C1U 1.532 1.507
C1U C1E 1.473 1.472
C1E N1B 1.131 1.136
C1K H1K 1.100 1.091
C1K H1KA 1.100 1.090
C1I H1I 1.100 1.090
C1I H1IA 1.100 1.090
N1M HN1M 1.000 1.009
C1J H1J 1.099 1.090
C1J H1JA 1.100 1.090
C1L H1L 1.100 1.090
C1L H1LA 1.100 1.089
N1N HN1N 1.000 0.970
C1A H1A 1.100 1.090
C1A H1AA 1.100 1.090
C1A H1AB 1.100 1.090
C1H H1H 1.080 1.080
C1F H1F 1.080 1.079
C1G H1G 1.080 1.080
C1U H1U 1.100 1.090

Bond Angles for MB9

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1I C1K C1W 114.0 109.3
C1K C1I N1M 113.4 109.5
C1I C1K H1K 108.0 109.5
C1I C1K H1KA 107.0 109.6
C1K C1I H1I 108.2 109.5
C1K C1I H1IA 107.3 109.5
C1K C1W C1L 110.9 108.7
C1K C1W N1N 107.6 109.1
C1K C1W C1U 111.7 108.9
C1W C1K H1K 108.0 109.5
C1W C1K H1KA 106.9 109.5
C1I N1M C1J 114.0 111.1
N1M C1I H1I 108.2 109.4
N1M C1I H1IA 107.3 109.4
C1I N1M HN1M 108.0 111.0
N1M C1J C1L 111.2 109.6
C1J N1M HN1M 108.0 111.0
N1M C1J H1J 108.9 109.4
N1M C1J H1JA 108.5 109.4
C1J C1L C1W 111.8 109.2
C1L C1J H1J 108.9 109.5
C1L C1J H1JA 108.5 109.5
C1J C1L H1L 108.7 109.5
C1J C1L H1LA 108.1 109.5
C1L C1W N1N 104.9 109.2
C1L C1W C1U 108.9 109.0
C1W C1L H1L 108.7 109.5
C1W C1L H1LA 108.1 109.5
N1N C1W C1U 112.8 111.9
C1W N1N C1O 119.9 122.4
C1W N1N HN1N 120.0 118.8
C1W C1U C1R 109.4 109.0
C1W C1U C1E 111.6 109.5
C1W C1U H1U 108.0 109.5
N1N C1O O1C 116.6 121.4
N1N C1O C1Q 120.3 117.2
C1O N1N HN1N 120.1 118.8
O1C C1O C1Q 121.4 121.4
C1O C1Q N1V 132.8 130.2
C1O C1Q C1R 120.0 120.4
N1V C1Q C1R 107.2 109.4
C1Q N1V C1A 124.4 125.7
C1Q N1V C1T 111.6 108.5
C1Q C1R C1S 106.8 107.6
C1Q C1R C1U 122.1 121.5
C1A N1V C1T 123.9 125.8
N1V C1A H1A 109.5 109.5
N1V C1A H1AA 109.4 109.5
N1V C1A H1AB 109.5 109.5
N1V C1T C1H 132.3 131.6
N1V C1T C1S 107.7 107.7
C1H C1T C1S 120.0 120.8
C1T C1H C1P 118.2 117.0
C1T C1H H1H 120.9 121.5
C1T C1S C1G 121.0 120.8
C1T C1S C1R 106.7 106.8
C1H C1P CL1D 118.1 119.0
C1H C1P C1F 121.9 122.1
C1P C1H H1H 120.9 121.5
CL1D C1P C1F 120.0 118.9
C1P C1F C1G 119.5 122.2
C1P C1F H1F 120.2 118.9
C1F C1G C1S 119.3 117.1
C1G C1F H1F 120.2 118.9
C1F C1G H1G 120.4 121.4
C1G C1S C1R 132.3 132.4
C1S C1G H1G 120.4 121.5
C1S C1R C1U 131.0 130.9
C1R C1U C1E 109.2 109.6
C1R C1U H1U 110.4 109.6
C1U C1E N1B 177.5 180.0
C1E C1U H1U 108.1 109.6
H1K C1K H1KA 113.1 109.5
H1I C1I H1IA 112.6 109.5
H1J C1J H1JA 110.8 109.4
H1L C1L H1LA 111.3 109.6
H1A C1A H1AA 109.5 109.5
H1A C1A H1AB 109.4 109.4
H1AA C1A H1AB 109.5 109.5

Torsion Angles for MB9

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1I C1K C1W C1L 311.3 301.8
C1I C1K C1W N1N 65.4 60.9
C1I C1K C1W C1U 189.7 183.3
C1W C1K C1I H1K 240.0 240.1
C1W C1K C1I H1KA 118.0 120.0
C1K C1I N1M C1J 311.1 298.4
N1M C1I C1K H1I 240.0 240.0
N1M C1I C1K H1IA 118.3 120.0
C1K C1I N1M HN1M 71.1 62.4
H1K C1K C1I H1KA 237.9 239.9
H1I C1I C1K H1IA 238.3 239.9
C1W C1K C1I N1M 46.6 59.5
C1I C1K C1W H1K 120.0 119.9
C1I C1K C1W H1KA 242.0 240.0
C1W C1K C1I H1I 166.5 179.5
C1W C1K C1I H1IA 288.3 299.6
C1J C1L C1W C1K 53.6 58.1
C1L C1W C1K N1N 245.9 241.0
C1L C1W C1K C1U 121.6 118.6
C1K C1W C1L H1L 293.5 298.2
C1K C1W C1L H1LA 172.5 178.0
N1N C1W C1K C1U 235.7 237.6
C1K C1W N1N C1O 166.3 161.2
C1K C1W N1N HN1N 346.3 341.3
C1K C1W C1U C1R 196.2 192.6
C1K C1W C1U C1E 317.3 312.4
C1K C1W C1U H1U 76.0 72.7
H1K C1K C1W H1KA 122.0 120.1
N1M C1I C1K C1W 46.6 59.5
N1M C1I C1K H1K 166.5 179.5
N1M C1I C1K H1KA 288.6 299.6
C1K C1I N1M H1I 120.0 120.0
C1K C1I N1M H1IA 241.7 240.0
C1I N1M C1J C1L 53.8 61.6
C1J N1M C1I HN1M 240.0 235.9
C1I N1M C1J H1J 173.8 181.7
C1I N1M C1J H1JA 294.6 301.5
H1I C1I N1M H1IA 121.7 120.0
C1J N1M C1I H1I 191.1 178.3
C1J N1M C1I H1IA 69.3 58.4
C1I N1M C1J HN1M 120.0 124.0
N1M C1J C1L C1W 303.9 300.6
C1L C1J N1M H1J 240.0 239.9
C1L C1J N1M H1JA 119.3 120.0
N1M C1J C1L H1L 63.9 60.4
N1M C1J C1L H1LA 184.9 180.7
H1J C1J N1M H1JA 239.3 240.1
C1K C1W C1L C1J 53.6 58.1
C1L C1J N1M HN1M 293.8 297.5
N1M C1J C1L H1J 120.0 120.0
N1M C1J C1L H1JA 240.7 240.0
C1J C1L C1W N1N 297.8 299.1
C1J C1L C1W C1U 176.8 176.6
C1W C1L C1J H1L 240.0 240.1
C1W C1L C1J H1LA 119.0 119.9
H1J C1J C1L H1JA 120.7 120.0
H1L C1L C1J H1LA 239.0 239.8
C1K C1W C1L N1N 115.8 119.0
C1K C1W C1L C1U 236.8 241.5
C1L C1W C1K H1K 191.3 181.9
C1L C1W C1K H1KA 69.3 61.8
C1W C1L C1J H1J 183.8 180.5
C1W C1L C1J H1JA 63.1 60.6
C1J C1L C1W H1L 120.0 119.9
C1J C1L C1W H1LA 241.0 240.1
N1N C1W C1L C1U 121.0 122.5
C1L C1W N1N C1O 284.4 279.9
C1L C1W N1N HN1N 104.4 100.0
C1L C1W C1U C1R 73.5 74.1
C1L C1W C1U C1E 194.5 194.0
C1L C1W C1U H1U 313.3 314.3
H1L C1L C1W H1LA 121.0 120.2
C1K C1W N1N C1L 241.9 241.3
C1K C1W N1N C1U 123.6 120.5
N1N C1W C1K H1K 305.5 300.9
N1N C1W C1K H1KA 183.4 180.9
C1L C1W N1N C1U 241.7 239.3
N1N C1W C1L H1L 177.7 179.2
N1N C1W C1L H1LA 56.7 59.0
N1N C1W C1U C1R 317.6 313.3
N1N C1W C1U C1E 78.6 73.1
N1N C1W C1U H1U 197.3 193.4
C1W N1N C1O O1C 177.3 169.3
C1W N1N C1O C1Q 342.9 349.3
C1O N1N C1W HN1N 180.0 179.9
C1K C1W C1U C1L 122.7 118.4
C1K C1W C1U N1N 238.7 239.3
C1U C1W C1K H1K 69.8 63.3
C1U C1W C1K H1KA 307.7 303.3
C1L C1W C1U N1N 116.0 120.9
C1U C1W C1L H1L 56.8 56.7
C1U C1W C1L H1LA 295.8 296.5
C1U C1W N1N C1O 42.7 40.7
C1U C1W N1N HN1N 222.7 220.7
C1Q C1R C1U C1W 23.2 29.5
C1S C1R C1U C1W 201.9 208.9
C1R C1U C1W C1E 239.0 240.1
C1R C1U C1W H1U 120.2 119.8
C1W C1U C1E N1B 292.7 156.9
C1E C1U C1W H1U 241.3 239.7
C1O N1N C1W C1U 42.7 40.7
C1W N1N C1O HN1N 180.0 180.1
O1C C1O N1N C1Q 194.4 180.0
N1N C1O C1Q N1V 177.7 170.5
N1N C1O C1Q C1R 354.3 349.3
N1N C1O O1C C1Q 165.4 180.0
O1C C1O N1N HN1N 357.3 349.2
O1C C1O C1Q N1V 342.5 350.5
O1C C1O C1Q C1R 159.1 169.3
N1N C1O C1Q O1C 195.1 180.0
C1Q C1O N1N HN1N 162.8 169.2
N1V C1Q C1O C1R 183.4 181.2
C1O C1Q N1V C1A 354.9 0.2
C1O C1Q N1V C1T 177.2 180.1
C1O C1Q C1R C1S 182.4 179.7
C1O C1Q C1R C1U 1.3 359.2
C1O C1Q N1V C1R 176.9 178.9
N1V C1Q C1R C1S 359.8 358.7
N1V C1Q C1R C1U 178.7 178.2
C1A N1V C1Q C1T 177.7 180.1
C1Q N1V C1A H1A 139.4 90.0
C1Q N1V C1A H1AA 259.4 210.0
C1Q N1V C1A H1AB 19.5 330.0
C1Q N1V C1T C1H 177.5 179.5
C1Q N1V C1T C1S 359.7 359.4
C1W C1U C1R C1Q 23.2 29.5
C1O C1Q C1R N1V 182.6 180.9
C1R C1Q N1V C1A 178.0 181.2
C1R C1Q N1V C1T 0.3 1.2
C1T C1S C1R C1Q 0.1 0.8
C1G C1S C1R C1Q 179.5 180.8
C1S C1R C1Q C1U 181.1 180.5
C1Q C1R C1U C1E 260.8 269.7
C1Q C1R C1U H1U 141.9 149.4
C1A N1V C1Q C1R 178.0 181.2
C1Q N1V C1A C1T 182.6 179.9
C1A N1V C1T C1H 359.8 359.4
C1A N1V C1T C1S 182.1 179.3
H1A C1A N1V H1AA 240.0 240.0
H1A C1A N1V H1AB 120.0 120.0
H1AA C1A N1V H1AB 240.0 240.0
C1T N1V C1Q C1R 0.3 1.2
C1Q N1V C1T C1A 177.7 180.1
C1T N1V C1A H1A 316.8 270.1
C1T N1V C1A H1AA 76.8 30.1
C1T N1V C1A H1AB 196.8 150.1
C1H C1T N1V C1S 177.8 180.1
N1V C1T C1H C1P 179.6 180.0
N1V C1T C1H H1H 359.5 360.0
N1V C1T C1S C1G 180.6 179.9
N1V C1T C1S C1R 0.1 359.9
N1V C1T C1H C1S 182.5 179.9
C1H C1T C1S C1G 2.5 359.8
C1H C1T C1S C1R 182.0 179.8
C1T C1H C1P CL1D 181.2 180.0
C1T C1H C1P C1F 1.0 359.9
C1P C1H C1T H1H 180.0 180.1
C1Q C1R C1S C1T 0.1 0.8
N1V C1T C1S C1H 178.1 180.1
C1S C1T C1H C1P 357.1 0.1
C1S C1T C1H H1H 177.1 180.1
C1F C1G C1S C1T 359.9 0.1
C1G C1S C1T C1R 180.5 180.0
C1T C1S C1G H1G 179.9 180.1
C1T C1S C1R C1U 181.3 181.4
C1P C1H C1T C1S 357.1 0.1
C1T C1H C1P H1H 180.0 179.9
CL1D C1P C1H C1F 180.2 180.0
C1H C1P C1F C1G 1.4 0.0
C1H C1P C1F H1F 181.4 179.9
C1H C1P CL1D C1F 179.8 180.0
CL1D C1P C1H H1H 1.2 0.0
CL1D C1P C1F C1G 181.2 180.0
CL1D C1P C1F H1F 1.2 359.9
C1H C1P C1F CL1D 180.2 180.0
C1F C1P C1H H1H 181.0 180.0
C1P C1F C1G C1S 358.2 359.9
C1G C1F C1P H1F 180.0 180.1
C1P C1F C1G H1G 178.2 179.9
C1T C1S C1G C1F 359.9 0.1
C1P C1F C1G H1F 180.0 179.9
C1F C1G C1S C1R 180.6 180.2
C1S C1G C1F H1G 180.0 180.0
C1Q C1R C1S C1G 179.5 180.8
C1T C1S C1G C1R 179.4 180.0
C1S C1G C1F H1F 178.2 180.0
C1F C1G C1S H1G 180.0 180.0
C1G C1S C1R C1U 0.7 1.4
C1W C1U C1R C1S 201.9 208.9
C1Q C1R C1S C1U 178.8 179.4
C1T C1S C1R C1G 180.6 180.0
C1R C1S C1G H1G 0.5 0.2
C1S C1R C1U C1E 79.4 89.0
C1S C1R C1U H1U 320.6 328.7
C1W C1U C1R C1E 122.5 119.9
C1W C1U C1R H1U 241.3 240.2
C1Q C1R C1U C1S 181.3 180.7
C1R C1U C1E N1B 53.8 276.4
C1E C1U C1R H1U 118.8 120.3
C1W C1U C1E C1R 238.9 240.5
C1W C1U C1E H1U 118.6 120.2
C1R C1U C1E H1U 239.8 239.7
N1B C1E C1U H1U 174.1 36.6
C1I C1K H1K C1W 236.3 240.2
H1K C1K C1I N1M 166.5 179.5
C1I C1K H1K H1KA 118.2 120.2
H1K C1K C1I H1I 286.5 299.4
H1K C1K C1I H1IA 48.2 59.5
H1K C1K C1W C1L 191.3 181.9
H1K C1K C1W N1N 305.5 300.9
H1K C1K C1W C1U 69.8 63.3
C1W C1K H1K H1KA 241.9 239.9
C1I C1K H1KA C1W 122.5 119.8
H1KA C1K C1I N1M 288.6 299.6
C1I C1K H1KA H1K 241.2 239.9
H1KA C1K C1I H1I 48.6 59.6
H1KA C1K C1I H1IA 170.3 179.6
H1KA C1K C1W C1L 69.3 61.8
H1KA C1K C1W N1N 183.4 180.9
H1KA C1K C1W C1U 307.7 303.3
C1W C1K H1KA H1K 118.7 120.0
H1I C1I C1K C1W 166.5 179.5
C1K C1I H1I N1M 236.8 240.0
H1I C1I C1K H1K 286.5 299.4
H1I C1I C1K H1KA 48.6 59.6
C1K C1I H1I H1IA 118.4 120.0
H1I C1I N1M C1J 191.1 178.3
N1M C1I H1I H1IA 241.6 240.1
H1I C1I N1M HN1M 311.1 302.4
H1IA C1I C1K C1W 288.3 299.6
C1K C1I H1IA N1M 122.2 120.0
H1IA C1I C1K H1K 48.2 59.5
H1IA C1I C1K H1KA 170.3 179.6
C1K C1I H1IA H1I 241.1 239.9
H1IA C1I N1M C1J 69.3 58.4
N1M C1I H1IA H1I 118.9 119.9
H1IA C1I N1M HN1M 189.3 182.4
C1I N1M HN1M C1J 236.3 235.9
HN1M N1M C1I H1I 311.1 302.4
HN1M N1M C1I H1IA 189.3 182.4
HN1M N1M C1J C1L 293.8 297.5
HN1M N1M C1J H1J 53.8 57.6
HN1M N1M C1J H1JA 174.5 177.5
N1M C1J H1J C1L 238.6 239.9
H1J C1J N1M HN1M 53.8 57.6
N1M C1J H1J H1JA 119.3 119.9
H1J C1J C1L C1W 183.8 180.5
C1L C1J H1J H1JA 240.8 240.0
H1J C1J C1L H1L 303.9 300.4
H1J C1J C1L H1LA 64.9 60.6
N1M C1J H1JA C1L 121.0 120.1
H1JA C1J N1M HN1M 174.5 177.5
N1M C1J H1JA H1J 240.5 240.1
H1JA C1J C1L C1W 63.1 60.6
C1L C1J H1JA H1J 119.5 120.0
H1JA C1J C1L H1L 183.1 180.4
H1JA C1J C1L H1LA 304.2 300.7
C1J C1L H1L C1W 238.1 240.3
H1L C1L C1J H1J 303.9 300.4
H1L C1L C1J H1JA 183.1 180.4
C1J C1L H1L H1LA 119.0 120.1
H1L C1L C1W N1N 177.7 179.2
H1L C1L C1W C1U 56.8 56.7
C1W C1L H1L H1LA 241.0 239.9
C1J C1L H1LA C1W 121.3 119.7
H1LA C1L C1J H1J 64.9 60.6
H1LA C1L C1J H1JA 304.2 300.7
C1J C1L H1LA H1L 240.6 239.9
H1LA C1L C1W N1N 56.7 59.0
H1LA C1L C1W C1U 295.8 296.5
C1W C1L H1LA H1L 119.3 120.1
HN1N N1N C1W C1U 222.7 220.7
C1W N1N HN1N C1O 180.0 179.9
HN1N N1N C1O O1C 357.3 349.2
HN1N N1N C1O C1Q 162.8 169.2
H1A C1A N1V C1T 316.8 270.1
N1V C1A H1A H1AA 120.0 120.0
N1V C1A H1A H1AB 240.0 240.0
H1AA C1A H1A H1AB 120.0 120.0
H1AA C1A N1V C1T 76.8 30.1
N1V C1A H1AA H1A 240.0 240.0
N1V C1A H1AA H1AB 120.0 120.0
H1A C1A H1AA H1AB 240.0 240.1
H1AB C1A N1V C1T 196.8 150.1
N1V C1A H1AB H1A 120.0 120.0
N1V C1A H1AB H1AA 240.0 240.0
H1A C1A H1AB H1AA 120.0 120.0
H1H C1H C1T C1S 177.1 180.1
C1T C1H H1H C1P 180.0 180.1
H1H C1H C1P CL1D 1.2 0.0
H1H C1H C1P C1F 181.0 180.0
C1P C1F H1F C1G 180.0 180.1
H1F C1F C1G C1S 178.2 180.0
H1F C1F C1G H1G 358.2 0.0
C1F C1G H1G C1S 180.0 180.0
H1G C1G C1F H1F 358.2 0.0
H1G C1G C1S C1R 0.5 0.2
C1W C1U H1U C1R 119.6 119.5
C1W C1U H1U C1E 239.1 239.8
C1R C1U H1U C1E 119.5 120.3
H1U C1U C1E N1B 174.1 36.6