PDB Chemical Component MB7
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MB7
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O14 |
S13 |
1.433 |
1.421 |
| O15 |
S13 |
1.432 |
1.421 |
| S13 |
C16 |
1.589 |
1.763 |
| S13 |
N12 |
1.601 |
1.655 |
| C17 |
C16 |
1.394 |
1.382 |
| C17 |
C18 |
1.395 |
1.382 |
| C16 |
C22 |
1.398 |
1.382 |
| C18 |
C19 |
1.392 |
1.382 |
| N12 |
C10 |
1.335 |
1.348 |
| O11 |
C10 |
1.211 |
1.216 |
| C10 |
N9 |
1.334 |
1.347 |
| C22 |
C21 |
1.391 |
1.382 |
| C19 |
C21 |
1.394 |
1.383 |
| C19 |
C20 |
1.292 |
1.507 |
| N9 |
C8 |
1.368 |
1.399 |
| C23 |
C8 |
1.409 |
1.388 |
| C23 |
N24 |
1.371 |
1.319 |
| C8 |
C7 |
1.384 |
1.394 |
| N24 |
C5 |
1.377 |
1.318 |
| C7 |
C6 |
1.376 |
1.384 |
| C5 |
C6 |
1.378 |
1.383 |
| C5 |
S1 |
1.627 |
1.761 |
| N4 |
S1 |
1.604 |
1.656 |
| O2 |
S1 |
1.437 |
1.421 |
| S1 |
O3 |
1.433 |
1.421 |
| C20 |
H1 |
1.100 |
1.090 |
| C20 |
H2 |
1.100 |
1.090 |
| C20 |
H3 |
1.100 |
1.089 |
| C18 |
H4 |
1.080 |
1.080 |
| C17 |
H5 |
1.080 |
1.080 |
| C21 |
H6 |
1.080 |
1.080 |
| C22 |
H7 |
1.080 |
1.080 |
| N12 |
H8 |
1.000 |
0.971 |
| N9 |
H9 |
1.000 |
0.970 |
| C7 |
H10 |
1.080 |
1.080 |
| C6 |
H11 |
1.080 |
1.080 |
| C23 |
H12 |
1.080 |
1.080 |
| N4 |
H13 |
1.000 |
0.970 |
| N4 |
H14 |
1.000 |
0.970 |
Bond Angles for MB7
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
S13 |
N12 |
112.4 |
106.4 |
| O15 |
S13 |
N12 |
104.6 |
106.5 |
| S13 |
N12 |
C10 |
124.2 |
120.1 |
| S13 |
N12 |
H8 |
117.9 |
120.0 |
| C17 |
C16 |
C22 |
119.8 |
120.0 |
| C16 |
C17 |
H5 |
120.1 |
120.0 |
| C17 |
C18 |
H4 |
119.7 |
120.0 |
| C16 |
C22 |
H7 |
119.9 |
120.0 |
| C18 |
C19 |
C21 |
119.7 |
120.0 |
| N12 |
C10 |
N9 |
113.3 |
120.0 |
| C10 |
N12 |
H8 |
117.9 |
119.9 |
| O11 |
C10 |
N9 |
124.1 |
120.0 |
| C10 |
N9 |
C8 |
128.9 |
120.0 |
| C10 |
N9 |
H9 |
115.5 |
120.0 |
| C22 |
C21 |
H6 |
120.0 |
120.0 |
| C19 |
C21 |
H6 |
120.0 |
120.0 |
| C19 |
C20 |
H1 |
109.5 |
109.5 |
| C19 |
C20 |
H2 |
109.5 |
109.5 |
| C19 |
C20 |
H3 |
109.4 |
109.5 |
| N9 |
C8 |
C7 |
112.0 |
120.5 |
| C8 |
N9 |
H9 |
115.6 |
119.9 |
| C23 |
N24 |
C5 |
121.4 |
121.8 |
| N24 |
C23 |
H12 |
119.9 |
119.7 |
| C8 |
C7 |
C6 |
120.5 |
118.4 |
| C8 |
C7 |
H10 |
119.7 |
120.8 |
| N24 |
C5 |
S1 |
126.5 |
119.5 |
| C6 |
C7 |
H10 |
119.8 |
120.9 |
| C7 |
C6 |
H11 |
119.3 |
120.4 |
| C5 |
C6 |
H11 |
119.3 |
120.4 |
| C5 |
S1 |
O3 |
109.6 |
106.4 |
| O2 |
S1 |
O3 |
111.6 |
123.1 |
| H1 |
C20 |
H2 |
109.5 |
109.4 |
| H1 |
C20 |
H3 |
109.4 |
109.5 |
| H2 |
C20 |
H3 |
109.5 |
109.5 |
| H13 |
N4 |
H14 |
109.5 |
120.0 |
Torsion Angles for MB7
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
S13 |
O14 |
N12 |
115.6 |
123.0 |
| O14 |
S13 |
N12 |
C10 |
313.8 |
311.5 |
| O14 |
S13 |
N12 |
H8 |
133.8 |
131.5 |
| O14 |
S13 |
O15 |
N12 |
239.4 |
237.0 |
| O15 |
S13 |
N12 |
C10 |
195.4 |
178.5 |
| O15 |
S13 |
N12 |
H8 |
15.4 |
358.5 |
| S13 |
C16 |
C17 |
H5 |
0.5 |
0.0 |
| S13 |
C16 |
C22 |
H7 |
359.7 |
0.2 |
| S13 |
N12 |
C10 |
N9 |
181.8 |
180.0 |
| C10 |
N12 |
S13 |
H8 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H4 |
179.8 |
180.0 |
| C17 |
C16 |
C22 |
H7 |
180.2 |
180.0 |
| C17 |
C18 |
C19 |
C21 |
0.3 |
0.1 |
| C22 |
C16 |
C17 |
H5 |
179.9 |
180.3 |
| C16 |
C22 |
C21 |
H6 |
179.9 |
180.5 |
| C18 |
C19 |
C21 |
H6 |
179.9 |
179.7 |
| C18 |
C19 |
C20 |
H1 |
87.6 |
270.3 |
| C18 |
C19 |
C20 |
H2 |
207.6 |
30.3 |
| C18 |
C19 |
C20 |
H3 |
327.6 |
150.3 |
| S13 |
N12 |
C10 |
H8 |
180.0 |
180.0 |
| O11 |
C10 |
N12 |
N9 |
181.4 |
180.1 |
| N12 |
C10 |
N9 |
C8 |
192.1 |
175.3 |
| N12 |
C10 |
N9 |
H9 |
12.1 |
355.4 |
| N12 |
C10 |
O11 |
N9 |
178.5 |
179.9 |
| O11 |
C10 |
N12 |
H8 |
183.2 |
180.1 |
| O11 |
C10 |
N9 |
C8 |
10.7 |
355.3 |
| O11 |
C10 |
N9 |
H9 |
190.7 |
175.3 |
| N9 |
C10 |
N12 |
H8 |
1.8 |
0.0 |
| C10 |
N9 |
C8 |
C7 |
171.0 |
35.0 |
| C8 |
N9 |
C10 |
H9 |
180.0 |
179.9 |
| C17 |
C16 |
C22 |
C21 |
0.2 |
359.5 |
| C19 |
C21 |
C22 |
H6 |
180.0 |
180.0 |
| C22 |
C21 |
C19 |
H6 |
180.0 |
180.0 |
| C21 |
C19 |
C20 |
H1 |
271.7 |
90.0 |
| C21 |
C19 |
C20 |
H2 |
31.7 |
209.9 |
| C21 |
C19 |
C20 |
H3 |
151.7 |
329.9 |
| H1 |
C20 |
C19 |
H2 |
240.0 |
240.1 |
| H1 |
C20 |
C19 |
H3 |
120.0 |
120.0 |
| H2 |
C20 |
C19 |
H3 |
240.0 |
240.0 |
| C10 |
N9 |
C8 |
H9 |
180.0 |
180.1 |
| N9 |
C8 |
C7 |
C6 |
180.6 |
180.0 |
| N9 |
C8 |
C7 |
H10 |
0.6 |
360.0 |
| C23 |
C8 |
N9 |
H9 |
172.6 |
34.7 |
| C23 |
C8 |
C7 |
H10 |
179.2 |
180.2 |
| C23 |
N24 |
C5 |
S1 |
181.1 |
180.0 |
| C7 |
C8 |
N9 |
H9 |
351.0 |
214.9 |
| C6 |
C7 |
C8 |
H10 |
180.0 |
180.1 |
| C8 |
C7 |
C6 |
H11 |
180.4 |
179.9 |
| C5 |
N24 |
C23 |
H12 |
179.7 |
180.0 |
| N24 |
C5 |
C6 |
H11 |
180.0 |
179.7 |
| N24 |
C5 |
S1 |
O3 |
235.9 |
276.5 |
| C8 |
C7 |
C6 |
H10 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
H11 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H10 |
180.5 |
180.1 |
| C7 |
C6 |
C5 |
H11 |
180.0 |
180.0 |
| S1 |
C5 |
C6 |
H11 |
359.0 |
0.1 |
| O2 |
S1 |
C5 |
O3 |
123.1 |
227.1 |
| C5 |
S1 |
O2 |
O3 |
238.1 |
123.0 |
| C19 |
C20 |
H1 |
H2 |
120.0 |
120.0 |
| C19 |
C20 |
H1 |
H3 |
240.0 |
239.9 |
| H2 |
C20 |
H1 |
H3 |
120.0 |
120.0 |
| C19 |
C20 |
H2 |
H1 |
240.0 |
240.0 |
| C19 |
C20 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C20 |
H2 |
H3 |
240.0 |
240.0 |
| C19 |
C20 |
H3 |
H1 |
120.0 |
120.0 |
| C19 |
C20 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C20 |
H3 |
H2 |
120.0 |
119.9 |
| H4 |
C18 |
C19 |
C21 |
180.3 |
180.0 |
| H5 |
C17 |
C16 |
C22 |
179.9 |
180.3 |
| H5 |
C17 |
C18 |
H4 |
359.8 |
360.0 |
| H7 |
C22 |
C21 |
H6 |
359.8 |
0.0 |
| S13 |
N12 |
H8 |
C10 |
180.0 |
180.0 |
| H8 |
N12 |
C10 |
N9 |
1.8 |
0.0 |
| C10 |
N9 |
H9 |
C8 |
180.0 |
179.9 |
| H9 |
N9 |
C8 |
C7 |
351.0 |
214.9 |
| C8 |
C7 |
H10 |
C6 |
180.0 |
180.1 |
| H10 |
C7 |
C6 |
H11 |
0.4 |
0.0 |
| H11 |
C6 |
C7 |
H10 |
0.4 |
0.0 |
| H12 |
C23 |
N24 |
C5 |
179.7 |
180.0 |