PDB Chemical Component MB6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MB6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O15 |
S13 |
1.436 |
1.421 |
| O14 |
S13 |
1.428 |
1.421 |
| S13 |
C16 |
1.594 |
1.762 |
| S13 |
N12 |
1.603 |
1.656 |
| C22 |
C16 |
1.394 |
1.382 |
| C22 |
C21 |
1.390 |
1.382 |
| C16 |
C17 |
1.394 |
1.383 |
| N12 |
C10 |
1.331 |
1.347 |
| C21 |
C19 |
1.389 |
1.384 |
| O11 |
C10 |
1.209 |
1.216 |
| C10 |
N9 |
1.324 |
1.348 |
| C17 |
C18 |
1.387 |
1.382 |
| N9 |
C8 |
1.372 |
1.399 |
| C19 |
C18 |
1.390 |
1.383 |
| C19 |
CL1 |
1.788 |
1.737 |
| C7 |
C8 |
1.410 |
1.389 |
| C7 |
N6 |
1.379 |
1.318 |
| C8 |
C23 |
1.356 |
1.393 |
| N6 |
C5 |
1.395 |
1.319 |
| C23 |
C24 |
1.384 |
1.385 |
| C5 |
C24 |
1.389 |
1.382 |
| C5 |
S1 |
1.658 |
1.762 |
| O2 |
S1 |
1.518 |
1.421 |
| O3 |
S1 |
1.453 |
1.421 |
| S1 |
N4 |
1.505 |
1.657 |
| C18 |
H1 |
1.080 |
1.080 |
| C17 |
H2 |
1.080 |
1.080 |
| C21 |
H3 |
1.080 |
1.080 |
| C22 |
H4 |
1.080 |
1.081 |
| N12 |
H5 |
1.000 |
0.971 |
| N9 |
H6 |
1.000 |
0.970 |
| C7 |
H7 |
1.080 |
1.080 |
| C23 |
H8 |
1.080 |
1.081 |
| C24 |
H9 |
1.080 |
1.080 |
| N4 |
H10 |
1.000 |
0.970 |
| N4 |
H11 |
1.000 |
0.969 |
Bond Angles for MB6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
S13 |
N12 |
111.3 |
106.4 |
| O14 |
S13 |
N12 |
106.5 |
106.4 |
| S13 |
N12 |
C10 |
124.8 |
120.0 |
| S13 |
N12 |
H5 |
117.6 |
120.0 |
| C16 |
C22 |
H4 |
120.2 |
120.0 |
| C22 |
C21 |
H3 |
120.2 |
120.0 |
| C16 |
C17 |
H2 |
120.1 |
120.0 |
| N12 |
C10 |
N9 |
112.4 |
120.0 |
| C10 |
N12 |
H5 |
117.6 |
120.0 |
| O11 |
C10 |
N9 |
123.3 |
120.0 |
| C10 |
N9 |
C8 |
127.5 |
120.0 |
| C10 |
N9 |
H6 |
116.2 |
120.0 |
| C17 |
C18 |
H1 |
120.3 |
120.0 |
| N9 |
C8 |
C23 |
110.9 |
120.5 |
| C8 |
N9 |
H6 |
116.3 |
120.0 |
| C19 |
C18 |
H1 |
120.3 |
120.0 |
| C7 |
C8 |
C23 |
118.9 |
119.0 |
| C7 |
N6 |
C5 |
120.9 |
121.8 |
| N6 |
C7 |
H7 |
119.7 |
119.7 |
| C8 |
C23 |
C24 |
120.1 |
118.4 |
| C8 |
C23 |
H8 |
119.9 |
120.8 |
| N6 |
C5 |
C24 |
116.9 |
120.9 |
| N6 |
C5 |
S1 |
126.4 |
119.5 |
| C24 |
C23 |
H8 |
120.0 |
120.8 |
| C23 |
C24 |
H9 |
118.7 |
120.4 |
| C5 |
C24 |
H9 |
118.7 |
120.4 |
| C5 |
S1 |
N4 |
107.1 |
107.2 |
| O2 |
S1 |
N4 |
109.7 |
106.4 |
| O3 |
S1 |
N4 |
113.6 |
106.4 |
| S1 |
N4 |
H10 |
109.5 |
120.0 |
| S1 |
N4 |
H11 |
109.5 |
120.0 |
| H10 |
N4 |
H11 |
109.5 |
120.0 |
Torsion Angles for MB6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
S13 |
O15 |
N12 |
118.4 |
237.0 |
| O15 |
S13 |
N12 |
C10 |
324.0 |
178.5 |
| O15 |
S13 |
N12 |
H5 |
144.0 |
358.5 |
| O15 |
S13 |
O14 |
N12 |
238.8 |
123.0 |
| O14 |
S13 |
N12 |
C10 |
203.1 |
311.4 |
| O14 |
S13 |
N12 |
H5 |
23.1 |
131.4 |
| S13 |
C16 |
C22 |
H4 |
0.4 |
359.2 |
| S13 |
C16 |
C17 |
H2 |
359.4 |
0.2 |
| S13 |
N12 |
C10 |
N9 |
182.3 |
180.0 |
| C10 |
N12 |
S13 |
H5 |
180.0 |
180.0 |
| C16 |
C22 |
C21 |
H3 |
179.9 |
179.4 |
| C22 |
C16 |
C17 |
H2 |
179.6 |
179.4 |
| C16 |
C17 |
C18 |
H1 |
180.4 |
180.0 |
| S13 |
N12 |
C10 |
H5 |
180.0 |
180.0 |
| O11 |
C10 |
N12 |
N9 |
180.5 |
180.1 |
| N12 |
C10 |
N9 |
C8 |
192.2 |
175.3 |
| N12 |
C10 |
N9 |
H6 |
12.2 |
355.4 |
| C21 |
C19 |
C18 |
H1 |
179.7 |
180.3 |
| N12 |
C10 |
O11 |
N9 |
179.4 |
179.9 |
| O11 |
C10 |
N12 |
H5 |
182.8 |
180.0 |
| O11 |
C10 |
N9 |
C8 |
11.7 |
355.3 |
| O11 |
C10 |
N9 |
H6 |
191.7 |
175.3 |
| N9 |
C10 |
N12 |
H5 |
2.3 |
359.9 |
| C10 |
N9 |
C8 |
C23 |
174.2 |
35.0 |
| C8 |
N9 |
C10 |
H6 |
180.0 |
179.9 |
| C19 |
C18 |
C17 |
H1 |
180.0 |
180.0 |
| C10 |
N9 |
C8 |
H6 |
180.0 |
180.1 |
| C7 |
C8 |
N9 |
C23 |
179.4 |
180.2 |
| N9 |
C8 |
C23 |
C24 |
178.8 |
180.0 |
| N9 |
C8 |
C23 |
H8 |
358.8 |
359.9 |
| C17 |
C18 |
C19 |
H1 |
180.0 |
180.0 |
| N9 |
C8 |
C7 |
C23 |
180.6 |
179.8 |
| C7 |
C8 |
N9 |
H6 |
173.6 |
35.2 |
| C7 |
C8 |
C23 |
C24 |
359.3 |
359.8 |
| C7 |
C8 |
C23 |
H8 |
179.3 |
179.7 |
| N6 |
C7 |
C8 |
C23 |
359.4 |
0.2 |
| C7 |
N6 |
C5 |
C24 |
1.1 |
359.7 |
| C7 |
N6 |
C5 |
S1 |
181.8 |
179.9 |
| C23 |
C8 |
N9 |
H6 |
354.2 |
215.0 |
| C24 |
C23 |
C8 |
H8 |
180.0 |
180.0 |
| C8 |
C23 |
C24 |
H9 |
182.3 |
180.0 |
| C5 |
N6 |
C7 |
H7 |
180.4 |
180.0 |
| N6 |
C5 |
C24 |
H9 |
177.5 |
180.3 |
| N6 |
C5 |
S1 |
N4 |
240.7 |
90.0 |
| C8 |
C23 |
C24 |
H8 |
180.0 |
180.0 |
| N6 |
C5 |
C24 |
C23 |
357.5 |
0.3 |
| C5 |
C24 |
C23 |
H9 |
180.0 |
180.1 |
| N6 |
C5 |
C24 |
S1 |
180.6 |
180.3 |
| C5 |
C24 |
C23 |
H8 |
182.3 |
180.0 |
| C23 |
C24 |
C5 |
H9 |
180.0 |
179.9 |
| N6 |
C5 |
S1 |
C24 |
179.4 |
179.7 |
| S1 |
C5 |
C24 |
H9 |
356.9 |
0.1 |
| O2 |
S1 |
C5 |
N4 |
241.8 |
113.5 |
| O3 |
S1 |
C5 |
N4 |
121.6 |
246.5 |
| C5 |
S1 |
N4 |
H10 |
180.0 |
150.0 |
| C5 |
S1 |
N4 |
H11 |
300.0 |
330.0 |
| C5 |
S1 |
O2 |
N4 |
116.5 |
245.9 |
| O3 |
S1 |
O2 |
N4 |
232.9 |
122.9 |
| O2 |
S1 |
N4 |
H10 |
297.3 |
36.4 |
| O2 |
S1 |
N4 |
H11 |
57.3 |
216.5 |
| C5 |
S1 |
O3 |
N4 |
242.7 |
114.1 |
| O2 |
S1 |
O3 |
N4 |
124.9 |
237.1 |
| O3 |
S1 |
N4 |
H10 |
63.3 |
263.5 |
| O3 |
S1 |
N4 |
H11 |
183.3 |
83.6 |
| H10 |
N4 |
S1 |
H11 |
240.0 |
179.9 |
| H2 |
C17 |
C18 |
H1 |
0.4 |
0.0 |
| H4 |
C22 |
C21 |
H3 |
359.9 |
0.3 |
| S13 |
N12 |
H5 |
C10 |
180.0 |
180.0 |
| H5 |
N12 |
C10 |
N9 |
2.3 |
359.9 |
| C10 |
N9 |
H6 |
C8 |
180.0 |
179.9 |
| H6 |
N9 |
C8 |
C23 |
354.2 |
215.0 |
| H7 |
C7 |
C8 |
C23 |
179.4 |
180.2 |
| H7 |
C7 |
N6 |
C5 |
180.4 |
180.0 |
| C8 |
C23 |
H8 |
C24 |
180.0 |
180.0 |
| H8 |
C23 |
C24 |
H9 |
2.3 |
360.0 |
| H9 |
C24 |
C23 |
H8 |
2.3 |
360.0 |
| S1 |
N4 |
H10 |
H11 |
120.0 |
180.1 |
| S1 |
N4 |
H11 |
H10 |
240.0 |
179.9 |