PDB Chemical Component MB4
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MB4
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O14 |
S13 |
1.427 |
1.422 |
| O15 |
S13 |
1.430 |
1.421 |
| C22 |
C21 |
1.391 |
1.382 |
| C22 |
C16 |
1.401 |
1.383 |
| S13 |
C16 |
1.612 |
1.762 |
| S13 |
N12 |
1.608 |
1.657 |
| C21 |
C19 |
1.388 |
1.382 |
| C16 |
C17 |
1.400 |
1.382 |
| N12 |
C10 |
1.342 |
1.347 |
| O11 |
C10 |
1.215 |
1.216 |
| C19 |
C18 |
1.389 |
1.382 |
| C10 |
N9 |
1.346 |
1.348 |
| C17 |
C18 |
1.396 |
1.383 |
| C17 |
C20 |
1.508 |
1.507 |
| N9 |
C8 |
1.372 |
1.400 |
| C7 |
C8 |
1.409 |
1.392 |
| C7 |
C6 |
1.413 |
1.385 |
| C8 |
C23 |
1.388 |
1.388 |
| C6 |
C5 |
1.409 |
1.382 |
| C23 |
N24 |
1.337 |
1.319 |
| C5 |
N24 |
1.349 |
1.319 |
| C5 |
S1 |
1.629 |
1.762 |
| O3 |
S1 |
1.461 |
1.421 |
| O2 |
S1 |
1.434 |
1.422 |
| S1 |
N4 |
1.565 |
1.656 |
| C19 |
H1 |
1.080 |
1.081 |
| C18 |
H2 |
1.080 |
1.080 |
| C21 |
H3 |
1.080 |
1.079 |
| C22 |
H4 |
1.080 |
1.080 |
| N12 |
H5 |
1.000 |
0.970 |
| N9 |
H6 |
1.000 |
0.970 |
| C7 |
H7 |
1.081 |
1.080 |
| C6 |
H8 |
1.080 |
1.080 |
| C23 |
H9 |
1.080 |
1.079 |
| N4 |
H10 |
1.000 |
0.970 |
| N4 |
H11 |
0.999 |
0.970 |
| C20 |
H12 |
1.100 |
1.090 |
| C20 |
H13 |
1.100 |
1.091 |
| C20 |
H14 |
1.100 |
1.089 |
Bond Angles for MB4
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
S13 |
N12 |
110.5 |
106.4 |
| O15 |
S13 |
N12 |
106.6 |
106.4 |
| C22 |
C21 |
H3 |
120.3 |
120.0 |
| C16 |
C22 |
H4 |
119.4 |
120.0 |
| S13 |
N12 |
C10 |
124.5 |
120.0 |
| S13 |
N12 |
H5 |
117.7 |
119.9 |
| C21 |
C19 |
H1 |
120.0 |
120.0 |
| C16 |
C17 |
C20 |
123.1 |
120.1 |
| N12 |
C10 |
N9 |
115.0 |
120.0 |
| C10 |
N12 |
H5 |
117.7 |
120.1 |
| O11 |
C10 |
N9 |
123.2 |
120.0 |
| C18 |
C19 |
H1 |
120.0 |
120.0 |
| C19 |
C18 |
H2 |
119.6 |
120.0 |
| C10 |
N9 |
C8 |
128.4 |
120.0 |
| C10 |
N9 |
H6 |
115.8 |
120.0 |
| C17 |
C18 |
H2 |
119.6 |
120.0 |
| C17 |
C20 |
H12 |
109.5 |
109.5 |
| C17 |
C20 |
H13 |
109.5 |
109.5 |
| C17 |
C20 |
H14 |
109.5 |
109.5 |
| N9 |
C8 |
C23 |
114.1 |
120.5 |
| C8 |
N9 |
H6 |
115.8 |
120.0 |
| C7 |
C8 |
C23 |
117.2 |
119.1 |
| C7 |
C6 |
C5 |
120.5 |
119.2 |
| C6 |
C7 |
H7 |
120.4 |
120.8 |
| C7 |
C6 |
H8 |
119.7 |
120.4 |
| C8 |
C23 |
N24 |
122.7 |
120.6 |
| C8 |
C23 |
H9 |
118.6 |
119.7 |
| C6 |
C5 |
N24 |
117.9 |
120.9 |
| C6 |
C5 |
S1 |
125.0 |
119.6 |
| C5 |
C6 |
H8 |
119.7 |
120.3 |
| N24 |
C23 |
H9 |
118.7 |
119.7 |
| C5 |
S1 |
N4 |
110.5 |
107.2 |
| O3 |
S1 |
N4 |
110.0 |
106.4 |
| O2 |
S1 |
N4 |
109.5 |
106.4 |
| S1 |
N4 |
H10 |
109.5 |
120.0 |
| S1 |
N4 |
H11 |
109.5 |
120.0 |
| H10 |
N4 |
H11 |
109.5 |
120.1 |
| H12 |
C20 |
H13 |
109.5 |
109.4 |
| H12 |
C20 |
H14 |
109.5 |
109.5 |
| H13 |
C20 |
H14 |
109.5 |
109.5 |
Torsion Angles for MB4
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
S13 |
O14 |
N12 |
117.5 |
123.0 |
| O14 |
S13 |
N12 |
C10 |
314.1 |
312.2 |
| O14 |
S13 |
N12 |
H5 |
134.2 |
132.1 |
| O14 |
S13 |
O15 |
N12 |
240.0 |
237.1 |
| O15 |
S13 |
N12 |
C10 |
194.4 |
179.3 |
| O15 |
S13 |
N12 |
H5 |
14.4 |
359.2 |
| C22 |
C21 |
C19 |
H1 |
180.0 |
180.3 |
| C16 |
C22 |
C21 |
H3 |
180.5 |
179.4 |
| C22 |
C16 |
C17 |
C20 |
180.3 |
179.4 |
| S13 |
C16 |
C22 |
H4 |
0.8 |
359.4 |
| S13 |
C16 |
C17 |
C20 |
358.5 |
0.3 |
| S13 |
N12 |
C10 |
N9 |
174.2 |
175.0 |
| C10 |
N12 |
S13 |
H5 |
180.0 |
180.1 |
| C18 |
C19 |
C21 |
H1 |
180.0 |
179.6 |
| C21 |
C19 |
C18 |
H2 |
179.8 |
180.3 |
| C16 |
C17 |
C18 |
H2 |
179.9 |
180.0 |
| C16 |
C17 |
C20 |
H12 |
90.2 |
265.7 |
| C16 |
C17 |
C20 |
H13 |
210.2 |
25.6 |
| C16 |
C17 |
C20 |
H14 |
330.2 |
145.7 |
| S13 |
N12 |
C10 |
H5 |
180.0 |
179.9 |
| O11 |
C10 |
N12 |
N9 |
181.8 |
179.9 |
| N12 |
C10 |
N9 |
C8 |
189.6 |
185.0 |
| N12 |
C10 |
N9 |
H6 |
9.6 |
5.0 |
| N12 |
C10 |
O11 |
N9 |
178.0 |
180.1 |
| O11 |
C10 |
N12 |
H5 |
176.0 |
175.0 |
| O11 |
C10 |
N9 |
C8 |
7.8 |
5.1 |
| O11 |
C10 |
N9 |
H6 |
187.8 |
185.1 |
| C21 |
C19 |
C18 |
H1 |
180.0 |
180.4 |
| C17 |
C18 |
C19 |
H2 |
180.0 |
180.0 |
| N9 |
C10 |
N12 |
H5 |
354.2 |
355.1 |
| C10 |
N9 |
C8 |
C23 |
176.0 |
214.1 |
| C8 |
N9 |
C10 |
H6 |
180.0 |
180.0 |
| C17 |
C18 |
C19 |
H1 |
179.8 |
180.0 |
| C19 |
C18 |
C17 |
H2 |
180.0 |
180.0 |
| C20 |
C17 |
C18 |
H2 |
0.2 |
360.0 |
| H12 |
C20 |
C17 |
H13 |
240.0 |
240.1 |
| H12 |
C20 |
C17 |
H14 |
120.0 |
120.0 |
| H13 |
C20 |
C17 |
H14 |
240.0 |
239.9 |
| C10 |
N9 |
C8 |
H6 |
180.0 |
180.0 |
| C7 |
C8 |
N9 |
C23 |
179.5 |
180.3 |
| N9 |
C8 |
C23 |
N24 |
179.6 |
180.0 |
| N9 |
C8 |
C23 |
H9 |
359.6 |
0.0 |
| N9 |
C8 |
C7 |
C23 |
180.5 |
179.7 |
| C7 |
C8 |
N9 |
H6 |
175.5 |
214.4 |
| C7 |
C8 |
C23 |
N24 |
0.1 |
359.7 |
| C7 |
C8 |
C23 |
H9 |
180.1 |
179.7 |
| C6 |
C7 |
C8 |
C23 |
359.5 |
0.3 |
| C7 |
C6 |
C5 |
N24 |
0.6 |
359.7 |
| C7 |
C6 |
C5 |
S1 |
180.7 |
180.0 |
| C5 |
C6 |
C7 |
H8 |
180.0 |
180.1 |
| C23 |
C8 |
N9 |
H6 |
356.0 |
34.1 |
| N24 |
C23 |
C8 |
H9 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
H7 |
180.2 |
180.0 |
| C7 |
C6 |
C5 |
H8 |
180.0 |
179.9 |
| C6 |
C5 |
S1 |
N4 |
240.7 |
90.0 |
| C8 |
C23 |
N24 |
H9 |
180.0 |
180.1 |
| C6 |
C5 |
N24 |
C23 |
358.9 |
0.3 |
| C6 |
C5 |
N24 |
S1 |
180.1 |
180.3 |
| N24 |
C5 |
C6 |
H8 |
180.6 |
179.8 |
| C5 |
N24 |
C23 |
H9 |
180.8 |
180.0 |
| C6 |
C5 |
S1 |
N24 |
179.9 |
179.7 |
| S1 |
C5 |
C6 |
H8 |
0.7 |
0.1 |
| O3 |
S1 |
C5 |
N4 |
238.8 |
246.4 |
| O2 |
S1 |
C5 |
N4 |
120.8 |
113.5 |
| C5 |
S1 |
N4 |
H10 |
180.0 |
360.0 |
| C5 |
S1 |
N4 |
H11 |
300.0 |
180.0 |
| C5 |
S1 |
O3 |
N4 |
121.5 |
114.1 |
| O2 |
S1 |
O3 |
N4 |
240.6 |
237.1 |
| O3 |
S1 |
N4 |
H10 |
300.7 |
113.5 |
| O3 |
S1 |
N4 |
H11 |
60.7 |
293.6 |
| C5 |
S1 |
O2 |
N4 |
238.6 |
245.9 |
| O3 |
S1 |
O2 |
N4 |
119.8 |
122.9 |
| O2 |
S1 |
N4 |
H10 |
59.2 |
246.4 |
| O2 |
S1 |
N4 |
H11 |
179.2 |
66.5 |
| H10 |
N4 |
S1 |
H11 |
240.0 |
179.9 |
| H1 |
C19 |
C18 |
H2 |
359.8 |
360.0 |
| H2 |
C18 |
C19 |
H1 |
359.8 |
360.0 |
| H3 |
C21 |
C19 |
H1 |
0.0 |
0.3 |
| H4 |
C22 |
C21 |
H3 |
0.5 |
360.0 |
| S13 |
N12 |
H5 |
C10 |
180.0 |
180.1 |
| H5 |
N12 |
C10 |
N9 |
354.2 |
355.1 |
| C10 |
N9 |
H6 |
C8 |
180.0 |
180.0 |
| H6 |
N9 |
C8 |
C23 |
356.0 |
34.1 |
| H7 |
C7 |
C8 |
C23 |
179.5 |
180.3 |
| H7 |
C7 |
C6 |
C5 |
180.2 |
180.0 |
| H7 |
C7 |
C6 |
H8 |
0.2 |
359.9 |
| C7 |
C6 |
H8 |
C5 |
180.0 |
180.1 |
| H8 |
C6 |
C7 |
H7 |
0.2 |
359.9 |
| H8 |
C6 |
C5 |
N24 |
180.6 |
179.8 |
| H8 |
C6 |
C5 |
S1 |
0.7 |
0.1 |
| C8 |
C23 |
H9 |
N24 |
180.0 |
179.9 |
| S1 |
N4 |
H10 |
H11 |
120.0 |
180.1 |
| S1 |
N4 |
H11 |
H10 |
240.0 |
179.9 |
| C17 |
C20 |
H12 |
H13 |
120.0 |
119.9 |
| C17 |
C20 |
H12 |
H14 |
240.0 |
239.9 |
| H13 |
C20 |
H12 |
H14 |
120.0 |
120.0 |
| C17 |
C20 |
H13 |
H12 |
240.0 |
240.1 |
| C17 |
C20 |
H13 |
H14 |
120.0 |
120.1 |
| H12 |
C20 |
H13 |
H14 |
240.0 |
240.0 |
| C17 |
C20 |
H14 |
H12 |
120.0 |
120.0 |
| C17 |
C20 |
H14 |
H13 |
240.0 |
240.0 |
| H12 |
C20 |
H14 |
H13 |
120.0 |
119.9 |