PDB Chemical Component MAL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for MAL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O6 |
C6 |
1.391 |
1.429 |
| O5 |
C1 |
1.449 |
1.429 |
| O5 |
C5 |
1.456 |
1.429 |
| C6 |
C5 |
1.514 |
1.531 |
| C6' |
O6' |
1.400 |
1.429 |
| C6' |
C5' |
1.509 |
1.530 |
| O5' |
C5' |
1.441 |
1.430 |
| O5' |
C1' |
1.430 |
1.429 |
| C1 |
O1 |
1.435 |
1.429 |
| C1 |
C2 |
1.512 |
1.531 |
| C4' |
C5' |
1.524 |
1.531 |
| C4' |
O1 |
1.423 |
1.430 |
| C4' |
C3' |
1.513 |
1.531 |
| C2' |
C1' |
1.520 |
1.530 |
| C2' |
C3' |
1.522 |
1.532 |
| C2' |
O2' |
1.402 |
1.429 |
| C5 |
C4 |
1.529 |
1.531 |
| O3' |
C3' |
1.412 |
1.429 |
| C1' |
O1' |
1.383 |
1.429 |
| C2 |
O2 |
1.424 |
1.429 |
| C2 |
C3 |
1.538 |
1.531 |
| C4 |
C3 |
1.534 |
1.532 |
| C4 |
O4 |
1.415 |
1.429 |
| C3 |
O3 |
1.420 |
1.429 |
| C1 |
H1 |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.090 |
| C3 |
H3 |
1.100 |
1.090 |
| C4 |
H4 |
1.100 |
1.090 |
| C5 |
H5 |
1.100 |
1.090 |
| C6 |
H62 |
1.100 |
1.090 |
| C6 |
H61 |
1.100 |
1.091 |
| O2 |
HO2 |
0.950 |
0.967 |
| O3 |
HO3 |
0.950 |
0.967 |
| O4 |
HO4 |
0.950 |
0.967 |
| O6 |
HO6 |
0.950 |
0.967 |
| C1' |
H1' |
1.100 |
1.091 |
| C2' |
H2' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.089 |
| C4' |
H4' |
1.100 |
1.090 |
| C5' |
H5' |
1.100 |
1.089 |
| C6' |
H6'2 |
1.100 |
1.090 |
| C6' |
H6'1 |
1.100 |
1.090 |
| O1' |
HO1' |
0.950 |
0.967 |
| O2' |
HO2' |
0.950 |
0.967 |
| O3' |
HO3' |
0.950 |
0.967 |
| O6' |
HO6' |
0.950 |
0.967 |
Bond Angles for MAL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
H62 |
109.4 |
109.5 |
| O6 |
C6 |
H61 |
109.3 |
109.5 |
| O5 |
C1 |
H1 |
109.7 |
109.5 |
| O5 |
C5 |
H5 |
109.6 |
109.5 |
| C6 |
C5 |
H5 |
108.8 |
109.4 |
| O6' |
C6' |
H6'2 |
109.4 |
109.5 |
| O6' |
C6' |
H6'1 |
109.4 |
109.4 |
| C6' |
O6' |
HO6' |
109.5 |
114.0 |
| C6' |
C5' |
H5' |
109.0 |
109.5 |
| O5' |
C5' |
H5' |
109.9 |
109.5 |
| O5' |
C1' |
H1' |
109.0 |
109.5 |
| C1 |
C2 |
O2 |
111.0 |
109.5 |
| C1 |
C2 |
C3 |
109.6 |
109.2 |
| C2 |
C1 |
H1 |
108.8 |
109.5 |
| C1 |
C2 |
H2 |
108.4 |
109.5 |
| C5' |
C4' |
O1 |
109.6 |
109.5 |
| C5' |
C4' |
H4' |
108.8 |
109.6 |
| C4' |
C5' |
H5' |
108.7 |
109.5 |
| O1 |
C4' |
H4' |
110.2 |
109.5 |
| C4' |
C3' |
H3' |
108.5 |
109.6 |
| C2' |
C1' |
O1' |
109.3 |
109.5 |
| C2' |
C1' |
H1' |
107.8 |
109.5 |
| C3' |
C2' |
O2' |
107.4 |
109.5 |
| C3' |
C2' |
H2' |
108.8 |
109.5 |
| C2' |
C3' |
H3' |
108.3 |
109.6 |
| O2' |
C2' |
H2' |
110.4 |
109.5 |
| C2' |
O2' |
HO2' |
109.5 |
114.1 |
| C5 |
C4 |
O4 |
108.8 |
109.6 |
| C5 |
C4 |
H4 |
108.0 |
109.6 |
| O3' |
C3' |
H3' |
109.8 |
109.6 |
| O1' |
C1' |
H1' |
109.7 |
109.4 |
| C1' |
O1' |
HO1' |
109.5 |
114.0 |
| C3 |
C2 |
O2 |
110.1 |
109.6 |
| O2 |
C2 |
H2 |
109.6 |
109.5 |
| C2 |
O2 |
HO2 |
109.5 |
114.0 |
| C2 |
C3 |
O3 |
109.4 |
109.6 |
| C3 |
C2 |
H2 |
108.1 |
109.5 |
| C2 |
C3 |
H3 |
108.6 |
109.5 |
| C4 |
C3 |
O3 |
110.7 |
109.5 |
| C4 |
C3 |
H3 |
108.6 |
109.6 |
| O4 |
C4 |
H4 |
109.6 |
109.5 |
| C4 |
O4 |
HO4 |
109.5 |
114.0 |
| O3 |
C3 |
H3 |
110.2 |
109.5 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| H61 |
C6 |
H62 |
109.5 |
109.5 |
| H6'1 |
C6' |
H6'2 |
109.5 |
109.4 |
Torsion Angles for MAL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O6 |
C6 |
C5 |
H5 |
299.3 |
305.0 |
| H61 |
C6 |
O6 |
H62 |
119.9 |
240.0 |
| C2 |
C1 |
O5 |
H1 |
119.7 |
120.0 |
| O5 |
C1 |
C2 |
H2 |
300.9 |
297.7 |
| C5 |
O5 |
C1 |
H1 |
181.2 |
178.9 |
| C6 |
C5 |
O5 |
H5 |
240.7 |
240.0 |
| O5 |
C5 |
C4 |
H4 |
65.1 |
62.3 |
| O5 |
C5 |
C6 |
H5 |
119.8 |
120.0 |
| C6 |
C5 |
C4 |
O4 |
63.0 |
62.5 |
| C6 |
C5 |
C4 |
H4 |
304.2 |
302.3 |
| O6' |
C6' |
C5' |
H5' |
312.5 |
303.5 |
| H6'1 |
C6' |
O6' |
H6'2 |
119.9 |
240.1 |
| O5' |
C5' |
C6' |
H5' |
119.5 |
120.0 |
| C6' |
C5' |
C4' |
O1 |
65.7 |
62.5 |
| C6' |
C5' |
C4' |
H4' |
305.1 |
302.4 |
| C4' |
C5' |
C6' |
H5' |
240.4 |
239.9 |
| C6' |
C5' |
O5' |
H5' |
241.1 |
240.0 |
| C5' |
O5' |
C1' |
H1' |
186.7 |
178.8 |
| O5' |
C5' |
C4' |
H4' |
64.8 |
62.4 |
| C4' |
C5' |
O5' |
H5' |
119.8 |
120.0 |
| C2' |
C1' |
O5' |
H1' |
119.1 |
120.0 |
| O1' |
C1' |
O5' |
H1' |
240.2 |
240.0 |
| O5' |
C1' |
O1' |
HO1' |
180.0 |
60.0 |
| C1 |
O1 |
C4' |
H4' |
342.2 |
325.6 |
| O5 |
C1 |
C2 |
H1 |
239.8 |
240.0 |
| C3 |
C2 |
C1 |
O2 |
238.2 |
240.0 |
| O2 |
C2 |
C1 |
H2 |
239.6 |
239.9 |
| C1 |
C2 |
O2 |
HO2 |
180.0 |
59.9 |
| C1 |
C2 |
C3 |
O3 |
181.4 |
183.1 |
| C3 |
C2 |
C1 |
H2 |
117.8 |
119.9 |
| C1 |
C2 |
C3 |
H3 |
61.2 |
63.0 |
| C6' |
C5' |
C4' |
H5' |
119.8 |
120.1 |
| O5' |
C5' |
C4' |
H5' |
239.5 |
240.0 |
| O1 |
C4' |
C5' |
H4' |
120.6 |
120.1 |
| C5' |
C4' |
C3' |
H3' |
294.3 |
297.1 |
| C5' |
C4' |
O1 |
H4' |
240.3 |
239.9 |
| O1 |
C4' |
C5' |
H5' |
305.9 |
302.4 |
| O1 |
C4' |
C3' |
H3' |
54.7 |
57.0 |
| C4' |
C3' |
C2' |
O2' |
189.2 |
183.1 |
| C4' |
C3' |
C2' |
H2' |
69.7 |
63.0 |
| C2' |
C3' |
C4' |
H3' |
118.9 |
119.9 |
| O3' |
C3' |
C4' |
H3' |
240.0 |
239.7 |
| O5' |
C1' |
C2' |
H1' |
240.2 |
240.0 |
| O1' |
C1' |
C2' |
H1' |
119.2 |
120.0 |
| C2' |
C1' |
O1' |
HO1' |
302.6 |
180.0 |
| C4' |
C3' |
C2' |
H3' |
241.0 |
240.1 |
| C3' |
C2' |
C1' |
O1' |
288.7 |
297.6 |
| C3' |
C2' |
C1' |
H1' |
169.5 |
177.7 |
| O2' |
C2' |
C3' |
H2' |
119.5 |
120.1 |
| C3' |
C2' |
O2' |
HO2' |
301.8 |
179.7 |
| O3' |
C3' |
C2' |
H3' |
119.6 |
120.2 |
| O2' |
C2' |
C1' |
O1' |
47.7 |
57.5 |
| O2' |
C2' |
C1' |
H1' |
288.6 |
297.6 |
| C3' |
C2' |
O2' |
H2' |
241.6 |
239.9 |
| O2' |
C2' |
C3' |
H3' |
308.2 |
303.0 |
| C5 |
C4 |
C3 |
O3 |
175.0 |
176.9 |
| C5 |
C4 |
C3 |
H3 |
296.1 |
297.0 |
| O4 |
C4 |
C5 |
H4 |
118.9 |
120.2 |
| C5 |
C4 |
O4 |
HO4 |
180.0 |
179.7 |
| C4' |
C3' |
O3' |
H3' |
119.2 |
120.3 |
| O3' |
C3' |
C2' |
H2' |
308.3 |
303.0 |
| C2' |
C3' |
O3' |
H3' |
241.3 |
239.8 |
| O5' |
C1' |
O1' |
H1' |
119.4 |
120.0 |
| C2' |
C1' |
O1' |
H1' |
242.0 |
240.0 |
| C1 |
C2 |
O2 |
C3 |
238.4 |
240.3 |
| O2 |
C2 |
C1 |
H1 |
300.7 |
297.5 |
| C1 |
C2 |
O2 |
H2 |
119.7 |
120.1 |
| O2 |
C2 |
C3 |
O3 |
59.1 |
63.2 |
| C3 |
C2 |
O2 |
H2 |
241.2 |
239.8 |
| O2 |
C2 |
C3 |
H3 |
298.8 |
303.1 |
| C1 |
C2 |
C3 |
O2 |
122.4 |
119.9 |
| C3 |
C2 |
C1 |
H1 |
178.9 |
177.6 |
| C1 |
C2 |
C3 |
H2 |
242.0 |
240.1 |
| O2 |
C2 |
C3 |
H2 |
119.7 |
120.2 |
| C3 |
C2 |
O2 |
HO2 |
301.6 |
179.7 |
| C4 |
C3 |
C2 |
O3 |
121.4 |
119.9 |
| C4 |
C3 |
C2 |
H3 |
241.6 |
240.0 |
| O3 |
C3 |
C2 |
H3 |
120.2 |
120.1 |
| C2 |
C3 |
O3 |
HO3 |
180.0 |
300.1 |
| C4 |
C3 |
C2 |
O2 |
180.5 |
183.1 |
| C2 |
C3 |
C4 |
O3 |
239.4 |
240.1 |
| C4 |
C3 |
C2 |
H2 |
60.8 |
62.9 |
| C2 |
C3 |
C4 |
H3 |
118.3 |
119.9 |
| O3 |
C3 |
C4 |
H3 |
238.9 |
239.8 |
| C4 |
C3 |
O3 |
HO3 |
59.4 |
180.5 |
| C5 |
C4 |
O4 |
H4 |
242.1 |
239.8 |
| O4 |
C4 |
C3 |
O3 |
296.4 |
296.8 |
| O4 |
C4 |
C3 |
H3 |
57.5 |
57.0 |
| O3 |
C3 |
C2 |
O2 |
59.1 |
63.2 |
| O3 |
C3 |
C2 |
H2 |
299.4 |
303.0 |
| C2 |
C3 |
O3 |
H3 |
240.7 |
239.8 |
| C4 |
C3 |
O3 |
H3 |
120.1 |
120.2 |
| H1 |
C1 |
C2 |
O2 |
300.7 |
297.5 |
| H1 |
C1 |
C2 |
C3 |
178.9 |
177.6 |
| H1 |
C1 |
C2 |
H2 |
61.1 |
57.7 |
| C1 |
C2 |
H2 |
O2 |
238.7 |
239.9 |
| C1 |
C2 |
H2 |
C3 |
118.8 |
119.7 |
| H2 |
C2 |
C1 |
H1 |
61.1 |
57.7 |
| C3 |
C2 |
H2 |
O2 |
120.0 |
120.2 |
| H2 |
C2 |
O2 |
HO2 |
60.3 |
299.9 |
| H2 |
C2 |
C3 |
O3 |
299.4 |
303.0 |
| H2 |
C2 |
C3 |
H3 |
179.2 |
182.9 |
| H3 |
C3 |
C2 |
O2 |
298.8 |
303.1 |
| C2 |
C3 |
H3 |
O3 |
119.8 |
120.2 |
| H3 |
C3 |
C2 |
H2 |
179.2 |
182.9 |
| C4 |
C3 |
H3 |
O3 |
238.6 |
239.8 |
| H3 |
C3 |
O3 |
HO3 |
299.2 |
60.2 |
| C5 |
C4 |
H4 |
O4 |
118.4 |
120.2 |
| H4 |
C4 |
C3 |
O3 |
56.9 |
56.9 |
| H4 |
C4 |
C3 |
H3 |
177.9 |
177.1 |
| H4 |
C4 |
O4 |
HO4 |
297.9 |
299.9 |
| H5 |
C5 |
C4 |
O4 |
304.4 |
302.6 |
| H5 |
C5 |
C4 |
H4 |
185.5 |
182.4 |
| O6 |
C6 |
H62 |
H61 |
119.8 |
240.0 |
| H62 |
C6 |
C5 |
H5 |
179.3 |
65.1 |
| O6 |
C6 |
H61 |
H62 |
240.2 |
120.1 |
| H61 |
C6 |
C5 |
H5 |
59.4 |
185.0 |
| HO2 |
O2 |
C2 |
H2 |
60.3 |
299.9 |
| HO3 |
O3 |
C3 |
H3 |
299.2 |
60.2 |
| HO4 |
O4 |
C4 |
H4 |
297.9 |
299.9 |
| HO6 |
O6 |
C6 |
H62 |
300.0 |
60.0 |
| HO6 |
O6 |
C6 |
H61 |
59.9 |
300.0 |
| C2' |
C1' |
H1' |
O1' |
118.9 |
120.0 |
| H1' |
C1' |
O1' |
HO1' |
60.6 |
300.0 |
| H2' |
C2' |
C1' |
O1' |
168.4 |
177.7 |
| H2' |
C2' |
C1' |
H1' |
49.3 |
57.7 |
| C3' |
C2' |
H2' |
O2' |
117.6 |
120.1 |
| H2' |
C2' |
C3' |
H3' |
188.7 |
182.8 |
| H2' |
C2' |
O2' |
HO2' |
60.3 |
299.8 |
| H3' |
C3' |
C2' |
O2' |
308.2 |
303.0 |
| H3' |
C3' |
C2' |
H2' |
188.7 |
182.8 |
| C5' |
C4' |
H4' |
O1 |
120.2 |
120.1 |
| H4' |
C4' |
C5' |
H5' |
185.4 |
182.4 |
| H4' |
C4' |
C3' |
H3' |
174.6 |
177.1 |
| H5' |
C5' |
C4' |
O1 |
305.9 |
302.4 |
| H5' |
C5' |
C4' |
H4' |
185.4 |
182.4 |
| O6' |
C6' |
H6'2 |
H6'1 |
119.9 |
240.1 |
| H6'2 |
C6' |
O6' |
HO6' |
300.0 |
60.0 |
| H6'2 |
C6' |
C5' |
H5' |
192.4 |
63.5 |
| O6' |
C6' |
H6'1 |
H6'2 |
240.1 |
120.0 |
| H6'1 |
C6' |
O6' |
HO6' |
60.0 |
300.0 |
| H6'1 |
C6' |
C5' |
H5' |
72.5 |
183.5 |
| HO1' |
O1' |
C1' |
H1' |
60.6 |
300.0 |
| HO2' |
O2' |
C2' |
H2' |
60.3 |
299.8 |
| HO3' |
O3' |
C3' |
H3' |
60.8 |
60.1 |
| HO6' |
O6' |
C6' |
H6'2 |
300.0 |
60.0 |
| HO6' |
O6' |
C6' |
H6'1 |
60.0 |
300.0 |