PDB Chemical Component MA7

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MA7

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N3 1.330 1.347
C2 N1 1.337 1.369
C2 H2 1.080 1.083
C4 C5 1.384 1.383
C4 N9 1.377 1.368
C4 N3 1.347 1.340
C5 C6 1.405 1.382
C5 N7 1.387 1.370
C6 N1 1.348 1.369
C6 N6 1.336 1.406
C8 N9 1.372 1.372
C8 N7 1.310 1.318
C8 H8 1.080 1.081
P OP1 1.483 1.501
P OP2 1.479 1.617
P O5' 1.591 1.619
P OP3   1.617
OP2 HOP2 0.950 0.981
O5' C5' 1.425 1.417
N9 C1' 1.462 1.459
N1 CN 1.487 1.458
N6 H61 1.000 1.002
N6 H62 1.000 1.002
CN HN1 1.100 1.093
CN HN2 1.100 1.094
CN HN3 1.099 1.094
C2' C1' 1.524 1.522
C2' C3' 1.519 1.512
C2' H2' 1.100 1.097
C2' H2'' 1.100 1.094
C5' C4' 1.510 1.523
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.091
C4' O4' 1.446 1.443
C4' C3' 1.526 1.525
C4' H4' 1.100 1.095
O4' C1' 1.420 1.439
C1' H1' 1.101 1.095
C3' O3' 1.434 1.425
C3' H3' 1.100 1.093
O3' HO3' 0.950 0.969
OP3 HOP3   0.981

Bond Angles for MA7

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 129.2 124.6
N3 C2 H2 115.4 118.2
C2 N3 C4 110.6 113.6
N1 C2 H2 115.4 117.1
C2 N1 C6 118.9 118.9
C2 N1 CN 120.9 119.4
C5 C4 N9 105.8 105.2
C5 C4 N3 126.7 127.3
C4 C5 C6 117.1 115.6
C4 C5 N7 110.7 111.0
N9 C4 N3 127.5 127.5
C4 N9 C8 105.7 106.9
C4 N9 C1' 127.1 127.0
C6 C5 N7 132.2 133.3
C5 C6 N1 117.6 119.9
C5 C6 N6 123.8 121.0
C5 N7 C8 103.9 104.7
N1 C6 N6 118.6 119.1
C6 N1 CN 120.2 121.7
C6 N6 H61 125.5 119.4
C6 N6 H62 109.0 119.4
N9 C8 N7 113.9 112.2
N9 C8 H8 123.0 122.2
C8 N9 C1' 127.2 126.2
N7 C8 H8 123.1 125.6
OP1 P OP2 119.6 115.3
OP1 P O5' 109.8 115.0
OP1 P OP3   115.0
OP2 P O5' 109.8 103.7
OP2 P OP3   103.3
P OP2 HOP2 109.5 118.9
O5' P OP3   102.9
P O5' C5' 121.1 118.5
P OP3 HOP3   118.9
O5' C5' C4' 109.8 108.7
O5' C5' H5' 109.3 109.2
O5' C5' H5'' 109.4 109.2
N9 C1' C2' 114.3 114.3
N9 C1' O4' 107.4 110.0
N9 C1' H1' 106.6 105.9
N1 CN HN1 109.5 108.9
N1 CN HN2 109.5 110.4
N1 CN HN3 109.5 109.7
H61 N6 H62 125.5 120.9
HN1 CN HN2 109.5 109.5
HN1 CN HN3 109.5 109.7
HN2 CN HN3 109.5 108.6
C1' C2' C3' 102.1 101.6
C1' C2' H2' 113.6 110.5
C1' C2' H2'' 112.0 111.7
C2' C1' O4' 106.0 106.7
C2' C1' H1' 107.9 111.7
C3' C2' H2' 113.6 110.0
C3' C2' H2'' 112.0 114.2
C2' C3' C4' 102.6 103.2
C2' C3' O3' 109.7 108.4
C2' C3' H3' 113.8 113.7
H2' C2' H2'' 103.9 108.7
C4' C5' H5' 109.3 110.1
C4' C5' H5'' 109.4 110.1
C5' C4' O4' 108.6 108.0
C5' C4' C3' 113.6 112.7
C5' C4' H4' 106.2 109.4
H5' C5' H5'' 109.7 109.6
O4' C4' C3' 105.7 106.8
O4' C4' H4' 113.9 107.7
C4' O4' C1' 110.4 108.7
C3' C4' H4' 109.0 112.0
C4' C3' O3' 109.7 109.6
C4' C3' H3' 113.8 114.0
O4' C1' H1' 114.9 108.1
O3' C3' H3' 107.2 107.8
C3' O3' HO3' 109.5 106.6

Torsion Angles for MA7

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C2 N3 H2 180.0 180.0
N3 C2 N1 C6 0.4 0.0
N3 C2 N1 CN 180.0 180.1
C5 C4 N3 C2 359.9 0.1
N9 C4 N3 C2 179.4 180.0
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 359.7 359.9
C5 C6 N1 C2 360.0 0.0
C2 N1 C6 N6 179.7 179.9
C6 N1 C2 CN 180.3 180.0
C2 N1 CN HN1 320.9 8.9
C2 N1 CN HN2 200.9 129.2
C2 N1 CN HN3 80.9 248.8
N3 C2 H2 N1 180.0 180.0
H2 C2 N3 C4 179.7 179.9
H2 C2 N1 C6 180.4 180.1
H2 C2 N1 CN 0.0 0.1
C2 N3 C4 C5 359.9 0.1
N9 C4 C5 N3 180.4 180.1
C5 C4 N9 C8 358.9 360.0
C5 C4 N9 C1' 178.0 179.9
C6 C5 C4 N7 179.9 180.0
C4 C5 C6 N1 359.7 360.0
C4 C5 C6 N6 180.0 180.1
C4 C5 N7 C8 359.7 360.0
C2 N3 C4 N9 179.4 180.0
C5 C4 N9 N3 179.6 179.9
N9 C4 C5 C6 180.8 180.0
N9 C4 C5 N7 0.9 0.0
C4 N9 C8 N7 1.0 0.0
C4 N9 C8 H8 181.0 180.1
C8 N9 C4 C1' 180.9 180.0
C4 N9 C1' C2' 128.5 93.5
C4 N9 C1' O4' 245.8 213.5
C4 N9 C1' H1' 9.3 330.0
C4 N3 C2 N1 359.7 359.9
C4 N3 C2 H2 179.7 179.9
C5 C4 N3 N9 180.5 180.1
N3 C4 C5 C6 0.4 360.0
N3 C4 C5 N7 180.5 180.0
N3 C4 N9 C8 179.3 180.0
N3 C4 N9 C1' 358.4 360.0
C2 N1 C6 C5 360.0 0.0
C6 C5 C4 N9 180.8 180.0
C6 C5 C4 N3 0.4 360.0
C4 C5 C6 N7 180.1 180.0
C6 C5 N7 C8 179.8 180.0
N1 C6 C5 N6 179.7 179.9
C5 C6 N1 CN 180.3 180.0
C5 C6 N6 H61 179.8 317.8
C5 C6 N6 H62 359.8 144.2
N7 C5 C4 N9 0.9 0.0
N7 C5 C4 N3 180.5 180.0
C4 C5 N7 C6 179.9 180.0
N7 C5 C6 N1 179.6 180.0
N7 C5 C6 N6 359.9 0.1
N9 C8 N7 C5 359.6 360.0
C5 N7 C8 H8 179.6 179.9
C6 N1 C2 H2 180.4 180.1
C2 N1 C6 CN 179.7 180.0
N1 C6 C5 N7 179.6 180.0
C5 C6 N1 N6 180.3 180.1
N1 C6 N6 H61 0.2 137.9
N1 C6 N6 H62 180.2 324.3
C6 N1 CN HN1 140.5 188.9
C6 N1 CN HN2 20.6 309.2
C6 N1 CN HN3 260.6 68.9
N6 C6 C5 N7 359.9 0.1
C5 C6 N6 N1 179.7 179.9
N6 C6 N1 CN 0.0 359.9
H61 N6 C6 H62 180.0 173.7
C8 N9 C4 N3 179.3 180.0
C4 N9 C8 C1' 179.1 180.0
C5 N7 C8 N9 359.6 360.0
N7 C8 N9 H8 180.0 180.0
C8 N9 C1' C2' 307.4 273.4
C8 N9 C1' O4' 64.6 33.4
C8 N9 C1' H1' 188.2 150.0
N9 C8 N7 H8 180.0 180.0
N7 C8 N9 C1' 181.9 180.1
N9 C8 H8 N7 180.0 179.9
H8 C8 N9 C1' 1.9 0.1
OP2 P OP1 O5' 231.7 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 271.7 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 175.9 180.0
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 128.2 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 309.4 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 226.5 126.8
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 143.5 175.4
O5' P OP3 HOP3   186.1
P O5' C5' C4' 211.9 180.0
P O5' C5' H5' 92.0 300.1
P O5' C5' H5'' 331.9 59.9
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 143.5 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 119.8 239.9
C4' C5' O5' H5'' 240.0 120.1
O5' C5' C4' O4' 300.7 61.8
O5' C5' C4' C3' 58.0 179.5
O5' C5' C4' H4' 177.8 304.8
H5' C5' O5' H5'' 120.1 240.2
C1' N9 C4 N3 358.4 360.0
C4 N9 C1' C8 181.1 180.0
C1' N9 C8 N7 181.9 180.1
C1' N9 C8 H8 1.9 0.1
N9 C1' C2' C3' 150.2 154.5
N9 C1' C2' H2' 27.5 37.8
N9 C1' C2' H2'' 270.2 276.7
C2' C1' N9 O4' 242.7 240.0
C2' C1' N9 H1' 119.2 123.5
C4' O4' C1' N9 221.9 218.2
O4' C1' N9 H1' 236.4 243.5
CN N1 C2 H2 0.0 0.1
C2 N1 CN C6 180.4 180.0
CN N1 C6 N6 0.0 359.9
HN1 CN N1 HN2 120.0 239.8
HN1 CN N1 HN3 240.0 120.1
HN2 CN N1 HN3 120.0 240.3
C6 N6 H61 H62 180.0 186.4
C6 N6 H62 H61 180.0 173.6
N1 CN HN1 HN2 240.0 120.8
N1 CN HN1 HN3 120.0 239.9
HN2 CN HN1 HN3 240.0 119.1
N1 CN HN2 HN1 120.0 240.1
N1 CN HN2 HN3 240.0 120.3
HN1 CN HN2 HN3 120.0 240.2
N1 CN HN3 HN1 240.0 119.6
N1 CN HN3 HN2 120.0 239.2
HN1 CN HN3 HN2 240.0 119.7
N9 C1' C2' O4' 118.1 121.8
N9 C1' C2' H1' 241.6 239.7
C3' C2' C1' H2' 122.6 116.7
C3' C2' C1' H2'' 240.0 237.8
C1' C2' C3' C4' 324.4 325.2
C1' C2' C3' O3' 81.0 81.3
C1' C2' C3' H3' 201.0 201.2
H2' C2' C1' H2'' 117.3 121.1
C4' O4' C1' C2' 344.5 342.7
O4' C1' C2' H1' 123.5 117.9
C1' C2' C3' H2' 237.4 243.0
C1' C2' C3' H2'' 120.0 120.4
C3' C2' C1' O4' 32.1 32.7
C3' C2' C1' H1' 268.5 274.8
H2' C2' C3' H2'' 242.6 237.5
C5' C4' C3' C2' 268.4 267.4
O4' C4' C3' C2' 27.4 25.9
C2' C3' C4' H4' 150.3 143.6
C4' C3' C2' O3' 243.4 243.8
C4' C3' C2' H3' 123.4 123.9
O3' C3' C2' H3' 239.9 240.1
C2' C3' O3' HO3' 319.3 294.7
C1' C2' H2' C3' 116.0 111.4
C1' C2' H2' H2'' 238.1 237.1
H2' C2' C1' O4' 269.4 276.0
H2' C2' C1' H1' 145.9 158.1
C3' C2' H2' H2'' 122.0 125.7
H2' C2' C3' C4' 87.1 82.2
H2' C2' C3' O3' 203.6 198.4
H2' C2' C3' H3' 323.7 318.3
C1' C2' H2'' C3' 246.0 245.4
C1' C2' H2'' H2' 123.0 122.1
H2'' C2' C1' O4' 152.1 154.9
H2'' C2' C1' H1' 28.5 37.0
C3' C2' H2'' H2' 237.0 236.7
H2'' C2' C3' C4' 204.4 204.8
H2'' C2' C3' O3' 321.0 320.9
H2'' C2' C3' H3' 81.1 80.8
O5' C5' C4' H5' 240.1 119.6
O5' C5' C4' H5'' 120.0 240.5
C2' C3' C4' C5' 268.4 267.4
H5' C5' C4' H5'' 239.9 120.9
O4' C4' C5' C3' 242.7 242.3
O4' C4' C5' H4' 122.9 117.0
C5' C4' O4' C1' 114.6 116.0
C3' C4' C5' H4' 240.3 234.7
C5' C4' C3' O3' 151.9 152.1
C5' C4' C3' H3' 31.8 31.2
O5' C5' H5' C4' 120.2 240.8
O5' C5' H5' H5'' 240.1 119.6
C4' C5' H5' H5'' 119.9 238.8
H5' C5' C4' O4' 60.6 302.2
H5' C5' C4' C3' 177.9 60.0
H5' C5' C4' H4' 297.6 185.3
O5' C5' H5'' C4' 239.7 119.2
O5' C5' H5'' H5' 119.9 240.4
C4' C5' H5'' H5' 240.2 121.2
H5'' C5' C4' O4' 180.7 181.3
H5'' C5' C4' C3' 298.0 299.1
H5'' C5' C4' H4' 57.7 64.3
N9 C1' O4' C4' 221.9 218.2
C2' C1' O4' C4' 344.5 342.7
C2' C3' C4' O4' 27.4 25.9
O4' C4' C5' H5' 60.6 302.2
O4' C4' C5' H5'' 180.7 181.3
C5' C4' O4' C3' 122.2 121.5
C5' C4' O4' H4' 241.9 242.0
C3' C4' O4' H4' 119.7 120.5
O4' C4' C3' O3' 270.9 270.6
O4' C4' C3' H3' 150.8 149.7
C4' O4' C1' H1' 103.6 103.1
C4' C3' C2' H2' 87.1 82.2
C4' C3' C2' H2'' 204.4 204.8
C2' C3' C4' O3' 116.5 115.3
C2' C3' C4' H3' 236.6 236.3
C3' C4' C5' H5' 177.9 60.0
C3' C4' C5' H5'' 298.0 299.1
C5' C4' C3' O4' 241.0 241.5
C5' C4' C3' H4' 118.1 123.8
O4' C4' C3' H4' 237.1 242.3
C3' C4' O4' C1' 352.4 354.5
O3' C3' C4' H3' 120.1 120.9
C4' C3' O3' HO3' 71.2 46.6
H4' C4' C5' H5' 297.6 185.3
H4' C4' C5' H5'' 57.7 64.3
C5' C4' H4' O4' 119.5 117.2
C5' C4' H4' C3' 237.3 234.3
O4' C4' H4' C3' 117.8 117.2
H4' C4' O4' C1' 232.7 234.0
H4' C4' C3' O3' 33.8 28.3
H4' C4' C3' H3' 273.7 267.4
N9 C1' O4' C2' 237.4 235.5
N9 C1' O4' H1' 118.3 115.2
O4' C1' C2' C3' 32.1 32.7
O4' C1' C2' H2' 269.4 276.0
O4' C1' C2' H2'' 152.1 154.9
C2' C1' O4' H1' 240.9 239.7
C1' O4' C4' C3' 352.4 354.5
C1' O4' C4' H4' 232.7 234.0
N9 C1' H1' C2' 123.3 125.1
N9 C1' H1' O4' 241.2 242.2
H1' C1' C2' C3' 268.5 274.8
H1' C1' C2' H2' 145.9 158.1
H1' C1' C2' H2'' 28.5 37.0
C2' C1' H1' O4' 118.0 117.1
O3' C3' C2' H2' 203.6 198.4
O3' C3' C2' H2'' 321.0 320.9
C2' C3' O3' C4' 248.0 248.1
C2' C3' O3' H3' 124.0 123.5
O3' C3' C4' H4' 33.8 28.3
C4' C3' O3' H3' 236.0 235.4
H3' C3' C2' H2' 323.7 318.3
H3' C3' C2' H2'' 81.1 80.8
C2' C3' H3' C4' 117.1 117.9
C2' C3' H3' O3' 238.6 239.8
H3' C3' C4' H4' 273.7 267.4
C4' C3' H3' O3' 121.5 121.9
H3' C3' O3' HO3' 195.2 171.2
HO3' O3' C3' H3' 195.2 171.2