PDB Chemical Component MA6

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for MA6

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C2 N3 1.327 1.316
C2 N1 1.336 1.321
C2 H2 1.080 1.080
C4 C5 1.386 1.404
C4 N9 1.372 1.372
C4 N3 1.344 1.329
C5 C6 1.416 1.405
C5 N7 1.395 1.354
P OP1 1.487 1.480
P OP2 1.482 1.610
P OP3 1.620 1.610
P O5' 1.624 1.610
OP2 HOP2 0.950 0.968
O5' C5' 1.451 1.429
C5' C4' 1.537 1.530
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.459 1.438
C4' C3' 1.544 1.541
C4' H4' 1.100 1.091
O4' C1' 1.430 1.444
C1' N9 1.461 1.464
C1' C2' 1.526 1.550
C1' H1' 1.100 1.090
N9 C8 1.369 1.363
N1 C6 1.354 1.329
C6 N6 1.352 1.384
N6 C9 1.468 1.469
N6 C10 1.474 1.469
C9 H91 1.100 1.090
C9 H92 1.099 1.090
C9 H93 1.100 1.090
C10 H101 1.100 1.091
C10 H102 1.100 1.089
C10 H103 1.100 1.090
N7 C8 1.314 1.302
C8 H8 1.080 1.080
C2' O2' 1.426 1.430
C2' C3' 1.544 1.548
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C3' O3' 1.453 1.429
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.967
OP3 HOP3 0.950 0.968

Bond Angles for MA6

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N3 C2 N1 128.9 122.4
N3 C2 H2 115.5 118.8
C2 N3 C4 110.4 120.7
N1 C2 H2 115.6 118.7
C2 N1 C6 120.1 121.2
C5 C4 N9 105.9 106.0
C5 C4 N3 127.4 119.1
C4 C5 C6 117.1 118.2
C4 C5 N7 110.1 107.2
N9 C4 N3 126.8 134.9
C4 N9 C1' 125.8 126.3
C4 N9 C8 106.4 107.5
C6 C5 N7 132.7 134.7
C5 C6 N1 116.1 118.5
C5 C6 N6 126.4 120.8
C5 N7 C8 104.2 109.5
OP1 P OP2 117.7 109.4
OP1 P OP3 106.0 109.5
OP1 P O5' 109.1 109.5
OP2 P OP3 109.3 109.5
OP2 P O5' 110.8 109.5
P OP2 HOP2 109.5 114.0
OP3 P O5' 102.9 109.5
P OP3 HOP3 109.5 114.0
P O5' C5' 129.2 123.0
O5' C5' C4' 121.4 109.5
O5' C5' H5' 106.4 109.5
O5' C5' H5'' 106.4 109.5
C4' C5' H5' 106.4 109.4
C4' C5' H5'' 106.4 109.5
C5' C4' O4' 113.0 109.9
C5' C4' C3' 119.3 109.9
C5' C4' H4' 106.9 109.9
H5' C5' H5'' 109.4 109.4
O4' C4' C3' 102.4 107.3
O4' C4' H4' 107.9 109.8
C4' O4' C1' 108.9 107.0
C3' C4' H4' 106.9 110.0
C4' C3' C2' 99.2 104.2
C4' C3' O3' 105.2 110.5
C4' C3' H3' 110.2 110.4
O4' C1' N9 108.6 110.7
O4' C1' C2' 106.2 103.5
O4' C1' H1' 109.3 110.5
N9 C1' C2' 115.8 110.6
N9 C1' H1' 108.9 110.6
C1' N9 C8 127.7 126.2
C2' C1' H1' 108.0 110.7
C1' C2' O2' 111.1 110.9
C1' C2' C3' 97.3 102.1
C1' C2' H2' 109.8 110.9
N9 C8 N7 113.3 109.9
N9 C8 H8 123.3 125.0
N1 C6 N6 117.5 120.7
C6 N6 C9 121.3 111.0
C6 N6 C10 123.7 111.0
C9 N6 C10 114.9 111.0
N6 C9 H91 109.5 109.4
N6 C9 H92 109.5 109.5
N6 C9 H93 109.4 109.5
N6 C10 H101 109.5 109.5
N6 C10 H102 109.5 109.5
N6 C10 H103 109.5 109.4
H91 C9 H92 109.5 109.5
H91 C9 H93 109.4 109.5
H92 C9 H93 109.5 109.5
H101 C10 H102 109.4 109.5
H101 C10 H103 109.5 109.4
H102 C10 H103 109.5 109.5
N7 C8 H8 123.4 125.0
O2' C2' C3' 116.8 110.9
O2' C2' H2' 111.3 110.8
C2' O2' HO2' 109.5 114.0
C3' C2' H2' 109.6 110.9
C2' C3' O3' 119.3 110.5
C2' C3' H3' 110.3 110.5
O3' C3' H3' 111.6 110.6
C3' O3' HO3' 109.5 114.0

Torsion Angles for MA6

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C2 N3 H2 180.0 180.3
N3 C2 N1 C6 360.0 359.9
C5 C4 N3 C2 359.8 360.0
N9 C4 N3 C2 178.7 180.0
N3 C2 N1 H2 180.0 179.7
N1 C2 N3 C4 359.7 0.1
C5 C6 N1 C2 0.7 0.1
C2 N1 C6 N6 180.9 180.0
N3 C2 H2 N1 180.0 180.3
H2 C2 N3 C4 179.8 179.7
H2 C2 N1 C6 180.0 180.2
C2 N3 C4 C5 359.8 360.0
N9 C4 C5 N3 180.9 180.0
C5 C4 N9 C1' 176.5 180.0
C5 C4 N9 C8 358.1 0.0
C6 C5 C4 N7 180.3 180.0
C4 C5 C6 N1 358.9 359.9
C4 C5 C6 N6 178.7 180.0
C4 C5 N7 C8 359.7 0.0
C2 N3 C4 N9 178.7 180.0
C5 C4 N9 N3 179.2 180.1
N9 C4 C5 C6 181.7 180.0
N9 C4 C5 N7 1.4 360.0
O4' C1' N9 C4 211.2 203.6
C4 N9 C1' C2' 91.9 89.5
C4 N9 C1' H1' 330.0 326.5
C1' N9 C4 C8 178.4 180.0
C4 N9 C8 N7 1.9 0.0
C4 N9 C8 H8 181.9 179.9
C4 N3 C2 N1 359.7 0.1
C4 N3 C2 H2 179.8 179.7
C5 C4 N3 N9 181.0 179.9
N3 C4 C5 C6 0.9 0.0
N3 C4 C5 N7 180.6 180.0
N3 C4 N9 C1' 357.3 359.9
N3 C4 N9 C8 178.9 180.0
C2 N1 C6 C5 0.7 0.1
C6 C5 C4 N9 181.7 180.0
C6 C5 C4 N3 0.9 0.0
C4 C5 C6 N7 179.6 180.0
C6 C5 N7 C8 179.3 180.0
N1 C6 C5 N6 180.2 180.0
C5 C6 N6 C9 359.8 180.0
C5 C6 N6 C10 182.6 303.9
N7 C5 C4 N9 1.4 360.0
N7 C5 C4 N3 180.6 180.0
C4 C5 N7 C6 180.4 180.0
N7 C5 C6 N1 179.3 180.0
N7 C5 C6 N6 359.1 0.0
N9 C8 N7 C5 359.0 360.0
C5 N7 C8 H8 179.0 180.1
OP2 P OP1 OP3 237.4 240.0
OP2 P OP1 O5' 127.3 120.0
OP1 P OP2 HOP2 0.0 60.1
OP3 P OP1 O5' 249.9 240.0
OP1 P OP3 HOP3 360.0 180.0
OP1 P O5' C5' 149.5 305.0
OP1 P OP2 OP3 120.9 120.0
OP1 P OP2 O5' 233.5 240.0
OP3 P OP2 O5' 112.7 120.0
OP2 P OP3 HOP3 127.7 299.9
OP2 P O5' C5' 18.4 185.0
OP1 P OP3 OP2 232.2 240.0
OP1 P OP3 O5' 114.5 120.0
OP2 P OP3 O5' 242.2 240.0
OP3 P OP2 HOP2 239.1 300.1
OP3 P O5' C5' 261.7 65.0
OP1 P O5' OP2 131.1 120.0
OP1 P O5' OP3 247.8 240.0
OP2 P O5' OP3 116.7 120.0
O5' P OP2 HOP2 126.5 180.1
O5' P OP3 HOP3 245.5 59.9
P O5' C5' C4' 19.6 180.0
P O5' C5' H5' 141.3 300.0
P O5' C5' H5'' 257.9 59.9
HOP2 OP2 P OP3 239.1 300.1
HOP2 OP2 P O5' 126.5 180.1
C4' C5' O5' H5' 238.3 240.0
C4' C5' O5' H5'' 121.7 120.1
O5' C5' C4' O4' 62.0 66.4
O5' C5' C4' C3' 182.3 184.3
O5' C5' C4' H4' 303.5 305.4
H5' C5' O5' H5'' 243.4 240.1
O5' C5' C4' H5' 121.7 120.0
O5' C5' C4' H5'' 238.3 239.9
H5' C5' C4' H5'' 116.7 119.9
O4' C4' C5' C3' 239.7 242.1
O4' C4' C5' H4' 118.5 120.9
C5' C4' O4' C1' 110.6 145.9
C3' C4' C5' H4' 238.8 238.8
C5' C4' C3' C2' 277.3 238.5
C5' C4' C3' O3' 153.4 119.8
C5' C4' C3' H3' 33.0 357.2
O5' C5' H5' C4' 229.2 240.0
O5' C5' H5' H5'' 114.6 120.0
C4' C5' H5' H5'' 245.4 240.0
H5' C5' C4' O4' 300.3 306.4
H5' C5' C4' C3' 60.6 64.3
H5' C5' C4' H4' 181.8 185.4
O5' C5' H5'' C4' 130.8 120.1
O5' C5' H5'' H5' 245.4 240.0
C4' C5' H5'' H5' 114.6 119.9
H5'' C5' C4' O4' 183.7 186.4
H5'' C5' C4' C3' 303.9 304.3
H5'' C5' C4' H4' 65.2 65.5
O4' C4' C5' H5' 300.3 306.4
O4' C4' C5' H5'' 183.7 186.4
C5' C4' O4' C3' 129.5 119.5
C5' C4' O4' H4' 242.0 239.0
C3' C4' O4' H4' 112.5 119.5
O4' C4' C3' C2' 42.8 358.0
O4' C4' C3' O3' 278.9 239.3
O4' C4' C3' H3' 158.5 116.7
C4' O4' C1' N9 221.6 201.5
C4' O4' C1' C2' 346.8 320.0
C4' O4' C1' H1' 103.0 78.6
C3' C4' C5' H5' 60.6 64.3
C3' C4' C5' H5'' 303.9 304.3
C5' C4' C3' O4' 234.5 240.5
C5' C4' C3' H4' 121.3 121.1
O4' C4' C3' H4' 246.8 240.6
C3' C4' O4' C1' 341.1 26.4
C1' C2' C3' C4' 311.1 339.1
O2' C2' C3' C4' 192.9 220.9
C4' C3' C2' H2' 65.2 97.3
C2' C3' C4' O3' 123.9 118.7
C2' C3' C4' H3' 244.3 241.3
O3' C3' C4' H3' 120.4 122.6
C4' C3' O3' HO3' 180.0 180.0
H4' C4' C5' H5' 181.8 185.4
H4' C4' C5' H5'' 65.2 65.5
C5' C4' H4' O4' 121.8 121.0
C5' C4' H4' C3' 231.2 238.9
O4' C4' H4' C3' 109.4 117.9
H4' C4' O4' C1' 228.6 266.9
H4' C4' C3' C2' 156.1 117.4
H4' C4' C3' O3' 32.2 358.7
H4' C4' C3' H3' 271.8 236.1
C4 N9 C1' O4' 211.2 203.6
C1' O4' C4' C3' 341.1 26.4
C1' O4' C4' H4' 228.6 266.9
N9 C1' O4' C2' 234.8 241.5
N9 C1' O4' H1' 118.6 122.9
O4' C1' N9 C8 29.3 23.6
C2' C1' O4' H1' 243.8 241.4
O4' C1' C2' O2' 161.8 155.2
O4' C1' C2' C3' 39.3 37.0
O4' C1' C2' H2' 285.3 278.8
C1' N9 C4 N3 357.3 359.9
C4 N9 C1' C8 181.9 180.0
O4' C1' N9 C2' 119.3 114.1
O4' C1' N9 H1' 241.2 237.2
C2' C1' N9 H1' 121.9 123.0
N9 C1' C2' O2' 282.4 273.7
N9 C1' C2' C3' 159.9 155.6
N9 C1' C2' H2' 46.0 37.3
C1' N9 C8 N7 183.5 180.0
C1' N9 C8 H8 3.5 359.9
C4' C3' C2' C1' 311.1 339.1
O4' C1' C2' N9 239.4 241.4
O4' C1' C2' H1' 117.1 118.5
N9 C1' C2' H1' 237.7 237.0
C2' C1' N9 C8 270.0 269.5
O2' C2' C1' C3' 122.5 118.2
O2' C2' C1' H2' 236.4 236.4
C1' C2' O2' HO2' 180.0 180.0
C3' C2' C1' H2' 113.9 118.2
C1' C2' C3' O3' 64.4 97.8
C1' C2' C3' H3' 195.4 220.5
O4' C1' H1' N9 118.4 122.9
O4' C1' H1' C2' 244.9 245.9
N9 C1' H1' C2' 126.5 123.0
H1' C1' N9 C8 148.1 146.4
H1' C1' C2' O2' 44.7 36.7
H1' C1' C2' C3' 282.2 278.5
H1' C1' C2' H2' 168.3 160.3
C8 N9 C4 N3 178.9 180.0
C4 N9 C8 C1' 178.4 180.0
C5 N7 C8 N9 359.0 360.0
C8 N9 C1' C2' 270.0 269.5
C8 N9 C1' H1' 148.1 146.4
N7 C8 N9 H8 180.0 180.1
C6 N1 C2 H2 180.0 180.2
N1 C6 C5 N7 179.3 180.0
C5 C6 N1 N6 179.8 180.0
N1 C6 N6 C9 179.6 0.0
N1 C6 N6 C10 2.3 124.0
N6 C6 C5 N7 359.1 0.0
C5 C6 N6 N1 180.2 180.0
C9 N6 C6 C10 177.3 236.0
C6 N6 C9 H91 180.0 60.0
C6 N6 C9 H92 300.0 180.0
C6 N6 C9 H93 60.0 300.0
C6 N6 C10 H101 180.0 59.9
C6 N6 C10 H102 300.0 180.0
C6 N6 C10 H103 60.0 300.0
C6 N6 C9 C10 182.5 124.0
C9 N6 C10 H101 2.6 183.9
C9 N6 C10 H102 122.5 304.0
C9 N6 C10 H103 242.6 64.0
H91 C9 N6 H92 240.0 240.0
H91 C9 N6 H93 120.0 120.0
H92 C9 N6 H93 240.0 240.0
C6 N6 C10 C9 177.4 236.0
C10 N6 C9 H91 357.5 296.1
C10 N6 C9 H92 117.5 56.0
C10 N6 C9 H93 237.5 176.0
H101 C10 N6 H102 240.0 239.9
H101 C10 N6 H103 120.0 119.9
H102 C10 N6 H103 240.0 240.0
H91 C9 N6 C10 357.5 296.1
N6 C9 H91 H92 120.0 120.0
N6 C9 H91 H93 240.0 240.0
H92 C9 H91 H93 120.0 120.0
H92 C9 N6 C10 117.5 56.0
N6 C9 H92 H91 240.0 240.1
N6 C9 H92 H93 120.0 120.0
H91 C9 H92 H93 240.0 239.9
H93 C9 N6 C10 237.5 176.0
N6 C9 H93 H91 120.0 120.0
N6 C9 H93 H92 240.0 240.0
H91 C9 H93 H92 120.0 120.0
N6 C10 H101 H102 120.0 120.1
N6 C10 H101 H103 240.0 240.1
H102 C10 H101 H103 120.0 120.0
N6 C10 H102 H101 240.0 240.0
N6 C10 H102 H103 120.0 120.0
H101 C10 H102 H103 240.0 240.0
N6 C10 H103 H101 120.0 120.0
N6 C10 H103 H102 240.0 240.0
H101 C10 H103 H102 120.0 120.0
N9 C8 N7 H8 180.0 179.9
N9 C8 H8 N7 180.0 180.1
C4' C3' C2' O2' 192.9 220.9
O2' C2' C1' H1' 44.7 36.7
C1' C2' O2' C3' 249.6 247.3
C1' C2' O2' H2' 122.7 123.6
C3' C2' O2' H2' 233.1 236.3
O2' C2' C3' O3' 306.3 339.6
O2' C2' C3' H3' 77.3 102.3
C2' C3' C4' H4' 156.1 117.4
C4' C3' C2' O3' 246.7 241.3
C4' C3' C2' H3' 115.7 118.6
C3' C2' C1' H1' 282.2 278.5
C1' C2' C3' O2' 118.2 118.2
C1' C2' C3' H2' 245.9 241.8
O2' C2' C3' H2' 127.7 123.6
C3' C2' O2' HO2' 290.4 292.7
O3' C3' C2' H3' 229.0 237.3
C2' C3' O3' HO3' 70.0 65.3
H2' C2' C1' H1' 168.3 160.3
C1' C2' H2' O2' 236.5 236.3
C1' C2' H2' C3' 105.8 112.7
O2' C2' H2' C3' 229.3 236.4
H2' C2' O2' HO2' 57.2 56.3
H2' C2' C3' O3' 178.5 216.0
H2' C2' C3' H3' 309.6 338.7
HO2' O2' C2' C3' 290.4 292.7
HO2' O2' C2' H2' 57.2 56.3
O3' C3' C4' H4' 32.2 358.7
C4' C3' O3' C2' 110.0 114.8
C4' C3' O3' H3' 240.5 237.4
O3' C3' C2' H2' 178.5 216.0
C2' C3' O3' H3' 130.4 122.7
H3' C3' C4' H4' 271.8 236.1
C4' C3' H3' C2' 251.5 245.3
C4' C3' H3' O3' 116.5 122.6
H3' C3' C2' H2' 309.6 338.7
C2' C3' H3' O3' 225.0 237.3
H3' C3' O3' HO3' 299.5 302.6
HO3' O3' C3' H3' 299.5 302.6
HOP3 OP3 P O5' 245.5 59.9