PDB Chemical Component M9K
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M9K
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CL |
C12 |
1.762 |
1.736 |
| S14 |
C12 |
1.695 |
1.755 |
| S14 |
C06 |
1.704 |
1.757 |
| C12 |
C08 |
1.382 |
1.325 |
| O18 |
C02 |
1.260 |
1.209 |
| C02 |
O01 |
1.271 |
1.342 |
| C02 |
C03 |
1.529 |
1.506 |
| S04 |
C03 |
1.827 |
1.811 |
| S04 |
C05 |
1.801 |
1.762 |
| C08 |
C09 |
1.515 |
1.507 |
| C08 |
C07 |
1.428 |
1.403 |
| C06 |
C05 |
1.370 |
1.404 |
| C06 |
C07 |
1.389 |
1.397 |
| C09 |
C11 |
1.527 |
1.530 |
| C09 |
C10 |
1.517 |
1.530 |
| C05 |
N17 |
1.331 |
1.329 |
| C07 |
N15 |
1.338 |
1.354 |
| C11 |
C10 |
1.532 |
1.530 |
| N17 |
C16 |
1.332 |
1.321 |
| N15 |
C16 |
1.313 |
1.309 |
| C10 |
H1 |
1.100 |
1.091 |
| C10 |
H2 |
1.100 |
1.090 |
| C03 |
H3 |
1.100 |
1.090 |
| C03 |
H4 |
1.100 |
1.090 |
| C09 |
H5 |
1.100 |
1.091 |
| C11 |
H6 |
1.100 |
1.090 |
| C11 |
H7 |
1.100 |
1.090 |
| C16 |
H8 |
1.080 |
1.081 |
| O01 |
H9 |
0.950 |
0.967 |
Bond Angles for M9K
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
C02 |
O01 |
121.1 |
120.0 |
| C02 |
O01 |
H9 |
109.5 |
117.1 |
| C02 |
C03 |
H3 |
110.2 |
109.6 |
| C02 |
C03 |
H4 |
110.2 |
109.5 |
| S04 |
C03 |
H3 |
110.2 |
109.4 |
| S04 |
C03 |
H4 |
110.1 |
109.5 |
| C08 |
C09 |
C11 |
134.3 |
117.5 |
| C08 |
C09 |
H5 |
111.0 |
115.5 |
| C08 |
C07 |
N15 |
127.9 |
129.7 |
| C06 |
C05 |
N17 |
121.0 |
118.8 |
| C06 |
C07 |
N15 |
121.1 |
117.8 |
| C11 |
C09 |
H5 |
110.9 |
117.5 |
| C09 |
C11 |
H6 |
120.1 |
117.5 |
| C09 |
C11 |
H7 |
120.1 |
117.5 |
| C09 |
C10 |
H1 |
120.0 |
117.5 |
| C09 |
C10 |
H2 |
120.0 |
117.5 |
| C05 |
N17 |
C16 |
120.9 |
120.7 |
| C07 |
N15 |
C16 |
120.4 |
121.1 |
| C11 |
C10 |
H1 |
120.0 |
117.5 |
| C11 |
C10 |
H2 |
120.0 |
117.5 |
| N17 |
C16 |
H8 |
119.7 |
118.7 |
| N15 |
C16 |
H8 |
119.7 |
118.7 |
| H1 |
C10 |
H2 |
109.5 |
115.5 |
| H3 |
C03 |
H4 |
109.5 |
109.5 |
| H6 |
C11 |
H7 |
109.5 |
115.5 |
Torsion Angles for M9K
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C08 |
C09 |
H5 |
20.4 |
340.7 |
| C12 |
C08 |
C07 |
N15 |
179.8 |
180.0 |
| O18 |
C02 |
O01 |
H9 |
0.0 |
0.0 |
| O18 |
C02 |
C03 |
H3 |
119.5 |
120.0 |
| O18 |
C02 |
C03 |
H4 |
240.4 |
240.0 |
| O01 |
C02 |
C03 |
H3 |
300.8 |
300.0 |
| O01 |
C02 |
C03 |
H4 |
61.7 |
60.1 |
| C03 |
C02 |
O01 |
H9 |
178.6 |
180.0 |
| S04 |
C03 |
C02 |
H3 |
240.4 |
240.0 |
| S04 |
C03 |
C02 |
H4 |
119.5 |
120.0 |
| H3 |
C03 |
C02 |
H4 |
239.1 |
240.0 |
| C02 |
C03 |
S04 |
H3 |
119.6 |
120.1 |
| C02 |
C03 |
S04 |
H4 |
240.5 |
240.0 |
| H3 |
C03 |
S04 |
H4 |
120.9 |
120.0 |
| C05 |
S04 |
C03 |
H3 |
63.9 |
60.0 |
| C05 |
S04 |
C03 |
H4 |
303.0 |
300.0 |
| C09 |
C08 |
C07 |
N15 |
0.2 |
360.0 |
| C11 |
C09 |
C08 |
H5 |
155.2 |
145.6 |
| C08 |
C09 |
C11 |
H6 |
211.2 |
0.0 |
| C08 |
C09 |
C11 |
H7 |
352.5 |
215.0 |
| C08 |
C09 |
C10 |
H1 |
342.1 |
360.0 |
| C08 |
C09 |
C10 |
H2 |
123.1 |
145.0 |
| C06 |
C07 |
C08 |
N15 |
179.9 |
180.0 |
| C08 |
C07 |
N15 |
C16 |
179.2 |
180.0 |
| C06 |
C05 |
N17 |
C16 |
359.6 |
0.0 |
| C08 |
C07 |
C06 |
N15 |
180.1 |
180.0 |
| C07 |
C06 |
C05 |
N17 |
0.3 |
0.0 |
| C06 |
C07 |
N15 |
C16 |
359.3 |
360.0 |
| C08 |
C09 |
C11 |
H5 |
204.8 |
215.0 |
| C11 |
C09 |
C10 |
H1 |
109.5 |
107.5 |
| C11 |
C09 |
C10 |
H2 |
250.5 |
252.5 |
| C09 |
C11 |
C10 |
H1 |
250.5 |
252.5 |
| C09 |
C11 |
C10 |
H2 |
109.5 |
107.5 |
| H6 |
C11 |
C09 |
H7 |
218.6 |
145.0 |
| C11 |
C10 |
C09 |
H1 |
250.5 |
252.5 |
| C11 |
C10 |
C09 |
H2 |
109.5 |
107.5 |
| H1 |
C10 |
C09 |
H2 |
219.0 |
215.0 |
| C05 |
N17 |
C16 |
H8 |
180.0 |
180.0 |
| C07 |
N15 |
C16 |
H8 |
180.6 |
180.0 |
| C09 |
C10 |
C11 |
H1 |
109.5 |
107.5 |
| C09 |
C10 |
C11 |
H2 |
250.5 |
252.5 |
| H1 |
C10 |
C11 |
H2 |
141.0 |
145.0 |
| N15 |
C16 |
N17 |
H8 |
180.0 |
180.0 |
| C05 |
N17 |
C16 |
N15 |
360.0 |
360.0 |
| N17 |
C16 |
N15 |
H8 |
180.0 |
180.0 |
| C09 |
C10 |
H1 |
H2 |
144.7 |
145.7 |
| C11 |
C10 |
H1 |
H2 |
215.3 |
214.3 |
| C09 |
C10 |
H2 |
H1 |
215.3 |
214.3 |
| C11 |
C10 |
H2 |
H1 |
144.7 |
145.6 |
| H3 |
C03 |
C02 |
O01 |
300.8 |
300.0 |
| C02 |
C03 |
H3 |
H4 |
121.3 |
120.0 |
| S04 |
C03 |
H3 |
H4 |
238.7 |
240.0 |
| H4 |
C03 |
C02 |
O01 |
61.7 |
60.1 |
| C02 |
C03 |
H4 |
H3 |
238.7 |
239.9 |
| S04 |
C03 |
H4 |
H3 |
121.3 |
120.0 |
| C08 |
C09 |
H5 |
C11 |
161.2 |
145.7 |
| H5 |
C09 |
C11 |
H6 |
6.4 |
145.0 |
| H5 |
C09 |
C11 |
H7 |
147.7 |
360.0 |
| H5 |
C09 |
C10 |
H1 |
212.3 |
214.9 |
| H5 |
C09 |
C10 |
H2 |
353.2 |
360.0 |
| H6 |
C11 |
C09 |
H5 |
6.4 |
145.0 |
| C09 |
C11 |
H6 |
H7 |
145.0 |
214.3 |
| H6 |
C11 |
C10 |
H1 |
141.2 |
0.0 |
| H6 |
C11 |
C10 |
H2 |
0.2 |
215.0 |
| H7 |
C11 |
C09 |
H5 |
147.7 |
360.0 |
| C09 |
C11 |
H7 |
H6 |
215.0 |
145.7 |
| H7 |
C11 |
C10 |
H1 |
359.8 |
145.0 |
| H7 |
C11 |
C10 |
H2 |
218.8 |
0.0 |