PDB Chemical Component M8S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M8S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C7 C6 1.500 1.542
C7 C8 1.508 1.505
C6 C5 1.508 1.456
C8 C9 1.508 1.540
C5 C4 1.516 1.544
C9 C3 1.517 1.541
N10 C3 1.445 1.473
N10 C26 1.373 1.345
C3 C4 1.499 1.504
C3 C2 1.483 1.515
O27 C26 1.232 1.215
C26 N11 1.388 1.338
C2 N11 1.382 1.348
C2 O1 1.224 1.212
N11 C12 1.453 1.465
C12 C13 1.545 1.507
O25 C13 1.227 1.213
C13 N14 1.394 1.348
N14 C15 1.442 1.399
C15 C16 1.386 1.388
C15 C24 1.366 1.389
C16 C17 1.399 1.381
C24 C23 1.371 1.382
C17 C18 1.371 1.382
C23 C18 1.363 1.382
C18 S19 1.773 1.763
N21 S19 1.664 1.656
O22 S19 1.468 1.421
S19 O20 1.430 1.421
C16 H1 1.079 1.081
C24 H2 1.080 1.080
C17 H3 1.080 1.080
C23 H4 1.080 1.080
C6 H5 1.100 1.090
C6 H6 1.100 1.089
C7 H7 1.100 1.090
C7 H8 1.099 1.089
C5 H9 1.100 1.090
C5 H10 1.100 1.090
C8 H11 1.100 1.090
C8 H12 1.100 1.090
C4 H13 1.100 1.089
C4 H14 1.100 1.089
C9 H15 1.100 1.090
C9 H16 1.100 1.090
C12 H17 1.100 1.090
C12 H18 1.100 1.089
N10 H19 1.000 0.970
N21 H20 1.000 0.970
N21 H21 1.000 0.970
N14 H22 1.000 0.970

Bond Angles for M8S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C7 C6 C5 109.9 112.6
C7 C6 H5 109.3 108.8
C7 C6 H6 109.4 108.8
C7 C8 C9 115.4 112.3
C8 C7 H7 107.8 109.6
C8 C7 H8 107.8 109.6
C7 C8 H11 108.0 108.9
C7 C8 H12 108.0 108.9
C6 C5 C4 113.9 112.3
C5 C6 H5 109.4 108.9
C5 C6 H6 109.4 108.9
C6 C5 H9 108.3 108.9
C6 C5 H10 108.4 109.0
C8 C9 C3 117.9 112.7
C9 C8 H11 107.9 109.0
C9 C8 H12 108.0 108.9
C8 C9 H15 107.3 108.8
C8 C9 H16 107.3 108.8
C4 C5 H9 108.4 108.9
C4 C5 H10 108.3 108.9
C5 C4 H13 107.6 109.6
C5 C4 H14 107.6 109.6
C3 C9 H15 107.3 108.9
C3 C9 H16 107.3 108.8
N10 C26 N11 104.5 112.5
C3 C4 H13 107.6 109.6
C3 C4 H14 107.6 109.6
C3 C2 N11 109.5 105.6
C3 C2 O1 123.5 127.1
C2 N11 C26 110.9 111.6
C26 N11 C12 121.4 124.2
N11 C2 O1 126.9 127.2
C2 N11 C12 125.7 124.2
N11 C12 H17 109.2 109.4
N11 C12 H18 109.2 109.5
C12 C13 N14 112.5 120.0
C13 N14 H22 116.8 120.0
C15 C16 H1 119.7 120.0
C15 C24 H2 120.8 120.0
C16 C17 C18 118.1 120.0
C17 C16 H1 119.7 120.1
C16 C17 H3 121.0 119.9
C24 C23 C18 122.3 120.1
C23 C24 H2 120.7 120.1
C24 C23 H4 118.9 119.9
C17 C18 C23 120.3 120.2
C17 C18 S19 120.7 119.9
C18 C17 H3 120.9 120.0
C23 C18 S19 119.0 119.9
C18 C23 H4 118.8 120.0
C18 S19 N21 110.1 107.2
C18 S19 O22 103.1 106.4
C18 S19 O20 111.5 106.4
N21 S19 O22 112.9 106.4
N21 S19 O20 107.8 106.3
S19 N21 H20 109.5 120.1
S19 N21 H21 109.5 120.0
H5 C6 H6 109.5 108.8
H7 C7 H8 109.5 109.8
H9 C5 H10 109.5 108.8
H11 C8 H12 109.4 108.8
H13 C4 H14 109.5 109.8
H15 C9 H16 109.5 108.7
H17 C12 H18 109.5 109.5
H20 N21 H21 109.4 119.9

Torsion Angles for M8S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C7 C6 C5 C4 75.8 61.9
C5 C6 C7 H5 239.9 239.2
C5 C6 C7 H6 120.1 120.8
C7 C6 C5 H9 196.5 182.6
C7 C6 C5 H10 315.2 301.2
H5 C6 C7 H6 240.1 241.6
C8 C7 C6 C5 298.8 279.6
C8 C7 C6 H5 58.9 40.4
C8 C7 C6 H6 178.8 158.9
C7 C8 C9 C3 280.9 318.4
C9 C8 C7 H11 239.1 239.2
C9 C8 C7 H12 120.9 120.7
C7 C8 C9 H15 42.1 79.3
C7 C8 C9 H16 159.7 197.6
H7 C7 C8 H8 118.1 120.5
H11 C8 C7 H12 241.8 241.5
C7 C6 C5 H5 120.0 120.8
C7 C6 C5 H6 239.9 239.3
C4 C5 C6 H9 239.3 239.3
C4 C5 C6 H10 120.7 120.7
C6 C5 C4 H13 31.1 40.3
C6 C5 C4 H14 149.1 161.0
H5 C6 C5 H6 119.9 118.5
H9 C5 C6 H10 241.3 241.5
C9 C8 C7 H7 314.9 334.4
C9 C8 C7 H8 196.8 213.9
C7 C8 C9 H11 120.9 120.7
C7 C8 C9 H12 239.1 239.3
C3 C9 C8 H15 238.8 239.2
C3 C9 C8 H16 121.2 120.9
H11 C8 C9 H12 118.2 118.6
H15 C9 C8 H16 242.4 241.7
C4 C5 C6 H5 315.8 301.1
C4 C5 C6 H6 195.9 182.6
C6 C5 C4 H9 120.7 120.8
C6 C5 C4 H10 239.3 239.2
C3 C4 C5 H13 239.0 240.3
C3 C4 C5 H14 121.1 119.7
H9 C5 C4 H10 118.7 118.5
H13 C4 C5 H14 242.1 239.4
C3 C9 C8 H11 160.0 197.7
C3 C9 C8 H12 41.8 79.1
C8 C9 C3 H15 121.2 120.8
C8 C9 C3 H16 238.8 239.1
C9 C3 C4 H13 281.5 334.3
C9 C3 C4 H14 163.6 213.7
C9 C3 C2 N11 245.5 244.1
C9 C3 C2 O1 62.1 63.9
H15 C9 C3 H16 117.6 118.3
N10 C3 C9 H15 30.3 320.8
N10 C3 C9 H16 272.7 202.5
C3 N10 C26 N11 358.3 0.0
N10 C3 C4 H13 154.5 212.0
N10 C3 C4 H14 36.6 91.3
N10 C3 C2 N11 5.6 359.9
N10 C3 C2 O1 182.2 179.7
C2 N11 C26 N10 5.5 359.9
N10 C26 N11 C12 170.7 180.2
C8 C9 C3 C4 29.3 318.1
C3 C4 C5 H9 149.5 159.9
C3 C4 C5 H10 30.8 41.4
C5 C4 C3 H13 121.0 119.7
C5 C4 C3 H14 238.9 240.3
C4 C3 C2 N11 115.8 119.0
C4 C3 C2 O1 292.4 298.8
H13 C4 C3 H14 117.9 120.6
C3 C2 N11 C26 352.6 0.1
N11 C2 C3 O1 183.4 180.2
C3 C2 N11 C12 188.3 179.8
C26 N11 C2 O1 176.2 180.3
C2 N11 C26 C12 194.9 179.7
C26 N11 C12 H17 53.9 149.7
C26 N11 C12 H18 173.6 29.7
N10 C26 N11 C2 5.5 359.9
C3 C2 N11 O1 176.5 179.8
C26 N11 C2 C12 164.3 180.3
C2 N11 C12 H17 216.7 330.0
C2 N11 C12 H18 336.4 210.0
C3 C2 O1 N11 184.0 180.3
O1 C2 N11 C26 176.2 180.3
O1 C2 N11 C12 11.9 0.0
C2 N11 C12 C26 162.8 180.3
C12 N11 C2 O1 11.9 0.0
N11 C12 C13 N14 155.3 180.0
H17 C12 N11 H18 240.4 120.0
C26 N11 C12 C13 293.7 269.7
C2 N11 C12 C13 96.5 90.0
C12 C13 N14 H22 8.4 5.3
O25 C13 N14 H22 188.0 185.3
N14 C15 C16 H1 1.6 0.2
N14 C15 C24 H2 359.0 0.4
C15 C16 C17 C18 358.4 0.3
C17 C16 C15 H1 180.0 179.7
C15 C16 C17 H3 178.4 180.2
C24 C15 C16 H1 182.0 180.3
C15 C24 C23 C18 0.4 0.8
C23 C24 C15 H2 180.0 179.2
C15 C24 C23 H4 180.4 180.8
C15 C16 C17 H1 180.0 180.3
C16 C17 C18 C23 0.6 360.0
C16 C17 C18 S19 179.2 179.9
C18 C17 C16 H3 180.0 180.1
C15 C24 C23 H2 180.0 180.8
C17 C18 C23 C24 0.0 359.5
C24 C23 C18 S19 181.4 179.5
C18 C23 C24 H4 180.0 180.0
C18 C17 C16 H1 178.4 180.0
C16 C17 C18 H3 180.0 179.9
C24 C23 C18 C17 0.0 359.5
C23 C18 C17 S19 181.4 180.0
C17 C18 C23 H4 180.0 179.5
C17 C18 S19 N21 317.1 90.0
C17 C18 S19 O22 196.3 336.5
C17 C18 S19 O20 76.7 203.5
C18 C23 C24 H2 180.4 180.0
C24 C23 C18 H4 180.0 180.0
C17 C18 C23 S19 178.6 180.0
C23 C18 C17 H3 180.6 180.0
C23 C18 S19 N21 135.7 270.0
C23 C18 S19 O22 14.9 156.5
C23 C18 S19 O20 255.3 23.5
C17 C18 S19 C23 181.4 180.0
S19 C18 C17 H3 359.2 360.0
S19 C18 C23 H4 1.4 359.5
N21 S19 C18 O22 120.8 113.5
N21 S19 C18 O20 240.4 246.5
C18 S19 N21 H20 180.0 359.9
C18 S19 N21 H21 300.0 180.0
C18 S19 N21 O22 245.3 246.4
C18 S19 N21 O20 121.8 113.5
H20 N21 S19 H21 240.0 179.9
C18 S19 O22 N21 118.8 114.1
C18 S19 O22 O20 240.3 237.0
N21 S19 O22 O20 121.5 122.9
O22 S19 N21 H20 294.7 113.5
O22 S19 N21 H21 54.7 293.6
C18 S19 O20 N21 239.1 246.0
C18 S19 O20 O22 114.6 123.0
N21 S19 O20 O22 235.6 237.1
O20 S19 N21 H20 58.2 246.4
O20 S19 N21 H21 178.2 66.6
H1 C16 C17 C18 178.4 180.0
H1 C16 C17 H3 358.4 359.9
H2 C24 C23 C18 180.4 180.0
H2 C24 C23 H4 0.4 360.0
C16 C17 H3 C18 180.0 180.1
H3 C17 C16 H1 358.4 359.9
H3 C17 C18 C23 180.6 180.0
H3 C17 C18 S19 359.2 360.0
C24 C23 H4 C18 180.0 180.0
H4 C23 C24 H2 0.4 360.0
H4 C23 C18 S19 1.4 359.5
C7 C6 H5 C5 239.6 236.9
C7 C6 H5 H6 119.8 118.4
H5 C6 C5 C4 315.8 301.1
C5 C6 H5 H6 240.2 241.5
H5 C6 C5 H9 76.4 61.8
H5 C6 C5 H10 195.1 180.4
C7 C6 H6 C5 120.4 123.1
C7 C6 H6 H5 240.2 241.6
H6 C6 C5 C4 195.9 182.6
C5 C6 H6 H5 119.8 118.5
H6 C6 C5 H9 316.5 303.4
H6 C6 C5 H10 75.2 61.9
H7 C7 C6 C5 59.8 39.3
H7 C7 C6 H5 179.9 160.1
H7 C7 C6 H6 299.7 278.5
H7 C7 C8 C9 314.9 334.4
C8 C7 H7 H8 243.0 239.6
H7 C7 C8 H11 75.8 95.2
H7 C7 C8 H12 194.0 213.7
H8 C7 C6 C5 177.9 159.9
H8 C7 C6 H5 298.0 280.7
H8 C7 C6 H6 57.8 39.1
H8 C7 C8 C9 196.8 213.9
C8 C7 H8 H7 117.0 120.4
H8 C7 C8 H11 317.7 334.7
H8 C7 C8 H12 75.9 93.2
C6 C5 H9 C4 235.9 237.2
H9 C5 C6 H5 76.4 61.8
H9 C5 C6 H6 316.5 303.4
C6 C5 H9 H10 118.0 118.7
C4 C5 H9 H10 242.0 241.4
H9 C5 C4 H13 270.5 279.6
H9 C5 C4 H14 28.4 40.2
C6 C5 H10 C4 124.1 122.8
H10 C5 C6 H5 195.1 180.4
H10 C5 C6 H6 75.2 61.9
C6 C5 H10 H9 242.0 241.3
C4 C5 H10 H9 118.0 118.6
H10 C5 C4 H13 151.8 161.1
H10 C5 C4 H14 269.7 281.7
C7 C8 H11 C9 234.6 237.2
H11 C8 C7 H7 75.8 95.2
H11 C8 C7 H8 317.7 334.7
C7 C8 H11 H12 117.3 118.6
H11 C8 C9 C3 160.0 197.7
C9 C8 H11 H12 242.8 241.4
H11 C8 C9 H15 281.2 318.5
H11 C8 C9 H16 38.8 76.8
C7 C8 H12 C9 125.5 122.8
H12 C8 C7 H7 194.0 213.7
H12 C8 C7 H8 75.9 93.2
C7 C8 H12 H11 242.7 241.4
H12 C8 C9 C3 41.8 79.1
C9 C8 H12 H11 117.2 118.7
H12 C8 C9 H15 163.0 199.9
H12 C8 C9 H16 280.6 318.2
H13 C4 C5 H9 270.5 279.6
H13 C4 C5 H10 151.8 161.1
C5 C4 H13 H14 116.7 120.5
C3 C4 H13 H14 243.3 239.5
H14 C4 C5 H9 28.4 40.2
H14 C4 C5 H10 269.7 281.7
C5 C4 H14 H13 243.3 239.5
C3 C4 H14 H13 116.7 120.5
C8 C9 H15 C3 232.3 236.8
H15 C9 C8 H11 281.2 318.5
H15 C9 C8 H12 163.0 199.9
C8 C9 H15 H16 116.2 118.4
C3 C9 H15 H16 243.9 241.6
C8 C9 H16 C3 127.7 123.2
H16 C9 C8 H11 38.8 76.8
H16 C9 C8 H12 280.6 318.2
C8 C9 H16 H15 243.8 241.7
C3 C9 H16 H15 116.1 118.4
N11 C12 H17 H18 119.5 240.0
H17 C12 C13 N14 35.1 299.9
N11 C12 H18 H17 240.5 120.0
H18 C12 C13 N14 275.4 60.0
H19 N10 C26 N11 178.2 180.0
H20 N21 S19 O22 294.7 113.5
H20 N21 S19 O20 58.2 246.4
S19 N21 H20 H21 120.0 180.1
H21 N21 S19 O22 54.7 293.6
H21 N21 S19 O20 178.2 66.6
S19 N21 H21 H20 239.9 179.9