PDB Chemical Component M8K

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M8K

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N	C	1.142	1.136
C	C1	1.439	1.432
C2	C1	1.394	1.397
C2	C3	1.383	1.377
C1	C6	1.392	1.397
C3	C4	1.392	1.396
O	C7	1.221	1.215
C6	C5	1.385	1.377
C4	C5	1.395	1.397
C4	C7	1.492	1.479
C7	N1	1.356	1.348
N1	C8	1.422	1.400
C13	C8	1.404	1.382
C13	C12	1.398	1.397
C8	C9	1.402	1.394
N2	C12	1.401	1.358
N2	C14	1.324	1.301
C12	C11	1.391	1.405
C9	C10	1.389	1.377
C14	C15	1.497	1.506
C14	N3	1.354	1.361
C11	C10	1.386	1.388
C11	N3	1.387	1.382
C15	N4	1.466	1.469
N4	C16	1.475	1.469
N4	C20	1.478	1.469
C16	C17	1.522	1.531
C17	C18	1.506	1.531
C20	C19	1.527	1.530
C18	C19	1.497	1.531
N1	H1	1.000	0.970
C2	H2	1.081	1.081
N3	H3	1.000	0.970
C5	H5	1.080	1.080
C6	H6	1.080	1.080
C3	H7	1.080	1.080
C13	H8	1.080	1.081
C10	H10	1.081	1.080
C9	H11	1.080	1.081
C15	H12	1.100	1.090
C15	H13	1.100	1.090
C20	H14	1.100	1.091
C20	H15	1.100	1.089
C19	H16	1.100	1.091
C19	H17	1.100	1.090
C18	H18	1.100	1.090
C18	H19	1.100	1.090
C17	H20	1.100	1.090
C17	H21	1.100	1.090
C16	H22	1.100	1.090
C16	H23	1.100	1.091

Bond Angles for M8K

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	120.2	120.0
C2	C1	C6	119.3	120.0
C1	C2	H2	119.9	120.0
C2	C3	C4	120.8	120.0
C3	C2	H2	119.9	120.0
C2	C3	H7	119.6	120.0
C1	C6	H6	120.0	120.0
C4	C7	O	120.6	120.0
C6	C5	H5	119.6	120.0
C5	C4	C7	121.5	120.0
C4	C5	H5	119.6	120.0
C7	N1	C8	128.3	120.0
C7	N1	H1	115.8	120.0
N1	C8	C9	116.3	119.8
C8	N1	H1	115.8	120.0
C13	C8	C9	120.2	120.3
C13	C12	C11	119.7	119.5
C12	C13	H8	120.6	120.2
C8	C9	C10	120.6	120.4
C8	C9	H11	119.7	119.8
N2	C12	C11	109.3	107.0
N2	C14	C15	124.8	125.0
C12	C11	C10	121.9	120.1
C9	C10	H10	120.7	120.0
C14	C15	H12	108.7	109.5
C14	C15	H13	108.8	109.5
C14	N3	H3	126.5	126.3
C11	C10	H10	120.7	120.0
C11	N3	H3	126.5	126.3
C15	N4	C16	110.3	111.0
C15	N4	C20	110.8	111.0
C20	N4	C16	109.2	111.1
N4	C16	C17	112.5	109.6
N4	C16	H22	108.7	109.5
N4	C16	H23	108.7	109.4
N4	C20	C19	113.3	109.5
N4	C20	H14	108.5	109.4
N4	C20	H15	108.5	109.5
C16	C17	H20	109.0	109.5
C16	C17	H21	109.0	109.6
C17	C18	H18	109.2	109.5
C17	C18	H19	109.2	109.6
C19	C20	H14	108.5	109.5
C19	C20	H15	108.5	109.5
C20	C19	H16	109.0	109.5
C20	C19	H17	109.0	109.5
C18	C19	H16	109.0	109.5
C18	C19	H17	109.0	109.6
H12	C15	H13	109.5	109.5
H14	C20	H15	109.5	109.4
H16	C19	H17	109.4	109.4
H18	C18	H19	109.5	109.5
H20	C17	H21	109.5	109.5
H22	C16	H23	109.5	109.4

Torsion Angles for M8K

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C	C1	C2	H2	357.5	0.2
C	C1	C6	H6	2.3	360.0
C1	C2	C3	C4	0.7	360.0
C3	C2	C1	H2	180.0	179.8
C1	C2	C3	H7	180.7	180.0
C2	C1	C6	H6	179.8	179.9
C3	C2	C1	C6	0.0	0.0
C1	C2	C3	H2	180.0	180.2
C6	C1	C2	H2	180.0	180.3
C1	C6	C5	H5	179.8	180.0
C4	C3	C2	C1	0.7	360.0
C4	C3	C2	H2	180.7	179.7
C2	C3	C4	H7	180.0	180.0
C3	C4	C5	H5	180.9	180.0
C5	C4	C7	O	140.5	0.0
O	C7	N1	C8	14.1	5.3
O	C7	N1	H1	194.1	185.0
C2	C1	C6	C5	359.7	360.0
C6	C5	C4	C7	184.8	180.0
C4	C5	C6	H5	180.0	179.9
C2	C3	C4	C5	358.9	360.0
C6	C5	C4	H5	180.0	180.1
C2	C3	C4	C7	175.0	180.0
C7	C4	C5	H5	4.8	360.0
C4	C7	N1	C8	191.7	185.3
C4	C7	N1	H1	11.8	5.0
C7	N1	C8	C9	185.9	33.5
C8	N1	C7	H1	180.0	180.3
C7	N1	C8	H1	180.0	179.7
C13	C8	N1	C9	178.8	180.0
N1	C8	C9	C10	178.7	180.0
N1	C8	C9	H11	358.7	360.0
N1	C8	C13	C9	181.3	180.0
C13	C8	N1	H1	184.6	33.8
C13	C8	C9	C10	359.9	360.0
C13	C8	C9	H11	179.9	180.0
C12	C13	C8	C9	358.8	360.0
N2	C12	C13	C11	182.5	179.9
C13	C12	C11	C10	358.5	360.0
C9	C8	N1	H1	5.9	213.8
C8	C9	C10	H10	180.7	180.0
C13	C12	N2	C11	177.7	180.1
N2	C12	C13	H8	4.4	359.9
N2	C12	C11	C10	176.5	180.1
C14	N2	C12	C11	0.7	360.0
N2	C14	C15	H12	229.4	155.0
N2	C14	C15	H13	348.6	34.9
N2	C14	N3	H3	179.0	180.0
C11	C12	C13	H8	181.9	180.0
C12	C11	C10	H10	180.2	180.1
C12	C11	N3	H3	181.4	180.0
C8	C9	C10	H11	180.0	180.0
C11	C10	C9	H10	180.0	180.1
C15	C14	N3	H3	1.3	359.9
C14	C15	N4	C16	189.0	190.0
C14	C15	N4	C20	68.0	65.8
H12	C15	C14	H13	240.9	120.0
C11	N3	C14	H3	180.0	180.2
C8	C9	C10	C11	0.6	0.0
C9	C10	C11	H10	180.0	179.9
C10	C11	N3	H3	3.9	0.1
C14	N3	C11	H3	180.0	179.8
C20	N4	C15	C16	239.0	235.8
C15	N4	C16	C17	172.3	174.2
C15	N4	C16	H22	292.7	294.2
C15	N4	C16	H23	51.9	54.1
C15	N4	C20	C19	156.4	185.8
C15	N4	C20	H14	276.9	305.9
C15	N4	C20	H15	35.8	65.8
C15	N4	C16	C20	238.1	235.9
C16	N4	C20	C19	34.7	61.7
C16	N4	C20	H14	155.3	181.8
C16	N4	C20	H15	274.2	301.7
N4	C16	C17	H20	150.6	299.3
N4	C16	C17	H21	270.1	179.2
H22	C16	N4	H23	240.9	240.1
C15	N4	C20	C16	121.7	124.1
C20	N4	C16	C17	294.2	298.3
C20	N4	C16	H22	54.6	58.3
C20	N4	C16	H23	173.8	178.3
C19	C20	N4	H14	239.5	240.0
C19	C20	N4	H15	120.5	120.1
N4	C20	C19	H16	146.8	60.8
N4	C20	C19	H17	266.1	180.8
H14	C20	N4	H15	241.1	240.1
N4	C16	C17	H22	120.4	120.0
N4	C16	C17	H23	239.6	240.0
C16	C17	C18	H18	151.9	182.5
C16	C17	C18	H19	271.6	62.3
H20	C17	C16	H21	240.6	120.1
N4	C16	C17	C18	30.4	59.2
C17	C18	C19	H16	178.1	297.7
C17	C18	C19	H17	58.6	177.6
H18	C18	C17	H19	240.3	120.2
C19	C20	N4	C16	34.7	61.7
N4	C20	C19	H14	120.6	120.0
N4	C20	C19	H15	239.4	239.9
C18	C19	C20	H16	239.7	240.0
C18	C19	C20	H17	120.3	120.0
H14	C20	C19	H15	118.9	120.0
H16	C19	C20	H17	240.6	240.0
C18	C19	C20	H14	265.9	180.8
C18	C19	C20	H15	147.0	60.9
C20	C19	C18	H16	120.3	120.0
C20	C19	C18	H17	239.7	240.0
H16	C19	C18	H17	119.4	120.0
C7	N1	H1	C8	180.0	180.3
H1	N1	C8	C9	5.9	213.8
C3	C2	H2	C1	180.0	180.2
H2	C2	C1	C6	180.0	180.3
H2	C2	C3	C4	180.7	179.7
H2	C2	C3	H7	0.7	359.8
H5	C5	C4	C7	4.8	360.0
H6	C6	C5	H5	359.8	0.1
H7	C3	C2	C1	180.7	180.0
C2	C3	H7	C4	180.0	180.0
H7	C3	C2	H2	0.7	359.8
H8	C13	C8	C9	178.8	180.0
H8	C13	C12	C11	181.9	180.0
C8	C9	H11	C10	180.0	180.0
H11	C9	C10	H10	0.7	360.0
C14	C15	H12	H13	118.7	240.0
H12	C15	N4	C16	68.6	310.0
H12	C15	N4	C20	307.6	185.8
C14	C15	H13	H12	241.3	120.0
H13	C15	N4	C16	309.5	70.0
H13	C15	N4	C20	188.5	305.8
H14	C20	N4	C16	155.3	181.8
N4	C20	H14	C19	236.5	239.9
N4	C20	H14	H15	118.3	119.9
C19	C20	H14	H15	241.8	240.0
H14	C20	C19	H16	26.2	300.8
H14	C20	C19	H17	145.6	60.8
H15	C20	N4	C16	274.2	301.7
N4	C20	H15	C19	123.5	120.1
N4	C20	H15	H14	241.7	240.1
C19	C20	H15	H14	118.2	120.0
H15	C20	C19	H16	267.3	180.8
H15	C20	C19	H17	26.7	300.8
H16	C19	C20	H14	26.2	300.8
H16	C19	C20	H15	267.3	180.8
C20	C19	H16	H17	119.1	120.1
C18	C19	H16	H17	240.9	239.9
H17	C19	C20	H14	145.6	60.8
H17	C19	C20	H15	26.7	300.8
C20	C19	H17	H16	240.9	239.9
C18	C19	H17	H16	119.1	120.1
C17	C18	H18	H19	119.5	239.8
H18	C18	C19	H16	57.9	57.6
H18	C18	C19	H17	298.5	297.5
C17	C18	H19	H18	240.5	120.1
H19	C18	C19	H16	298.2	177.7
H19	C18	C19	H17	178.8	57.7
C16	C17	H20	H21	119.2	239.9
H20	C17	C18	H18	31.6	302.4
H20	C17	C18	H19	151.3	182.2
C16	C17	H21	H20	240.8	120.1
H21	C17	C18	H18	272.2	62.4
H21	C17	C18	H19	31.9	302.3
N4	C16	H22	C17	237.2	239.9
N4	C16	H22	H23	118.6	120.0
H22	C16	C17	H20	30.2	179.2
H22	C16	C17	H21	149.6	59.2
N4	C16	H23	C17	122.8	120.1
N4	C16	H23	H22	241.4	240.0
H23	C16	C17	H20	271.1	59.3
H23	C16	C17	H21	30.5	299.2