PDB Chemical Component M8F
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M8F
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
C1 |
1.538 |
1.530 |
| C2 |
C1 |
1.487 |
1.507 |
| C1 |
N1 |
1.539 |
1.469 |
| C1 |
H1 |
1.100 |
1.091 |
| N1 |
HN1 |
1.000 |
1.009 |
| N1 |
HN1A |
1.000 |
1.009 |
| O4 |
C2 |
1.224 |
1.208 |
| C2 |
O3 |
1.280 |
1.342 |
| O3 |
HO3 |
0.950 |
0.966 |
| C5 |
C6 |
1.545 |
1.530 |
| C5 |
H5 |
1.100 |
1.090 |
| C5 |
H5A |
1.100 |
1.089 |
| C7 |
C6 |
1.539 |
1.530 |
| C6 |
H6 |
1.100 |
1.089 |
| C6 |
H6A |
1.100 |
1.090 |
| C7 |
C8 |
1.523 |
1.507 |
| C7 |
H7 |
1.100 |
1.090 |
| C7 |
H7A |
1.100 |
1.090 |
| N10 |
C8 |
1.335 |
1.348 |
| C8 |
O9 |
1.258 |
1.213 |
| N10 |
C11 |
1.497 |
1.465 |
| N10 |
HN10 |
1.000 |
0.971 |
| C12 |
C11 |
1.555 |
1.530 |
| C14 |
C11 |
1.550 |
1.507 |
| C11 |
H11 |
1.100 |
1.090 |
| S13 |
C12 |
1.837 |
1.814 |
| C12 |
H12 |
1.100 |
1.089 |
| C12 |
H12A |
1.100 |
1.090 |
| S13 |
HS13 |
1.300 |
1.345 |
| O15 |
C14 |
1.254 |
1.213 |
| N16 |
C14 |
1.322 |
1.347 |
| C17 |
N16 |
1.476 |
1.465 |
| N16 |
HN16 |
1.000 |
0.970 |
| C18 |
C17 |
1.523 |
1.530 |
| C17 |
C22 |
1.495 |
1.507 |
| C17 |
H17 |
1.100 |
1.090 |
| C19 |
C18 |
1.521 |
1.530 |
| C18 |
H18 |
1.100 |
1.090 |
| C18 |
H18A |
1.100 |
1.090 |
| S20 |
C19 |
1.836 |
1.813 |
| C19 |
H19 |
1.100 |
1.090 |
| C19 |
H19A |
1.101 |
1.089 |
| C21 |
S20 |
1.774 |
1.814 |
| C21 |
H21 |
1.100 |
1.090 |
| C21 |
H21A |
1.100 |
1.089 |
| C21 |
H21B |
1.100 |
1.090 |
| O24 |
C22 |
1.255 |
1.208 |
| C22 |
O23 |
1.231 |
1.343 |
| O23 |
HO23 |
0.950 |
0.966 |
Bond Angles for M8F
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C1 |
N1 |
111.5 |
109.5 |
| C5 |
C1 |
H1 |
107.6 |
109.4 |
| C2 |
C1 |
N1 |
110.0 |
109.5 |
| C2 |
C1 |
H1 |
109.1 |
109.4 |
| O4 |
C2 |
C1 |
120.2 |
119.9 |
| C1 |
C2 |
O3 |
114.2 |
120.0 |
| N1 |
C1 |
H1 |
108.0 |
109.5 |
| C1 |
N1 |
HN1 |
109.5 |
110.9 |
| C1 |
N1 |
HN1A |
109.5 |
111.0 |
| HN1 |
N1 |
HN1A |
109.4 |
111.0 |
| O4 |
C2 |
O3 |
125.5 |
120.0 |
| C2 |
O3 |
HO3 |
109.5 |
117.0 |
| C6 |
C5 |
H5 |
108.0 |
109.4 |
| C6 |
C5 |
H5A |
107.0 |
109.5 |
| C7 |
C6 |
C5 |
108.4 |
109.5 |
| C5 |
C6 |
H6 |
109.8 |
109.5 |
| C5 |
C6 |
H6A |
110.1 |
109.5 |
| H5 |
C5 |
H5A |
113.0 |
109.5 |
| C7 |
C6 |
H6 |
109.8 |
109.4 |
| C7 |
C6 |
H6A |
110.1 |
109.4 |
| C6 |
C7 |
H7 |
110.3 |
109.5 |
| C6 |
C7 |
H7A |
110.9 |
109.5 |
| H6 |
C6 |
H6A |
108.6 |
109.5 |
| H7 |
C7 |
H7A |
107.5 |
109.5 |
| C11 |
N10 |
HN10 |
118.4 |
120.0 |
| N10 |
C11 |
H11 |
111.8 |
109.4 |
| C12 |
C11 |
H11 |
112.5 |
109.5 |
| C14 |
C11 |
H11 |
108.9 |
109.5 |
| S13 |
C12 |
H12 |
108.9 |
109.5 |
| S13 |
C12 |
H12A |
108.5 |
109.5 |
| H12 |
C12 |
H12A |
110.9 |
109.5 |
| C17 |
N16 |
HN16 |
119.8 |
120.0 |
| C18 |
C17 |
H17 |
107.6 |
109.4 |
| C22 |
C17 |
H17 |
107.6 |
109.5 |
| C17 |
C22 |
O23 |
115.7 |
120.0 |
| C19 |
C18 |
H18 |
107.7 |
109.5 |
| C19 |
C18 |
H18A |
106.5 |
109.5 |
| H18 |
C18 |
H18A |
113.7 |
109.5 |
| S20 |
C19 |
H19 |
107.5 |
109.5 |
| S20 |
C19 |
H19A |
106.1 |
109.5 |
| H19 |
C19 |
H19A |
114.3 |
109.5 |
| H21 |
C21 |
H21A |
109.5 |
109.5 |
| H21 |
C21 |
H21B |
109.4 |
109.5 |
| H21A |
C21 |
H21B |
109.5 |
109.5 |
| O24 |
C22 |
O23 |
124.2 |
120.0 |
| C22 |
O23 |
HO23 |
109.5 |
117.0 |
Torsion Angles for M8F
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C5 |
N1 |
237.3 |
239.9 |
| C2 |
C1 |
C5 |
H1 |
119.0 |
119.9 |
| C5 |
C1 |
C2 |
O3 |
114.3 |
280.0 |
| N1 |
C1 |
C5 |
H1 |
241.7 |
240.0 |
| C5 |
C1 |
N1 |
HN1 |
155.6 |
176.0 |
| C5 |
C1 |
N1 |
HN1A |
275.5 |
299.9 |
| C7 |
C6 |
C5 |
C1 |
175.9 |
180.0 |
| C5 |
C1 |
C2 |
N1 |
123.5 |
120.0 |
| C5 |
C1 |
C2 |
H1 |
241.9 |
240.1 |
| N1 |
C1 |
C2 |
H1 |
118.4 |
120.0 |
| C2 |
C1 |
N1 |
HN1 |
278.5 |
296.1 |
| C2 |
C1 |
N1 |
HN1A |
38.4 |
60.0 |
| O4 |
C2 |
C1 |
O3 |
184.1 |
180.0 |
| C1 |
C2 |
O3 |
HO3 |
184.4 |
180.0 |
| C5 |
C1 |
N1 |
H1 |
118.1 |
120.0 |
| C2 |
C1 |
N1 |
H1 |
241.0 |
240.0 |
| O4 |
C2 |
C1 |
N1 |
174.9 |
340.0 |
| N1 |
C1 |
C2 |
O3 |
350.8 |
160.0 |
| HN1 |
N1 |
C1 |
HN1A |
240.0 |
236.1 |
| C5 |
C1 |
H1 |
N1 |
239.5 |
240.0 |
| C2 |
C1 |
H1 |
N1 |
119.6 |
120.0 |
| O4 |
C2 |
C1 |
H1 |
56.5 |
220.0 |
| H1 |
C1 |
C2 |
O3 |
232.4 |
40.0 |
| H1 |
C1 |
N1 |
HN1 |
37.5 |
56.1 |
| H1 |
C1 |
N1 |
HN1A |
157.5 |
180.0 |
| HN1 |
N1 |
C1 |
H1 |
37.5 |
56.1 |
| C1 |
N1 |
HN1 |
HN1A |
120.0 |
123.9 |
| HN1A |
N1 |
C1 |
H1 |
157.5 |
180.0 |
| C1 |
N1 |
HN1A |
HN1 |
240.0 |
236.1 |
| C1 |
C2 |
O4 |
O3 |
175.4 |
180.0 |
| O4 |
C2 |
O3 |
HO3 |
0.0 |
360.0 |
| O3 |
C2 |
C1 |
N1 |
350.8 |
160.0 |
| O3 |
C2 |
C1 |
H1 |
232.4 |
40.0 |
| O4 |
C2 |
O3 |
C1 |
175.6 |
180.0 |
| C6 |
C5 |
C1 |
N1 |
298.3 |
295.1 |
| C6 |
C5 |
C1 |
H1 |
56.6 |
55.1 |
| H5 |
C5 |
C6 |
H5A |
121.9 |
120.0 |
| C7 |
C6 |
C5 |
H6 |
240.0 |
120.0 |
| C7 |
C6 |
C5 |
H6A |
120.4 |
240.1 |
| C5 |
C6 |
C7 |
H7 |
301.3 |
60.0 |
| C5 |
C6 |
C7 |
H7A |
60.3 |
300.0 |
| H6 |
C6 |
C5 |
H6A |
240.4 |
120.1 |
| H5 |
C5 |
C1 |
N1 |
58.3 |
55.0 |
| H5 |
C5 |
C1 |
H1 |
176.6 |
175.0 |
| C6 |
C5 |
H5 |
H5A |
241.8 |
240.0 |
| C7 |
C6 |
C5 |
H5 |
55.9 |
60.0 |
| H5 |
C5 |
C6 |
H6 |
175.9 |
300.0 |
| H5 |
C5 |
C6 |
H6A |
295.5 |
180.0 |
| H5A |
C5 |
C1 |
N1 |
180.2 |
175.0 |
| H5A |
C5 |
C1 |
H1 |
298.5 |
295.0 |
| C6 |
C5 |
H5A |
H5 |
118.8 |
120.0 |
| C7 |
C6 |
C5 |
H5A |
294.0 |
300.0 |
| H5A |
C5 |
C6 |
H6 |
54.0 |
180.0 |
| H5A |
C5 |
C6 |
H6A |
173.6 |
60.0 |
| C5 |
C6 |
C7 |
H6 |
120.0 |
239.9 |
| C5 |
C6 |
C7 |
H6A |
239.6 |
120.0 |
| H6 |
C6 |
C7 |
H6A |
119.6 |
240.0 |
| H7 |
C7 |
C6 |
H7A |
241.0 |
120.0 |
| H6 |
C6 |
C5 |
H5 |
175.9 |
300.0 |
| H6 |
C6 |
C5 |
H5A |
54.0 |
180.0 |
| C7 |
C6 |
H6 |
C5 |
119.1 |
240.0 |
| C5 |
C6 |
H6 |
H6A |
120.5 |
240.0 |
| C7 |
C6 |
H6 |
H6A |
239.6 |
119.9 |
| H6 |
C6 |
C7 |
H7 |
181.3 |
180.0 |
| H6 |
C6 |
C7 |
H7A |
300.3 |
60.0 |
| H6A |
C6 |
C5 |
H5 |
295.5 |
180.0 |
| H6A |
C6 |
C5 |
H5A |
173.6 |
60.0 |
| C7 |
C6 |
H6A |
C5 |
240.6 |
120.0 |
| C5 |
C6 |
H6A |
H6 |
239.7 |
120.1 |
| C7 |
C6 |
H6A |
H6 |
120.3 |
240.1 |
| H6A |
C6 |
C7 |
H7 |
61.7 |
300.0 |
| H6A |
C6 |
C7 |
H7A |
180.7 |
180.0 |
| H7 |
C7 |
C6 |
C5 |
301.3 |
60.0 |
| H7 |
C7 |
C6 |
H6 |
181.3 |
180.0 |
| H7 |
C7 |
C6 |
H6A |
61.7 |
300.0 |
| C6 |
C7 |
H7 |
H7A |
121.0 |
240.0 |
| H7A |
C7 |
C6 |
C5 |
60.3 |
300.0 |
| H7A |
C7 |
C6 |
H6 |
300.3 |
60.0 |
| H7A |
C7 |
C6 |
H6A |
180.7 |
180.0 |
| C6 |
C7 |
H7A |
H7 |
239.3 |
120.0 |
| C12 |
C11 |
N10 |
H11 |
122.6 |
120.0 |
| C14 |
C11 |
N10 |
H11 |
239.4 |
240.1 |
| HN10 |
N10 |
C11 |
H11 |
187.8 |
145.0 |
| C12 |
C11 |
N10 |
HN10 |
310.4 |
265.0 |
| N10 |
C11 |
C12 |
H11 |
237.8 |
240.0 |
| C14 |
C11 |
C12 |
H11 |
120.6 |
120.0 |
| C14 |
C11 |
N10 |
HN10 |
67.1 |
25.0 |
| N10 |
C11 |
C14 |
H11 |
122.4 |
119.9 |
| C12 |
C11 |
C14 |
H11 |
237.2 |
240.0 |
| H11 |
C11 |
N10 |
HN10 |
187.8 |
145.0 |
| S13 |
C12 |
C11 |
H11 |
175.6 |
60.0 |
| H12 |
C12 |
S13 |
H12A |
120.8 |
120.1 |
| H12 |
C12 |
C11 |
H11 |
295.5 |
180.0 |
| S13 |
C12 |
H12 |
H12A |
240.7 |
240.0 |
| H12A |
C12 |
C11 |
H11 |
56.3 |
300.0 |
| S13 |
C12 |
H12A |
H12 |
119.5 |
120.0 |
| HS13 |
S13 |
C12 |
H12 |
85.7 |
60.0 |
| HS13 |
S13 |
C12 |
H12A |
324.9 |
300.0 |
| O15 |
C14 |
C11 |
H11 |
245.1 |
240.0 |
| N16 |
C14 |
C11 |
H11 |
71.1 |
60.1 |
| C18 |
C17 |
N16 |
HN16 |
92.7 |
25.0 |
| C22 |
C17 |
C18 |
H17 |
242.7 |
240.0 |
| C18 |
C17 |
C22 |
O23 |
214.1 |
60.0 |
| C22 |
C17 |
N16 |
HN16 |
326.9 |
265.0 |
| C18 |
C17 |
C22 |
H17 |
117.3 |
120.0 |
| O24 |
C22 |
C17 |
O23 |
180.1 |
180.0 |
| C17 |
C22 |
O23 |
HO23 |
180.1 |
180.0 |
| H17 |
C17 |
N16 |
HN16 |
209.8 |
145.0 |
| H17 |
C17 |
C22 |
O23 |
96.7 |
300.0 |
| C19 |
C18 |
C17 |
H17 |
236.9 |
305.0 |
| H18 |
C18 |
C19 |
H18A |
122.4 |
120.0 |
| H18 |
C18 |
C17 |
H17 |
356.9 |
65.0 |
| C19 |
C18 |
H18 |
H18A |
242.2 |
240.0 |
| H18A |
C18 |
C17 |
H17 |
119.3 |
185.0 |
| C19 |
C18 |
H18A |
H18 |
118.5 |
120.0 |
| S20 |
C19 |
C18 |
H18 |
173.1 |
60.0 |
| S20 |
C19 |
C18 |
H18A |
50.8 |
300.0 |
| H19 |
C19 |
S20 |
H19A |
122.8 |
120.0 |
| H19 |
C19 |
C18 |
H18 |
293.1 |
180.0 |
| H19 |
C19 |
C18 |
H18A |
170.7 |
60.1 |
| S20 |
C19 |
H19 |
H19A |
242.5 |
240.0 |
| H19A |
C19 |
C18 |
H18 |
55.9 |
300.0 |
| H19A |
C19 |
C18 |
H18A |
293.5 |
180.0 |
| S20 |
C19 |
H19A |
H19 |
118.3 |
120.1 |
| C21 |
S20 |
C19 |
H19 |
161.6 |
60.0 |
| C21 |
S20 |
C19 |
H19A |
38.9 |
300.0 |
| H21A |
C21 |
H21 |
H21B |
120.0 |
120.0 |
| H21 |
C21 |
H21A |
H21B |
240.0 |
240.0 |
| H21 |
C21 |
H21B |
H21A |
120.0 |
120.0 |
| O24 |
C22 |
C17 |
H17 |
276.9 |
120.0 |
| C17 |
C22 |
O24 |
O23 |
179.8 |
180.0 |
| O24 |
C22 |
O23 |
HO23 |
360.0 |
0.0 |
| O23 |
C22 |
C17 |
H17 |
96.7 |
300.0 |