PDB Chemical Component M7G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M7G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PA O1A 1.492 1.480
PA O2A 1.482 1.609
PA O3A 1.629 1.610
PA O5' 1.642 1.610
O2A HOA2 0.950 0.967
O3A PB 1.621 1.610
O5' C5' 1.408 1.430
PB O1B 1.487 1.479
PB O2B 1.486 1.610
PB O3B 1.487 1.611
O2B HOB2 0.950 0.967
O3B HOB3 0.950 0.967
C5' C4' 1.490 1.529
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C4' O4' 1.467 1.437
C4' C3' 1.497 1.541
C4' H4' 1.101 1.090
O4' C1' 1.450 1.443
C3' O3' 1.449 1.429
C3' C2' 1.549 1.549
C3' H3' 1.100 1.089
O3' HO3' 0.950 0.967
C2' O2' 1.457 1.428
C2' C1' 1.526 1.549
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C1' N9 1.503 1.465
C1' H1' 1.100 1.090
N9 C8 1.338 1.365
N9 C4 1.335 1.368
C8 N7 1.304 1.301
C8 H81 1.079 1.080
N7 CM7 1.458 1.465
N7 C5 1.474 1.355
CM7 HM71 1.100 1.091
CM7 HM72 1.100 1.090
CM7 HM73 1.100 1.090
C5 C6 1.266 1.415
C5 C4 1.420 1.399
C6 O6 1.292 1.219
C6 N1 1.390 1.351
N1 C2 1.378 1.363
N1 HN1 1.000 0.970
C2 N2 1.314 1.373
C2 N3 1.312 1.314
N2 HN21 1.000 0.970
N2 HN22 1.000 0.970
N3 C4 1.361 1.339

Bond Angles for M7G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A PA O2A 107.3 109.5
O1A PA O3A 110.1 109.5
O1A PA O5' 111.3 109.5
O2A PA O3A 108.6 109.5
O2A PA O5' 108.5 109.5
PA O2A HOA2 109.5 114.0
O3A PA O5' 110.9 109.4
PA O3A PB 125.7 134.0
PA O5' C5' 123.0 123.0
O3A PB O1B 111.3 109.5
O3A PB O2B 107.1 109.5
O3A PB O3B 110.5 109.5
O5' C5' C4' 114.9 109.5
O5' C5' H5'1 108.1 109.4
O5' C5' H5'2 108.1 109.4
O1B PB O2B 108.6 109.5
O1B PB O3B 109.1 109.4
O2B PB O3B 110.2 109.5
PB O2B HOB2 109.5 114.1
PB O3B HOB3 109.5 114.0
C4' C5' H5'1 108.1 109.5
C4' C5' H5'2 108.1 109.5
C5' C4' O4' 108.3 109.9
C5' C4' C3' 116.2 109.8
C5' C4' H4' 110.9 109.9
H5'1 C5' H5'2 109.5 109.5
O4' C4' C3' 98.9 107.3
O4' C4' H4' 111.2 109.9
C4' O4' C1' 108.8 107.0
C3' C4' H4' 110.8 110.0
C4' C3' O3' 111.6 110.5
C4' C3' C2' 99.8 104.1
C4' C3' H3' 111.7 110.5
O4' C1' C2' 105.4 103.5
O4' C1' N9 99.9 110.6
O4' C1' H1' 112.5 110.7
O3' C3' C2' 109.9 110.4
O3' C3' H3' 112.4 110.5
C3' O3' HO3' 109.5 114.1
C2' C3' H3' 110.9 110.6
C3' C2' O2' 112.2 110.9
C3' C2' C1' 97.2 102.1
C3' C2' H2' 110.9 110.9
O2' C2' C1' 112.1 111.0
O2' C2' H2' 112.3 110.8
C2' O2' HO2' 109.5 114.1
C1' C2' H2' 111.2 111.0
C2' C1' N9 115.4 110.6
C2' C1' H1' 111.3 110.6
N9 C1' H1' 111.7 110.6
C1' N9 C8 134.4 126.2
C1' N9 C4 115.9 126.3
C8 N9 C4 109.7 107.5
N9 C8 N7 108.0 109.8
N9 C8 H81 126.0 125.1
N9 C4 C5 111.6 106.1
N9 C4 N3 124.6 134.2
N7 C8 H81 126.0 125.1
C8 N7 CM7 126.4 125.3
C8 N7 C5 112.4 109.4
CM7 N7 C5 121.3 125.3
N7 CM7 HM71 109.5 109.5
N7 CM7 HM72 109.5 109.5
N7 CM7 HM73 109.5 109.5
N7 C5 C6 136.9 134.2
N7 C5 C4 98.4 107.2
HM71 CM7 HM72 109.4 109.4
HM71 CM7 HM73 109.4 109.5
HM72 CM7 HM73 109.5 109.5
C6 C5 C4 124.7 118.6
C5 C6 O6 124.3 120.8
C5 C6 N1 110.6 118.3
C5 C4 N3 123.8 119.7
O6 C6 N1 125.1 120.9
C6 N1 C2 126.2 120.3
C6 N1 HN1 116.9 119.8
C2 N1 HN1 116.9 119.8
N1 C2 N2 119.3 119.0
N1 C2 N3 122.3 121.9
N2 C2 N3 118.4 119.0
C2 N2 HN21 120.0 120.0
C2 N2 HN22 120.0 120.0
C2 N3 C4 112.4 121.1
HN21 N2 HN22 120.1 120.0

Torsion Angles for M7G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2A PA O1A O3A 242.0 240.0
O2A PA O1A O5' 118.5 120.0
O1A PA O2A HOA2 360.0 180.0
O3A PA O1A O5' 236.5 240.0
O1A PA O3A PB 77.9 320.0
O1A PA O5' C5' 332.2 55.0
O1A PA O2A O3A 119.0 120.0
O1A PA O2A O5' 239.7 240.0
O3A PA O2A O5' 120.6 120.0
O2A PA O3A PB 195.1 80.0
O2A PA O5' C5' 214.4 295.0
O1A PA O3A O2A 242.8 240.0
O1A PA O3A O5' 123.7 120.0
O2A PA O3A O5' 240.9 240.0
O3A PA O2A HOA2 241.0 60.0
O3A PA O5' C5' 95.3 175.0
PA O3A PB O1B 304.6 45.0
PA O3A PB O2B 186.0 165.0
PA O3A PB O3B 66.0 285.0
O1A PA O5' O2A 117.8 120.0
O1A PA O5' O3A 237.0 240.0
O2A PA O5' O3A 119.2 120.0
O5' PA O2A HOA2 120.3 300.1
O5' PA O3A PB 314.2 200.0
PA O5' C5' C4' 137.4 180.0
PA O5' C5' H5'1 258.2 300.0
PA O5' C5' H5'2 16.6 60.0
HOA2 O2A PA O3A 241.0 60.0
HOA2 O2A PA O5' 120.3 300.1
PB O3A PA O5' 314.2 200.0
O1B PB O3A O2B 118.6 240.0
O1B PB O3A O3B 238.6 120.0
O2B PB O3A O3B 120.0 240.0
O3A PB O2B HOB2 120.3 180.0
O3A PB O3B HOB3 237.3 300.0
C4' C5' O5' H5'1 239.2 240.0
C4' C5' O5' H5'2 120.8 120.1
O5' C5' C4' O4' 279.8 66.5
O5' C5' C4' C3' 29.9 184.3
O5' C5' C4' H4' 157.5 305.4
H5'1 C5' O5' H5'2 241.6 240.1
O3A PB O1B O2B 242.4 120.0
O3A PB O1B O3B 122.2 240.0
O2B PB O1B O3B 239.8 120.0
O1B PB O2B HOB2 360.0 300.0
O1B PB O3B HOB3 360.0 180.0
O3A PB O2B O1B 120.3 240.0
O3A PB O2B O3B 239.8 120.0
O1B PB O2B O3B 119.5 240.0
O2B PB O3B HOB3 119.2 60.0
O3A PB O3B O1B 237.3 120.0
O3A PB O3B O2B 118.1 240.0
O1B PB O3B O2B 240.8 120.0
O3B PB O2B HOB2 240.5 60.0
HOB2 O2B PB O3B 240.5 60.0
O5' C5' C4' H5'1 120.8 120.0
O5' C5' C4' H5'2 239.2 240.0
H5'1 C5' C4' H5'2 118.4 120.1
O4' C4' C5' C3' 249.9 242.2
O4' C4' C5' H4' 122.2 121.0
C5' C4' O4' C1' 153.7 145.9
C3' C4' C5' H4' 232.4 238.9
C5' C4' C3' O3' 77.2 119.9
C5' C4' C3' C2' 193.2 238.5
C5' C4' C3' H3' 310.5 357.3
O5' C5' H5'1 C4' 235.1 240.0
O5' C5' H5'1 H5'2 117.5 119.9
C4' C5' H5'1 H5'2 242.5 239.9
H5'1 C5' C4' O4' 159.0 306.5
H5'1 C5' C4' C3' 269.1 64.3
H5'1 C5' C4' H4' 36.7 185.5
O5' C5' H5'2 C4' 124.9 120.0
O5' C5' H5'2 H5'1 242.5 240.1
C4' C5' H5'2 H5'1 117.5 120.1
H5'2 C5' C4' O4' 40.5 186.4
H5'2 C5' C4' C3' 150.7 304.3
H5'2 C5' C4' H4' 278.3 65.4
O4' C4' C5' H5'1 159.0 306.5
O4' C4' C5' H5'2 40.5 186.4
C5' C4' O4' C3' 121.5 119.4
C5' C4' O4' H4' 238.0 239.0
C3' C4' O4' H4' 116.5 119.5
O4' C4' C3' O3' 192.7 239.4
O4' C4' C3' C2' 308.7 358.0
O4' C4' C3' H3' 66.0 116.8
C4' O4' C1' C2' 0.2 319.9
C4' O4' C1' N9 240.2 201.4
C4' O4' C1' H1' 121.7 78.5
C3' C4' C5' H5'1 269.1 64.3
C3' C4' C5' H5'2 150.7 304.3
C5' C4' C3' O4' 244.5 240.5
C5' C4' C3' H4' 127.7 121.1
O4' C4' C3' H4' 243.2 240.5
C3' C4' O4' C1' 32.1 26.5
O3' C3' C4' C2' 244.0 241.4
O3' C3' C4' H3' 126.7 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 242.8 241.2
C4' C3' C2' O2' 293.3 220.9
C4' C3' C2' C1' 50.8 339.1
C4' C3' C2' H2' 166.9 97.4
H4' C4' C5' H5'1 36.7 185.5
H4' C4' C5' H5'2 278.3 65.4
C5' C4' H4' O4' 120.5 121.1
C5' C4' H4' C3' 229.4 239.0
O4' C4' H4' C3' 108.9 117.9
H4' C4' O4' C1' 275.7 267.0
H4' C4' C3' O3' 309.5 358.8
H4' C4' C3' C2' 65.5 117.4
H4' C4' C3' H3' 182.8 236.2
C1' O4' C4' C3' 32.1 26.5
C1' O4' C4' H4' 275.7 267.0
C3' C2' C1' O4' 328.9 37.0
O2' C2' C1' O4' 86.5 155.2
O4' C1' C2' H2' 213.1 278.8
C2' C1' O4' N9 120.0 118.5
C2' C1' O4' H1' 238.5 241.5
N9 C1' O4' H1' 118.5 123.0
O4' C1' N9 C8 24.8 23.6
O4' C1' N9 C4 203.6 203.3
O3' C3' C4' H4' 309.5 358.8
C4' C3' O3' C2' 109.7 114.7
C4' C3' O3' H3' 233.7 237.4
C2' C3' O3' H3' 124.0 122.7
O3' C3' C2' O2' 50.6 339.6
O3' C3' C2' C1' 168.1 97.8
O3' C3' C2' H2' 284.2 216.0
C2' C3' C4' H4' 65.5 117.4
C4' C3' C2' O3' 242.7 241.3
C4' C3' C2' H3' 117.8 118.7
O4' C1' C2' C3' 328.9 37.0
O3' C3' C2' H3' 235.1 237.4
C2' C3' O3' HO3' 70.3 65.3
O2' C2' C3' C1' 242.5 241.7
O2' C2' C3' H2' 126.4 123.5
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 244.0 241.8
C3' C2' C1' N9 78.1 155.5
C3' C2' C1' H1' 206.7 278.4
H3' C3' C4' H4' 182.8 236.2
C4' C3' H3' O3' 126.3 122.6
C4' C3' H3' C2' 249.7 245.2
O3' C3' H3' C2' 123.4 122.6
H3' C3' O3' HO3' 306.3 302.6
H3' C3' C2' O2' 175.5 102.1
H3' C3' C2' C1' 293.0 220.4
H3' C3' C2' H2' 49.0 338.6
HO3' O3' C3' C2' 70.3 65.3
HO3' O3' C3' H3' 306.3 302.6
O4' C1' C2' O2' 86.5 155.2
O2' C2' C3' H3' 175.5 102.1
C3' C2' O2' C1' 108.2 112.7
C3' C2' O2' H2' 234.3 236.4
C1' C2' O2' H2' 126.1 123.7
O2' C2' C1' N9 195.7 273.7
O2' C2' C1' H1' 324.2 36.6
O4' C1' C2' N9 250.8 241.5
O4' C1' C2' H1' 122.2 118.6
C1' C2' C3' H3' 293.0 220.4
C3' C2' C1' O2' 242.4 241.8
C3' C2' C1' H2' 115.8 118.2
O2' C2' C1' H2' 233.3 236.4
C1' C2' O2' HO2' 71.8 185.9
N9 C1' C2' H1' 231.4 237.1
C2' C1' N9 C8 272.4 269.5
C2' C1' N9 C4 91.1 89.2
H2' C2' C3' H3' 49.0 338.6
C3' C2' H2' O2' 126.4 123.6
C3' C2' H2' C1' 253.0 247.3
O2' C2' H2' C1' 126.6 123.7
H2' C2' O2' HO2' 305.7 62.1
H2' C2' C1' N9 322.3 37.4
H2' C2' C1' H1' 90.9 160.3
HO2' O2' C2' C1' 71.8 185.9
HO2' O2' C2' H2' 305.7 62.1
O4' C1' N9 C2' 112.4 114.1
O4' C1' N9 H1' 240.8 237.0
N9 C1' C2' H2' 322.3 37.4
C2' C1' N9 H1' 128.4 122.9
C8 N9 C1' C4 181.2 180.3
C1' N9 C8 N7 178.5 180.0
C1' N9 C8 H81 358.5 359.9
C1' N9 C4 C5 181.2 179.9
C1' N9 C4 N3 1.7 0.7
O4' C1' H1' C2' 241.9 245.9
O4' C1' H1' N9 111.4 123.0
H1' C1' C2' H2' 90.9 160.3
C2' C1' H1' N9 229.5 237.1
H1' C1' N9 C8 144.0 146.6
H1' C1' N9 C4 322.7 326.2
C8 N9 C1' H1' 144.0 146.6
C1' N9 C8 C4 178.8 179.7
C8 N9 C4 C5 0.2 359.6
C8 N9 C4 N3 180.7 180.4
N7 C8 N9 H81 180.0 180.0
N9 C8 N7 CM7 180.1 180.0
N9 C8 N7 C5 0.2 360.0
C4 N9 C1' H1' 322.7 326.2
C1' N9 C4 C8 180.9 180.3
C4 N9 C8 N7 359.7 0.3
C4 N9 C8 H81 179.7 180.2
N7 C5 C4 N9 359.9 0.4
C6 C5 C4 N9 179.8 180.2
C5 C4 N9 N3 179.5 179.2
C2 N3 C4 N9 180.2 179.6
N7 C8 N9 C4 359.7 0.3
N9 C8 N7 H81 180.0 180.0
CM7 N7 C8 C5 179.9 180.0
C8 N7 CM7 HM71 180.0 90.0
C8 N7 CM7 HM72 300.0 209.9
C8 N7 CM7 HM73 60.0 330.0
C8 N7 C5 C6 180.0 180.0
C8 N7 C5 C4 359.9 359.8
H81 C8 N9 C4 179.7 180.2
N9 C8 H81 N7 180.0 180.0
H81 C8 N7 CM7 0.1 0.0
H81 C8 N7 C5 180.2 180.0
CM7 N7 C8 H81 0.1 0.0
C8 N7 CM7 C5 180.1 180.0
CM7 N7 C5 C6 0.1 360.0
CM7 N7 C5 C4 180.0 179.8
HM71 CM7 N7 HM72 240.0 240.1
HM71 CM7 N7 HM73 120.0 120.0
HM72 CM7 N7 HM73 240.0 240.0
N9 C4 C5 N7 359.9 0.4
C5 N7 C8 H81 180.2 180.0
C8 N7 C5 CM7 179.9 180.0
C5 N7 CM7 HM71 359.9 270.0
C5 N7 CM7 HM72 119.9 30.0
C5 N7 CM7 HM73 239.9 150.0
C6 C5 N7 C4 180.1 180.2
N7 C5 C6 O6 0.8 0.0
N7 C5 C6 N1 180.0 180.0
N7 C5 C4 N3 179.4 179.7
HM71 CM7 N7 C5 359.9 270.0
N7 CM7 HM71 HM72 120.0 120.0
N7 CM7 HM71 HM73 240.0 240.0
HM72 CM7 HM71 HM73 120.0 119.9
HM72 CM7 N7 C5 119.9 30.0
N7 CM7 HM72 HM71 239.9 240.0
N7 CM7 HM72 HM73 120.0 120.1
HM71 CM7 HM72 HM73 240.1 240.1
HM73 CM7 N7 C5 239.9 150.0
N7 CM7 HM73 HM71 120.0 120.0
N7 CM7 HM73 HM72 240.0 239.9
HM71 CM7 HM73 HM72 119.9 119.9
N9 C4 C5 C6 179.8 180.2
N7 C5 C6 C4 179.9 179.8
C6 C5 C4 N3 359.3 359.5
O6 C6 C5 N1 180.8 180.1
C5 C6 N1 C2 0.4 0.0
C5 C6 N1 HN1 180.4 180.0
N9 C4 C5 N3 180.5 180.7
N7 C5 C4 C6 180.1 180.2
C4 C5 C6 O6 180.9 180.3
C4 C5 C6 N1 0.1 0.2
C2 N3 C4 C5 0.7 0.5
O6 C6 C5 C4 180.9 180.3
C5 C6 O6 N1 179.0 179.9
O6 C6 N1 C2 179.5 180.0
O6 C6 N1 HN1 359.5 359.9
N1 C6 C5 C4 0.1 0.2
C5 C6 N1 O6 180.8 180.1
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 179.6 180.0
C6 N1 C2 N3 359.7 0.0
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 179.9 180.0
N1 C2 N2 HN21 180.1 360.0
N1 C2 N2 HN22 0.1 180.0
N1 C2 N3 C4 359.7 359.7
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 359.6 0.0
HN1 N1 C2 N3 179.7 180.0
N2 C2 N1 HN1 359.6 0.0
N1 C2 N2 N3 180.1 180.0
N2 C2 N3 C4 179.8 179.7
HN21 N2 C2 HN22 180.0 179.9
N9 C4 N3 C2 180.2 179.6
C5 C4 N3 C2 0.7 0.5
N3 C2 N1 HN1 179.7 180.0
N1 C2 N3 N2 179.9 180.0
N3 C2 N2 HN21 360.0 180.0
N3 C2 N2 HN22 180.0 0.1
HN21 N2 C2 N3 360.0 180.0
C2 N2 HN21 HN22 180.0 180.1
HN22 N2 C2 N3 180.0 0.1
C2 N2 HN22 HN21 180.0 179.9
N9 C4 N3 C5 179.5 179.1