PDB Chemical Component M7A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for M7A
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
OP2 |
P |
1.492 |
1.610 |
P |
O5' |
1.577 |
1.610 |
P |
OP1 |
1.497 |
1.481 |
C5' |
O5' |
1.413 |
1.429 |
C5' |
C4' |
1.496 |
1.530 |
O3' |
C3' |
1.407 |
1.429 |
C4' |
C3' |
1.512 |
1.551 |
C4' |
O4' |
1.448 |
1.445 |
C3' |
C2' |
1.517 |
1.548 |
O4' |
C1' |
1.409 |
1.437 |
O2' |
C2' |
1.412 |
1.429 |
C2' |
C1' |
1.521 |
1.542 |
C1' |
N9 |
1.479 |
1.469 |
C8 |
N9 |
1.451 |
1.480 |
C8 |
N7 |
1.427 |
1.482 |
N9 |
C4 |
1.326 |
1.394 |
C71 |
N7 |
1.477 |
1.469 |
N7 |
C5 |
1.322 |
1.407 |
C4 |
C5 |
1.464 |
1.395 |
C4 |
N3 |
1.339 |
1.331 |
C5 |
C6 |
1.462 |
1.394 |
N3 |
C2 |
1.329 |
1.318 |
C6 |
N6 |
1.340 |
1.390 |
C6 |
N1 |
1.334 |
1.332 |
C2 |
N1 |
1.333 |
1.317 |
C1' |
H1 |
1.099 |
1.090 |
C2 |
H2 |
1.080 |
1.080 |
C2' |
H3 |
1.101 |
1.090 |
C3' |
H4 |
1.100 |
1.090 |
C4' |
H5 |
1.100 |
1.090 |
C5' |
H6 |
1.100 |
1.090 |
C5' |
H7 |
1.100 |
1.090 |
C8 |
H8 |
1.100 |
1.090 |
C71 |
H9 |
1.100 |
1.089 |
C71 |
H10 |
1.099 |
1.091 |
C71 |
H11 |
1.100 |
1.090 |
N6 |
H12 |
1.000 |
0.970 |
N6 |
H13 |
1.000 |
0.970 |
O2' |
H14 |
0.950 |
0.967 |
O3' |
H15 |
0.950 |
0.967 |
OP2 |
H17 |
0.950 |
0.967 |
P |
OP3 |
1.598 |
1.609 |
C8 |
H18 |
1.100 |
1.090 |
OP3 |
H16 |
0.950 |
0.967 |
Bond Angles for M7A
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
P |
OP2 |
H17 |
109.5 |
113.9 |
OP2 |
P |
OP3 |
108.6 |
109.5 |
O5' |
C5' |
H6 |
109.4 |
109.5 |
O5' |
C5' |
H7 |
109.4 |
109.5 |
C5' |
C4' |
O4' |
108.4 |
110.7 |
C5' |
C4' |
H5 |
109.9 |
110.7 |
O3' |
C3' |
H4 |
109.3 |
110.8 |
C4' |
C3' |
H4 |
107.9 |
110.9 |
O4' |
C4' |
H5 |
110.6 |
110.5 |
C3' |
C2' |
H3 |
111.6 |
110.5 |
O4' |
C1' |
H1 |
109.5 |
109.9 |
O2' |
C2' |
H3 |
113.3 |
110.5 |
C2' |
C1' |
N9 |
112.7 |
109.8 |
C2' |
C1' |
H1 |
108.0 |
109.9 |
C1' |
N9 |
C8 |
117.9 |
111.0 |
C1' |
N9 |
C4 |
126.4 |
111.3 |
N9 |
C1' |
H1 |
108.5 |
109.9 |
N7 |
C8 |
N9 |
97.9 |
103.2 |
N9 |
C8 |
H8 |
112.3 |
110.7 |
N9 |
C8 |
H18 |
112.3 |
110.6 |
C8 |
N7 |
C71 |
109.7 |
111.0 |
N7 |
C8 |
H8 |
112.3 |
110.7 |
N7 |
C8 |
H18 |
112.3 |
110.7 |
N7 |
C71 |
H9 |
109.5 |
109.5 |
N7 |
C71 |
H10 |
109.5 |
109.4 |
N7 |
C71 |
H11 |
109.5 |
109.4 |
C5 |
C4 |
N3 |
118.3 |
118.9 |
C4 |
C5 |
C6 |
119.1 |
118.4 |
C5 |
C6 |
N6 |
123.9 |
120.6 |
C5 |
C6 |
N1 |
115.0 |
118.8 |
N3 |
C2 |
H2 |
118.1 |
118.9 |
N1 |
C6 |
N6 |
121.0 |
120.6 |
C6 |
N6 |
H12 |
109.5 |
120.0 |
C6 |
N6 |
H13 |
109.4 |
120.0 |
C2 |
N1 |
C6 |
123.8 |
120.9 |
N1 |
C2 |
H2 |
118.2 |
118.9 |
H6 |
C5' |
H7 |
109.5 |
109.5 |
H8 |
C8 |
H18 |
109.5 |
110.8 |
H9 |
C71 |
H10 |
109.4 |
109.5 |
H9 |
C71 |
H11 |
109.4 |
109.5 |
H10 |
C71 |
H11 |
109.5 |
109.5 |
H12 |
N6 |
H13 |
109.4 |
120.0 |
P |
OP3 |
H16 |
109.5 |
114.0 |
Torsion Angles for M7A
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP3 |
H16 |
132.5 |
300.0 |
P |
O5' |
C5' |
H6 |
289.0 |
60.1 |
P |
O5' |
C5' |
H7 |
48.9 |
300.0 |
O5' |
C5' |
C4' |
O4' |
296.9 |
70.8 |
O5' |
C5' |
C4' |
H5 |
175.9 |
308.0 |
H6 |
C5' |
O5' |
H7 |
240.1 |
120.1 |
C5' |
C4' |
C3' |
H4 |
317.0 |
322.7 |
O4' |
C4' |
C5' |
H5 |
121.0 |
122.9 |
C4' |
C3' |
O3' |
H4 |
238.7 |
236.4 |
O3' |
C3' |
C2' |
H3 |
280.9 |
257.7 |
O3' |
C3' |
C4' |
H4 |
122.0 |
123.6 |
C4' |
C3' |
C2' |
H3 |
156.5 |
139.5 |
C5' |
C4' |
O4' |
H5 |
239.4 |
237.0 |
O4' |
C4' |
C3' |
H4 |
74.7 |
81.3 |
C4' |
O4' |
C1' |
H1 |
116.5 |
93.2 |
O2' |
C2' |
C3' |
H3 |
127.0 |
122.7 |
C3' |
C2' |
C1' |
N9 |
98.5 |
121.4 |
C3' |
C2' |
C1' |
H1 |
218.3 |
242.4 |
C2' |
C1' |
O4' |
H1 |
243.0 |
240.5 |
N9 |
C1' |
O4' |
H1 |
119.6 |
121.0 |
C3' |
C2' |
O2' |
H3 |
233.9 |
237.4 |
O2' |
C2' |
C1' |
H1 |
334.5 |
1.2 |
O4' |
C1' |
C2' |
H1 |
118.0 |
119.5 |
C2' |
C1' |
N9 |
C8 |
259.3 |
185.3 |
C2' |
C1' |
N9 |
C4 |
78.2 |
68.0 |
N9 |
C1' |
C2' |
H1 |
240.2 |
239.0 |
O4' |
C1' |
N9 |
H1 |
239.9 |
238.9 |
C2' |
C1' |
N9 |
H1 |
119.5 |
121.0 |
N7 |
C8 |
N9 |
C1' |
179.1 |
213.1 |
C1' |
N9 |
C8 |
H8 |
297.2 |
94.7 |
C1' |
N9 |
C8 |
H18 |
61.0 |
331.5 |
C1' |
N9 |
C8 |
C4 |
179.0 |
239.3 |
C8 |
N9 |
C1' |
H1 |
139.8 |
64.4 |
N9 |
C8 |
N7 |
C71 |
180.4 |
146.3 |
N7 |
C8 |
N9 |
H8 |
241.9 |
118.4 |
N7 |
C8 |
N9 |
H18 |
118.0 |
241.6 |
H8 |
C8 |
N9 |
H18 |
236.1 |
123.2 |
C1' |
N9 |
C8 |
N7 |
179.1 |
213.1 |
N9 |
C8 |
N7 |
H8 |
118.1 |
241.6 |
N9 |
C8 |
N7 |
H18 |
242.0 |
118.3 |
C8 |
N7 |
C71 |
H9 |
180.0 |
52.0 |
C8 |
N7 |
C71 |
H10 |
300.0 |
172.0 |
C8 |
N7 |
C71 |
H11 |
60.0 |
291.9 |
H8 |
C8 |
N7 |
H18 |
123.9 |
236.8 |
C1' |
N9 |
C4 |
C8 |
181.1 |
120.5 |
C4 |
N9 |
C1' |
H1 |
318.7 |
307.0 |
C71 |
N7 |
C8 |
N9 |
180.4 |
146.3 |
C71 |
N7 |
C8 |
H8 |
62.3 |
264.7 |
C71 |
N7 |
C8 |
H18 |
298.4 |
27.9 |
H9 |
C71 |
N7 |
H10 |
240.0 |
240.0 |
H9 |
C71 |
N7 |
H11 |
120.0 |
120.0 |
H10 |
C71 |
N7 |
H11 |
240.0 |
240.0 |
C1' |
N9 |
C4 |
C5 |
180.2 |
137.3 |
C4 |
C5 |
C6 |
N6 |
180.6 |
180.0 |
C4 |
C5 |
C6 |
N1 |
0.7 |
0.5 |
C1' |
N9 |
C4 |
N3 |
1.5 |
317.5 |
N3 |
C4 |
C5 |
C6 |
359.1 |
359.7 |
C4 |
N3 |
C2 |
H2 |
179.7 |
180.3 |
C6 |
C5 |
C4 |
N3 |
359.1 |
359.7 |
N1 |
C6 |
C5 |
N6 |
180.1 |
180.5 |
C5 |
C6 |
N6 |
H12 |
180.2 |
10.8 |
C5 |
C6 |
N6 |
H13 |
300.1 |
190.6 |
C2 |
N1 |
C6 |
C5 |
359.7 |
359.5 |
N1 |
C2 |
N3 |
H2 |
180.0 |
179.8 |
C5 |
C6 |
N6 |
N1 |
180.1 |
180.5 |
C2 |
N1 |
C6 |
N6 |
179.8 |
180.0 |
H12 |
N6 |
C6 |
H13 |
240.0 |
180.1 |
C5 |
C6 |
N1 |
N6 |
179.9 |
179.5 |
N1 |
C6 |
N6 |
H12 |
0.0 |
190.2 |
N1 |
C6 |
N6 |
H13 |
120.0 |
10.1 |
C6 |
N1 |
C2 |
H2 |
180.1 |
180.0 |
C5 |
C6 |
N1 |
C2 |
359.7 |
359.5 |
N3 |
C2 |
N1 |
H2 |
180.0 |
180.2 |
C2' |
C1' |
H1 |
N9 |
237.6 |
239.0 |
H1 |
C1' |
N9 |
C8 |
139.8 |
64.4 |
H1 |
C1' |
N9 |
C4 |
318.7 |
307.0 |
H2 |
C2 |
N1 |
C6 |
180.1 |
180.0 |
H3 |
C2' |
C1' |
N9 |
339.7 |
2.8 |
H3 |
C2' |
C1' |
H1 |
99.5 |
123.8 |
H4 |
C3' |
C2' |
H3 |
42.9 |
21.3 |
C5' |
C4' |
H5 |
O4' |
119.6 |
122.9 |
H5 |
C4' |
C3' |
H4 |
192.5 |
199.7 |
O5' |
C5' |
H6 |
H7 |
119.9 |
239.9 |
H6 |
C5' |
C4' |
O4' |
176.8 |
190.8 |
H6 |
C5' |
C4' |
H5 |
55.9 |
67.9 |
O5' |
C5' |
H7 |
H6 |
240.2 |
120.0 |
H7 |
C5' |
C4' |
O4' |
57.0 |
310.8 |
H7 |
C5' |
C4' |
H5 |
296.0 |
188.0 |
N7 |
C8 |
H8 |
N9 |
109.1 |
246.3 |
N9 |
C8 |
H8 |
H18 |
125.4 |
236.9 |
H8 |
C8 |
N7 |
C71 |
62.3 |
264.7 |
N7 |
C8 |
H8 |
H18 |
234.5 |
123.2 |
N7 |
C71 |
H9 |
H10 |
120.0 |
120.0 |
N7 |
C71 |
H9 |
H11 |
240.0 |
240.0 |
H10 |
C71 |
H9 |
H11 |
120.0 |
120.1 |
N7 |
C71 |
H10 |
H9 |
240.0 |
240.0 |
N7 |
C71 |
H10 |
H11 |
120.0 |
119.9 |
H9 |
C71 |
H10 |
H11 |
240.0 |
239.9 |
N7 |
C71 |
H11 |
H9 |
120.0 |
120.0 |
N7 |
C71 |
H11 |
H10 |
240.0 |
240.1 |
H9 |
C71 |
H11 |
H10 |
120.0 |
120.1 |
C6 |
N6 |
H12 |
H13 |
120.0 |
179.9 |
C6 |
N6 |
H13 |
H12 |
240.0 |
180.1 |
H14 |
O2' |
C2' |
H3 |
306.1 |
57.4 |
H15 |
O3' |
C3' |
H4 |
301.3 |
297.8 |
H17 |
OP2 |
P |
OP3 |
233.9 |
300.0 |
OP3 |
P |
OP2 |
H17 |
233.9 |
300.0 |
N7 |
C8 |
H18 |
N9 |
250.9 |
113.7 |
N9 |
C8 |
H18 |
H8 |
234.6 |
123.1 |
H18 |
C8 |
N7 |
C71 |
298.4 |
27.9 |
N7 |
C8 |
H18 |
H8 |
125.5 |
236.8 |