PDB Chemical Component M7A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M7A

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP2 P 1.492 1.610
P O5' 1.577 1.610
P OP1 1.497 1.481
C5' O5' 1.413 1.429
C5' C4' 1.496 1.530
O3' C3' 1.407 1.429
C4' C3' 1.512 1.551
C4' O4' 1.448 1.445
C3' C2' 1.517 1.548
O4' C1' 1.409 1.437
O2' C2' 1.412 1.429
C2' C1' 1.521 1.542
C1' N9 1.479 1.469
C8 N9 1.451 1.480
C8 N7 1.427 1.482
N9 C4 1.326 1.394
C71 N7 1.477 1.469
N7 C5 1.322 1.407
C4 C5 1.464 1.395
C4 N3 1.339 1.331
C5 C6 1.462 1.394
N3 C2 1.329 1.318
C6 N6 1.340 1.390
C6 N1 1.334 1.332
C2 N1 1.333 1.317
C1' H1 1.099 1.090
C2 H2 1.080 1.080
C2' H3 1.101 1.090
C3' H4 1.100 1.090
C4' H5 1.100 1.090
C5' H6 1.100 1.090
C5' H7 1.100 1.090
C8 H8 1.100 1.090
C71 H9 1.100 1.089
C71 H10 1.099 1.091
C71 H11 1.100 1.090
N6 H12 1.000 0.970
N6 H13 1.000 0.970
O2' H14 0.950 0.967
O3' H15 0.950 0.967
OP2 H17 0.950 0.967
P OP3 1.598 1.609
C8 H18 1.100 1.090
OP3 H16 0.950 0.967

Bond Angles for M7A

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP2 H17 109.5 113.9
OP2 P OP3 108.6 109.5
O5' C5' H6 109.4 109.5
O5' C5' H7 109.4 109.5
C5' C4' O4' 108.4 110.7
C5' C4' H5 109.9 110.7
O3' C3' H4 109.3 110.8
C4' C3' H4 107.9 110.9
O4' C4' H5 110.6 110.5
C3' C2' H3 111.6 110.5
O4' C1' H1 109.5 109.9
O2' C2' H3 113.3 110.5
C2' C1' N9 112.7 109.8
C2' C1' H1 108.0 109.9
C1' N9 C8 117.9 111.0
C1' N9 C4 126.4 111.3
N9 C1' H1 108.5 109.9
N7 C8 N9 97.9 103.2
N9 C8 H8 112.3 110.7
N9 C8 H18 112.3 110.6
C8 N7 C71 109.7 111.0
N7 C8 H8 112.3 110.7
N7 C8 H18 112.3 110.7
N7 C71 H9 109.5 109.5
N7 C71 H10 109.5 109.4
N7 C71 H11 109.5 109.4
C5 C4 N3 118.3 118.9
C4 C5 C6 119.1 118.4
C5 C6 N6 123.9 120.6
C5 C6 N1 115.0 118.8
N3 C2 H2 118.1 118.9
N1 C6 N6 121.0 120.6
C6 N6 H12 109.5 120.0
C6 N6 H13 109.4 120.0
C2 N1 C6 123.8 120.9
N1 C2 H2 118.2 118.9
H6 C5' H7 109.5 109.5
H8 C8 H18 109.5 110.8
H9 C71 H10 109.4 109.5
H9 C71 H11 109.4 109.5
H10 C71 H11 109.5 109.5
H12 N6 H13 109.4 120.0
P OP3 H16 109.5 114.0

Torsion Angles for M7A

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP3 H16 132.5 300.0
P O5' C5' H6 289.0 60.1
P O5' C5' H7 48.9 300.0
O5' C5' C4' O4' 296.9 70.8
O5' C5' C4' H5 175.9 308.0
H6 C5' O5' H7 240.1 120.1
C5' C4' C3' H4 317.0 322.7
O4' C4' C5' H5 121.0 122.9
C4' C3' O3' H4 238.7 236.4
O3' C3' C2' H3 280.9 257.7
O3' C3' C4' H4 122.0 123.6
C4' C3' C2' H3 156.5 139.5
C5' C4' O4' H5 239.4 237.0
O4' C4' C3' H4 74.7 81.3
C4' O4' C1' H1 116.5 93.2
O2' C2' C3' H3 127.0 122.7
C3' C2' C1' N9 98.5 121.4
C3' C2' C1' H1 218.3 242.4
C2' C1' O4' H1 243.0 240.5
N9 C1' O4' H1 119.6 121.0
C3' C2' O2' H3 233.9 237.4
O2' C2' C1' H1 334.5 1.2
O4' C1' C2' H1 118.0 119.5
C2' C1' N9 C8 259.3 185.3
C2' C1' N9 C4 78.2 68.0
N9 C1' C2' H1 240.2 239.0
O4' C1' N9 H1 239.9 238.9
C2' C1' N9 H1 119.5 121.0
N7 C8 N9 C1' 179.1 213.1
C1' N9 C8 H8 297.2 94.7
C1' N9 C8 H18 61.0 331.5
C1' N9 C8 C4 179.0 239.3
C8 N9 C1' H1 139.8 64.4
N9 C8 N7 C71 180.4 146.3
N7 C8 N9 H8 241.9 118.4
N7 C8 N9 H18 118.0 241.6
H8 C8 N9 H18 236.1 123.2
C1' N9 C8 N7 179.1 213.1
N9 C8 N7 H8 118.1 241.6
N9 C8 N7 H18 242.0 118.3
C8 N7 C71 H9 180.0 52.0
C8 N7 C71 H10 300.0 172.0
C8 N7 C71 H11 60.0 291.9
H8 C8 N7 H18 123.9 236.8
C1' N9 C4 C8 181.1 120.5
C4 N9 C1' H1 318.7 307.0
C71 N7 C8 N9 180.4 146.3
C71 N7 C8 H8 62.3 264.7
C71 N7 C8 H18 298.4 27.9
H9 C71 N7 H10 240.0 240.0
H9 C71 N7 H11 120.0 120.0
H10 C71 N7 H11 240.0 240.0
C1' N9 C4 C5 180.2 137.3
C4 C5 C6 N6 180.6 180.0
C4 C5 C6 N1 0.7 0.5
C1' N9 C4 N3 1.5 317.5
N3 C4 C5 C6 359.1 359.7
C4 N3 C2 H2 179.7 180.3
C6 C5 C4 N3 359.1 359.7
N1 C6 C5 N6 180.1 180.5
C5 C6 N6 H12 180.2 10.8
C5 C6 N6 H13 300.1 190.6
C2 N1 C6 C5 359.7 359.5
N1 C2 N3 H2 180.0 179.8
C5 C6 N6 N1 180.1 180.5
C2 N1 C6 N6 179.8 180.0
H12 N6 C6 H13 240.0 180.1
C5 C6 N1 N6 179.9 179.5
N1 C6 N6 H12 0.0 190.2
N1 C6 N6 H13 120.0 10.1
C6 N1 C2 H2 180.1 180.0
C5 C6 N1 C2 359.7 359.5
N3 C2 N1 H2 180.0 180.2
C2' C1' H1 N9 237.6 239.0
H1 C1' N9 C8 139.8 64.4
H1 C1' N9 C4 318.7 307.0
H2 C2 N1 C6 180.1 180.0
H3 C2' C1' N9 339.7 2.8
H3 C2' C1' H1 99.5 123.8
H4 C3' C2' H3 42.9 21.3
C5' C4' H5 O4' 119.6 122.9
H5 C4' C3' H4 192.5 199.7
O5' C5' H6 H7 119.9 239.9
H6 C5' C4' O4' 176.8 190.8
H6 C5' C4' H5 55.9 67.9
O5' C5' H7 H6 240.2 120.0
H7 C5' C4' O4' 57.0 310.8
H7 C5' C4' H5 296.0 188.0
N7 C8 H8 N9 109.1 246.3
N9 C8 H8 H18 125.4 236.9
H8 C8 N7 C71 62.3 264.7
N7 C8 H8 H18 234.5 123.2
N7 C71 H9 H10 120.0 120.0
N7 C71 H9 H11 240.0 240.0
H10 C71 H9 H11 120.0 120.1
N7 C71 H10 H9 240.0 240.0
N7 C71 H10 H11 120.0 119.9
H9 C71 H10 H11 240.0 239.9
N7 C71 H11 H9 120.0 120.0
N7 C71 H11 H10 240.0 240.1
H9 C71 H11 H10 120.0 120.1
C6 N6 H12 H13 120.0 179.9
C6 N6 H13 H12 240.0 180.1
H14 O2' C2' H3 306.1 57.4
H15 O3' C3' H4 301.3 297.8
H17 OP2 P OP3 233.9 300.0
OP3 P OP2 H17 233.9 300.0
N7 C8 H18 N9 250.9 113.7
N9 C8 H18 H8 234.6 123.1
H18 C8 N7 C71 298.4 27.9
N7 C8 H18 H8 125.5 236.8