data_M7A
# 
_chem_comp.id                                    M7A 
_chem_comp.name                                  
;7-methyl, adenosine-5'-monophosphate
;
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H18 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-25 
_chem_comp.pdbx_modified_date                    2019-05-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        363.264 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     M7A 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6EK0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M7A "C1'" C1  C 0 1 N N R 236.658 251.762 238.961 -0.655 -0.504 0.308  "C1'" M7A 1  
M7A C2    C2  C 0 1 Y N N 236.784 250.381 243.247 -4.739 -1.521 0.036  C2    M7A 2  
M7A "C2'" C3  C 0 1 N N R 237.374 250.579 238.327 -0.604 -1.970 -0.166 "C2'" M7A 3  
M7A "C3'" C4  C 0 1 N N S 236.613 250.438 237.022 0.882  -2.198 -0.534 "C3'" M7A 4  
M7A C4    C5  C 0 1 Y N N 235.878 250.955 241.200 -2.911 -0.161 -0.306 C4    M7A 5  
M7A "C4'" C6  C 0 1 N N R 236.357 251.880 236.646 1.590  -1.069 0.259  "C4'" M7A 6  
M7A C5    C7  C 0 1 Y N N 234.553 250.661 241.748 -3.744 0.955  -0.229 C5    M7A 7  
M7A "C5'" C8  C 0 1 N N N 235.191 252.098 235.734 2.929  -0.713 -0.390 "C5'" M7A 8  
M7A C6    C9  C 0 1 Y N N 234.442 250.196 243.130 -5.107 0.753  -0.017 C6    M7A 9  
M7A C8    C10 C 0 1 N N N 234.252 251.346 239.546 -1.574 1.694  -0.172 C8    M7A 10 
M7A C71   C11 C 0 1 N N N 232.223 250.767 240.635 -3.370 3.161  0.561  C71   M7A 11 
M7A N1    N1  N 0 1 Y N N 235.599 250.094 243.786 -5.559 -0.493 0.114  N1    M7A 12 
M7A N3    N2  N 0 1 Y N N 236.943 250.803 241.997 -3.445 -1.373 -0.169 N3    M7A 13 
M7A N6    N3  N 0 1 N N N 233.281 249.889 243.725 -5.977 1.834  0.067  N6    M7A 14 
M7A N7    N4  N 0 1 N N N 233.689 250.879 240.771 -2.975 2.121  -0.399 N7    M7A 15 
M7A N9    N5  N 0 1 N N N 235.644 251.349 239.956 -1.599 0.256  -0.522 N9    M7A 16 
M7A "O2'" O1  O 0 1 N N N 238.711 250.960 238.082 -1.002 -2.850 0.887  "O2'" M7A 17 
M7A "O3'" O2  O 0 1 N N N 237.277 249.685 236.036 1.324  -3.484 -0.096 "O3'" M7A 18 
M7A "O4'" O3  O 0 1 N N N 236.062 252.502 237.920 0.668  0.040  0.167  "O4'" M7A 19 
M7A "O5'" O4  O 0 1 N N N 234.047 251.457 236.259 3.612  0.244  0.423  "O5'" M7A 20 
M7A OP1   O5  O 0 1 N N N 231.630 250.905 236.433 6.014  -0.265 -0.164 OP1   M7A 21 
M7A OP2   O6  O 0 1 N N N 232.741 251.545 234.180 4.939  1.710  -1.310 OP2   M7A 22 
M7A P     P1  P 0 1 N N N 232.614 251.723 235.656 5.056  0.845  0.043  P     M7A 23 
M7A H1    H1  H 0 1 N N N 237.411 252.383 239.467 -0.964 -0.463 1.352  H1    M7A 24 
M7A H2    H2  H 0 1 N N N 237.665 250.264 243.861 -5.139 -2.518 0.147  H2    M7A 25 
M7A H3    H3  H 0 1 N N N 237.286 249.674 238.947 -1.239 -2.110 -1.041 H3    M7A 26 
M7A H4    H4  H 0 1 N N N 235.643 249.969 237.246 1.041  -2.078 -1.606 H4    M7A 27 
M7A H5    H5  H 0 1 N N N 237.265 252.315 236.204 1.732  -1.362 1.299  H5    M7A 28 
M7A H6    H6  H 0 1 N N N 235.420 251.681 234.742 3.538  -1.612 -0.482 H6    M7A 29 
M7A H7    H7  H 0 1 N N N 234.996 253.177 235.642 2.752  -0.290 -1.379 H7    M7A 30 
M7A H8    H8  H 0 1 N N N 233.894 252.351 239.278 -0.895 2.238  -0.828 H8    M7A 31 
M7A H9    H9  H 0 1 N N N 231.793 250.407 241.581 -2.635 3.965  0.548  H9    M7A 32 
M7A H10   H10 H 0 1 N N N 231.801 251.753 240.393 -4.348 3.557  0.285  H10   M7A 33 
M7A H11   H11 H 0 1 N N N 231.983 250.057 239.830 -3.421 2.731  1.561  H11   M7A 34 
M7A H12   H12 H 0 1 N N N 233.455 249.599 244.666 -5.671 2.722  -0.175 H12   M7A 35 
M7A H13   H13 H 0 1 N N N 232.686 250.693 243.729 -6.890 1.700  0.366  H13   M7A 36 
M7A H14   H14 H 0 1 N N N 239.173 251.044 238.908 -0.989 -3.786 0.643  H14   M7A 37 
M7A H15   H15 H 0 1 N N N 237.400 248.795 236.346 0.847  -4.222 -0.499 H15   M7A 38 
M7A H17   H17 H 0 1 N N N 232.131 250.878 233.887 4.327  2.456  -1.247 H17   M7A 39 
M7A OP3   OP3 O 0 1 N Y N 232.351 253.269 235.961 5.577  1.787  1.239  OP3   M7A 40 
M7A H18   H18 H 0 1 N N N 234.065 250.655 238.711 -1.295 1.830  0.873  H18   M7A 41 
M7A H16   H16 H 0 1 N N N 231.627 253.353 236.570 6.444  2.184  1.078  H16   M7A 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M7A OP2   P     SING N N 1  
M7A P     "O5'" SING N N 2  
M7A P     OP1   DOUB N N 3  
M7A "C5'" "O5'" SING N N 4  
M7A "C5'" "C4'" SING N N 5  
M7A "O3'" "C3'" SING N N 6  
M7A "C4'" "C3'" SING N N 7  
M7A "C4'" "O4'" SING N N 8  
M7A "C3'" "C2'" SING N N 9  
M7A "O4'" "C1'" SING N N 10 
M7A "O2'" "C2'" SING N N 11 
M7A "C2'" "C1'" SING N N 12 
M7A "C1'" N9    SING N N 13 
M7A C8    N9    SING N N 14 
M7A C8    N7    SING N N 15 
M7A N9    C4    SING N N 16 
M7A C71   N7    SING N N 17 
M7A N7    C5    SING N N 18 
M7A C4    C5    DOUB Y N 19 
M7A C4    N3    SING Y N 20 
M7A C5    C6    SING Y N 21 
M7A N3    C2    DOUB Y N 22 
M7A C6    N6    SING N N 23 
M7A C6    N1    DOUB Y N 24 
M7A C2    N1    SING Y N 25 
M7A "C1'" H1    SING N N 26 
M7A C2    H2    SING N N 27 
M7A "C2'" H3    SING N N 28 
M7A "C3'" H4    SING N N 29 
M7A "C4'" H5    SING N N 30 
M7A "C5'" H6    SING N N 31 
M7A "C5'" H7    SING N N 32 
M7A C8    H8    SING N N 33 
M7A C71   H9    SING N N 34 
M7A C71   H10   SING N N 35 
M7A C71   H11   SING N N 36 
M7A N6    H12   SING N N 37 
M7A N6    H13   SING N N 38 
M7A "O2'" H14   SING N N 39 
M7A "O3'" H15   SING N N 40 
M7A OP2   H17   SING N N 41 
M7A P     OP3   SING N N 42 
M7A C8    H18   SING N N 43 
M7A OP3   H16   SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M7A InChI            InChI                1.03  "InChI=1S/C11H18N5O7P/c1-15-4-16(10-6(15)9(12)13-3-14-10)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3,5,7-8,11,17-18H,2,4H2,1H3,(H2,12,13,14)(H2,19,20,21)/t5-,7-,8-,11-/m1/s1" 
M7A InChIKey         InChI                1.03  FKHMVBQIIIBSCT-IOSLPCCCSA-N                                                                                                                                                 
M7A SMILES_CANONICAL CACTVS               3.385 "CN1CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c3ncnc(N)c13"                                                                                                           
M7A SMILES           CACTVS               3.385 "CN1CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c3ncnc(N)c13"                                                                                                                 
M7A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CN(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"                                                                                                           
M7A SMILES           "OpenEye OEToolkits" 2.0.6 "CN1CN(c2c1c(ncn2)N)C3C(C(C(O3)COP(=O)(O)O)O)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M7A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-azanyl-7-methyl-8~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M7A "Create component"       2017-09-25 EBI  
M7A "Initial release"        2018-01-24 RCSB 
M7A "Modify one letter code" 2019-05-02 EBI  
# 
