Atom Nomenclature for M6S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for M6S

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
N7 N7
C8 C8
C9 C9
O0 O0
N11 N11
C12 C12
C13 C13
O14 O14
N15 N15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
N24 N24
N25 N25
C26 C26
C27 C27
C28 C28
C29 C29
O30 O30
C10 C10
N2 N2
H1 H1
H21C H21C
H22C H22C
H61C H61C
H62C H62C
H8 H8
H31C H31C
H32C H32C
H41C H41C
H42C H42C
H51C H51C
H52C H52C
H7 H7
H281 H281
H282 H282
H12 H12
H271 H271
H272 H272
H261 H261
H262 H262
H15 H15
H161 H161
H162 H162
H18 H18
H22 H22
H19 H19
H21 H21
H24 H24
H251 H251
H252 H252
H2 H2
H101 H101
H102 H102
H103 H103