PDB Chemical Component M6P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M6P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.552	1.530
C1	O1	1.440	1.428
C1	O5	1.435	1.426
C1	H1	1.115	1.090
C2	C3	1.548	1.530
C2	O2	1.422	1.429
C2	H2	1.116	1.089
C3	C4	1.520	1.533
C3	O3	1.424	1.429
C3	H3	1.115	1.090
C4	C5	1.552	1.530
C4	O4	1.412	1.428
C4	H4	1.114	1.090
C5	C6	1.761	1.529
C5	O5	1.460	1.425
C5	H5	1.115	1.089
C6	O6	1.406	1.429
C6	H61	1.115	1.089
C6	H62	1.115	1.089
O1	HO1	0.950	0.967
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.949	0.967
O6	P	1.504	1.609
P	O1P	1.437	1.480
P	O2P	1.432	1.610
P	O3P	1.592	1.609
O2P	HOP2	0.949	0.967
O3P	HOP3	0.949	0.967

Bond Angles for M6P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	111.7	109.4
C2	C1	O5	109.1	109.8
C2	C1	H1	108.9	109.5
C1	C2	C3	110.4	109.1
C1	C2	O2	109.8	109.6
C1	C2	H2	108.4	109.5
O1	C1	O5	111.3	109.4
O1	C1	H1	106.5	109.3
C1	O1	HO1	111.7	106.9
O5	C1	H1	109.3	109.4
C1	O5	C5	115.7	107.6
C3	C2	O2	109.0	109.5
C3	C2	H2	109.3	109.7
C2	C3	C4	110.7	108.7
C2	C3	O3	109.7	109.8
C2	C3	H3	108.7	109.6
O2	C2	H2	109.9	109.4
C2	O2	HO2	109.8	106.8
C4	C3	O3	110.0	109.7
C4	C3	H3	108.4	109.6
C3	C4	C5	106.5	109.0
C3	C4	O4	110.0	109.7
C3	C4	H4	112.1	109.4
O3	C3	H3	109.4	109.5
C3	O3	HO3	109.7	106.8
C5	C4	O4	112.5	109.6
C5	C4	H4	109.7	109.5
C4	C5	C6	108.0	109.3
C4	C5	O5	109.9	109.8
C4	C5	H5	105.0	109.3
O4	C4	H4	106.1	109.5
C4	O4	HO4	110.1	106.9
C6	C5	O5	86.1	109.4
C6	C5	H5	124.1	109.4
C5	C6	O6	147.8	109.5
C5	C6	H61	99.4	109.5
C5	C6	H62	99.4	109.4
O5	C5	H5	122.4	109.5
O6	C6	H61	99.5	109.5
O6	C6	H62	99.5	109.4
C6	O6	P	119.3	106.8
H61	C6	H62	107.3	109.5
O6	P	O1P	106.7	109.4
O6	P	O2P	104.5	109.5
O6	P	O3P	108.4	109.5
O1P	P	O2P	119.1	109.4
O1P	P	O3P	108.2	109.5
O2P	P	O3P	109.5	109.5
P	O2P	HOP2	104.4	106.9
P	O3P	HOP3	108.4	106.8

Torsion Angles for M6P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	236.5	239.9
O1	C1	C2	H1	117.3	119.8
C2	C1	O1	HO1	180.0	180.1
O5	C1	C2	H1	240.8	239.9
C2	C1	O5	C5	303.4	292.5
C3	C2	C1	O2	120.2	119.9
C3	C2	C1	H2	240.3	240.0
C1	C2	C3	C4	302.7	306.3
C1	C2	C3	O3	181.2	186.4
C1	C2	C3	H3	61.7	66.0
O2	C2	C1	H2	120.1	120.1
C1	C2	O2	HO2	180.0	299.7
C2	C1	O1	O5	122.2	120.3
C2	C1	O1	H1	241.2	240.1
O1	C1	C2	C3	289.3	301.1
O1	C1	C2	O2	169.1	181.2
O1	C1	C2	H2	49.0	61.2
O5	C1	O1	H1	119.0	119.8
O1	C1	O5	C5	67.1	52.5
C2	C1	O5	O1	236.3	240.0
C2	C1	O5	H1	118.9	120.2
O5	C1	C2	C3	52.8	61.2
O5	C1	C2	O2	292.6	301.3
O5	C1	C2	H2	172.5	181.2
O1	C1	O5	H1	242.6	240.2
O5	C1	O1	HO1	57.8	59.8
C4	C5	O5	C1	61.2	67.6
C6	C5	O5	C1	169.0	187.6
C1	O5	C5	H5	297.5	307.5
C2	C1	H1	O1	120.6	119.8
C2	C1	H1	O5	240.9	239.6
H1	C1	C2	C3	172.0	181.4
H1	C1	C2	O2	51.8	61.4
H1	C1	C2	H2	291.7	301.4
O1	C1	H1	O5	120.4	119.8
H1	C1	O1	HO1	298.8	300.0
H1	C1	O5	C5	184.5	172.3
C3	C2	C1	O1	289.3	301.1
C3	C2	C1	O5	52.8	61.2
C3	C2	C1	H1	172.0	181.4
C1	C2	C3	O2	239.3	240.0
C1	C2	C3	H2	119.2	119.9
O2	C2	C3	H2	239.9	239.9
C3	C2	O2	HO2	59.0	180.0
C4	C3	C2	O3	121.5	119.9
C4	C3	C2	H3	241.0	240.3
C2	C3	C4	C5	59.1	53.6
C2	C3	C4	O4	181.3	173.7
C2	C3	C4	H4	299.1	293.8
O3	C3	C2	H3	119.5	120.3
C2	C3	O3	HO3	180.0	299.4
O2	C2	C1	O1	169.1	181.2
O2	C2	C1	O5	292.6	301.3
O2	C2	C1	H1	51.8	61.4
C1	C2	O2	C3	121.0	119.7
C1	C2	O2	H2	240.8	239.9
C3	C2	O2	H2	119.8	120.2
O2	C2	C3	C4	63.4	66.3
O2	C2	C3	O3	301.9	306.4
O2	C2	C3	H3	182.3	186.0
H2	C2	C1	O1	49.0	61.2
H2	C2	C1	O5	172.5	181.2
H2	C2	C1	H1	291.7	301.4
C1	C2	H2	C3	239.6	240.3
C1	C2	H2	O2	120.1	120.2
C3	C2	H2	O2	240.4	239.9
H2	C2	C3	C4	183.5	186.4
H2	C2	C3	O3	62.0	66.5
H2	C2	C3	H3	302.5	306.1
H2	C2	O2	HO2	299.2	59.8
C4	C3	C2	O2	63.4	66.3
C4	C3	C2	H2	183.5	186.4
C2	C3	C4	O3	238.7	240.0
C2	C3	C4	H3	119.1	119.7
O3	C3	C4	H3	240.4	239.7
C4	C3	O3	HO3	58.1	180.0
C5	C4	C3	O4	237.8	240.0
C5	C4	C3	H4	120.0	119.8
C3	C4	C5	C6	208.3	178.7
C3	C4	C5	O5	300.7	298.8
C3	C4	C5	H5	74.1	59.0
O4	C4	C3	H4	242.2	239.8
C3	C4	O4	HO4	180.0	60.3
O3	C3	C2	O2	301.9	306.4
O3	C3	C2	H2	62.0	66.5
C2	C3	O3	C4	121.9	119.3
C2	C3	O3	H3	240.9	239.6
C4	C3	O3	H3	119.0	120.3
O3	C3	C4	C5	180.4	173.7
O3	C3	C4	O4	302.6	293.7
O3	C3	C4	H4	60.5	53.9
H3	C3	C2	O2	182.3	186.0
H3	C3	C2	H2	302.5	306.1
C2	C3	H3	C4	239.7	240.8
C2	C3	H3	O3	119.7	120.5
C4	C3	H3	O3	240.1	239.7
H3	C3	C4	C5	300.0	293.9
H3	C3	C4	O4	62.2	53.9
H3	C3	C4	H4	180.0	174.1
H3	C3	O3	HO3	299.1	59.8
C1	O5	C5	C4	61.2	67.6
C5	C4	C3	O3	180.4	173.7
C5	C4	C3	H3	300.0	293.9
C3	C4	C5	O4	120.6	120.1
C3	C4	C5	H4	238.5	240.3
O4	C4	C5	H4	117.8	120.2
C5	C4	O4	HO4	298.6	180.0
C6	C5	C4	O5	267.6	239.9
C6	C5	C4	H5	134.2	119.8
C4	C5	C6	O6	289.3	180.3
C4	C5	C6	H61	54.6	300.4
C4	C5	C6	H62	164.1	60.4
O5	C5	C4	H5	226.6	239.8
O4	C4	C3	O3	302.6	293.7
O4	C4	C3	H3	62.2	53.9
C3	C4	O4	C5	241.4	240.3
C3	C4	O4	H4	121.5	120.1
C5	C4	O4	H4	240.1	239.8
O4	C4	C5	C6	87.6	58.6
O4	C4	C5	O5	180.1	178.7
O4	C4	C5	H5	313.5	298.9
H4	C4	C3	O3	60.5	53.9
H4	C4	C3	H3	180.0	174.1
C3	C4	H4	C5	118.1	119.5
C3	C4	H4	O4	239.8	239.7
C5	C4	H4	O4	121.8	120.3
H4	C4	C5	C6	329.8	298.4
H4	C4	C5	O5	62.2	58.5
H4	C4	C5	H5	195.6	178.7
H4	C4	O4	HO4	58.5	300.2
C1	O5	C5	C6	169.0	187.6
C6	C5	C4	O4	87.6	58.6
C6	C5	C4	H4	329.8	298.4
C4	C5	C6	O5	109.7	120.3
C4	C5	C6	H5	236.8	240.3
O5	C5	C6	H5	127.1	119.9
O6	C6	C5	H61	234.7	240.0
O6	C6	C5	H62	125.3	120.0
C5	C6	O6	P	222.9	180.0
H61	C6	C5	H62	250.6	240.0
C5	O5	C1	H1	184.5	172.3
O5	C5	C4	O4	180.1	178.7
O5	C5	C4	H4	62.2	58.5
C4	C5	O5	C6	252.2	240.0
C4	C5	O5	H5	123.7	120.1
C6	C5	O5	H5	231.5	240.1
O5	C5	C6	O6	179.7	60.0
O5	C5	C6	H61	304.9	180.0
O5	C5	C6	H62	54.4	300.0
H5	C5	C4	O4	313.5	298.9
H5	C5	C4	H4	195.6	178.7
C4	C5	H5	C6	124.6	119.7
C4	C5	H5	O5	234.0	239.6
C6	C5	H5	O5	109.5	119.9
H5	C5	C6	O6	52.6	300.0
H5	C5	C6	H61	177.8	60.1
H5	C5	C6	H62	287.3	180.1
O6	C6	C5	O5	179.7	60.0
O6	C6	C5	H5	52.6	300.0
C5	C6	O6	H61	125.2	120.0
C5	C6	O6	H62	234.7	240.0
H61	C6	O6	H62	109.5	120.0
C6	O6	P	O1P	53.6	60.1
C6	O6	P	O2P	180.6	180.0
C6	O6	P	O3P	297.3	300.0
H61	C6	C5	O5	304.9	180.0
H61	C6	C5	H5	177.8	60.1
C5	C6	H61	O6	206.2	240.0
C5	C6	H61	H62	103.0	120.0
O6	C6	H61	H62	256.8	240.0
H61	C6	O6	P	97.6	59.9
H62	C6	C5	O5	54.4	300.0
H62	C6	C5	H5	287.3	180.1
C5	C6	H62	O6	153.8	120.0
C5	C6	H62	H61	257.0	240.0
O6	C6	H62	H61	103.2	120.0
H62	C6	O6	P	348.1	299.9
HO1	O1	C1	O5	57.8	59.8
HO1	O1	C1	H1	298.8	300.0
HO2	O2	C2	H2	299.2	59.8
HO3	O3	C3	H3	299.1	59.8
HO4	O4	C4	H4	58.5	300.2
P	O6	C6	H61	97.6	59.9
P	O6	C6	H62	348.1	299.9
O1P	P	O6	O2P	233.0	240.1
O1P	P	O6	O3P	116.3	120.1
O2P	P	O6	O3P	243.3	240.0
O6	P	O2P	HOP2	180.0	180.0
O6	P	O3P	HOP3	180.0	300.0
O6	P	O1P	O2P	117.7	119.9
O6	P	O1P	O3P	243.6	239.9
O2P	P	O1P	O3P	125.9	120.0
O1P	P	O2P	HOP2	298.9	299.9
O1P	P	O3P	HOP3	64.7	180.0
O6	P	O2P	O1P	241.1	240.1
O6	P	O2P	O3P	115.9	120.1
O1P	P	O2P	O3P	234.8	240.0
O2P	P	O3P	HOP3	293.4	60.1
O6	P	O3P	O1P	115.3	120.0
O6	P	O3P	O2P	246.6	240.0
O1P	P	O3P	O2P	131.3	119.9
O3P	P	O2P	HOP2	64.1	59.9
HOP2	O2P	P	O3P	64.1	59.9