Atom Nomenclature for M67

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for M67

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
N4 N4
C5 C5
O6 O6
C7 C7
N8 N8
C9 C9
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
O18 O18
N19 N19
C20 C20
C21 C21
C22 C22
C24 C24
O25 O25
N26 N26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
N35 N35
N36 N36
H23 H23
H11C H11C
H12C H12C
H21C H21C
H22C H22C
H31C H31C
H32C H32C
H4 H4
H71C H71C
H72C H72C
H8 H8
H9 H9
H11 H11
H121 H121
H122 H122
H161 H161
H162 H162
H131 H131
H132 H132
H141 H141
H142 H142
H151 H151
H152 H152
H201 H201
H202 H202
H22 H22
H211 H211
H212 H212
H26 H26
H271 H271
H272 H272
H29 H29
H33 H33
H30 H30
H32 H32
H35 H35
H361 H361
H362 H362