PDB Chemical Component M60

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for M60

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C11 N1 1.324 1.348
N1 CA2 1.458 1.465
N1 HN1 1.000 0.969
CA2 C20 1.524 1.507
C20 O2 1.231 1.212
C20 N3 1.328 1.348
O3 C30 1.233 1.212
CA3 C30 1.523 1.508
C30 N4 1.303 1.347
N3 CA3 1.454 1.465
N3 HN3 1.001 0.970
N4 N5 1.398 1.401
N4 HN4 1.000 0.971
C12 N5 1.467 1.465
N5 C16 1.401 1.348
O5 C1 1.231 1.213
C1 N6 1.396 1.347
N6 C14 1.454 1.466
N6 HN6 1.000 0.969
C16 O6 1.235 1.212
O7 C17 1.346 1.342
O7 HO7 0.950 0.967
O8 C17 1.228 1.208
O9 C2 1.433 1.429
O9 HO9 0.951 0.966
C3 C16 1.533 1.508
C3 C2 1.534 1.530
C3 H10 1.100 1.089
C3 H10A 1.100 1.090
O11 C11 1.225 1.216
C11 O21 1.373 1.346
C17 C12 1.516 1.507
C12 H12 1.100 1.090
C12 H12A 1.100 1.089
C64 C13 1.419 1.382
C13 C23 1.416 1.383
C13 H13 1.080 1.080
C14 C77 1.538 1.531
C14 H14 1.100 1.090
C14 H14A 1.100 1.090
C2 C1 1.545 1.507
C21 C31 1.545 1.506
C21 O21 1.457 1.452
C21 H21 1.100 1.091
C21 H21A 1.101 1.090
C34 C23 1.422 1.382
C23 H23 1.080 1.080
C81 C31 1.448 1.382
C31 C41 1.459 1.383
C44 C34 1.429 1.383
C34 H34 1.080 1.080
C41 C51 1.447 1.383
C41 H41 1.080 1.080
C77 C44 1.514 1.507
C54 C44 1.428 1.382
C61 C51 1.449 1.381
C51 H51 1.080 1.080
C54 C64 1.428 1.383
C54 H54 1.080 1.080
C71 C61 1.445 1.382
C61 H61 1.080 1.080
C64 H64 1.080 1.079
C81 C71 1.448 1.383
C71 H71 1.080 1.080
C77 H77 1.100 1.090
C77 H77A 1.100 1.090
C81 H81 1.080 1.080
C2 H94 1.100 1.090
CB2 CA2 1.536 1.530
CA2 HA2 1.100 1.089
CA3 CB3 1.545 1.530
CA3 HA3 1.100 1.089
CG2 CB2 1.526 1.530
CB2 HB2 1.100 1.090
CB2 HB2A 1.100 1.090
CZ2 CB3 1.522 1.530
CZ1 CB3 1.518 1.530
CB3 HB3 1.100 1.090
OZ1 CD2 1.248 1.209
CD2 OZ2 1.252 1.342
CD2 CG2 1.520 1.507
CG2 HG2 1.100 1.090
CG2 HG2A 1.100 1.090
CZ1 HZ1 1.100 1.090
CZ1 HZ1A 1.100 1.090
CZ1 HZ1B 1.100 1.089
CZ2 HZ2 1.100 1.091
CZ2 HZ2A 1.100 1.090
CZ2 HZ2B 1.100 1.090
OZ2 HOZ2 0.950 0.967

Bond Angles for M60

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C11 N1 CA2 123.3 120.0
C11 N1 HN1 118.3 120.0
O11 C11 N1 148.5 119.9
O21 C11 N1 84.4 120.0
CA2 N1 HN1 118.4 120.0
N1 CA2 C20 110.1 109.5
N1 CA2 HA2 108.3 109.5
CA2 C20 O2 120.9 120.0
CA2 C20 N3 116.1 120.0
C20 CA2 HA2 109.2 109.5
O2 C20 N3 123.0 120.0
C20 N3 CA3 121.3 120.0
C20 N3 HN3 119.4 120.0
O3 C30 N4 117.0 120.0
CA3 C30 N4 121.7 120.0
N3 CA3 C30 111.9 109.4
C30 CA3 CB3 108.8 109.5
C30 CA3 HA3 109.0 109.5
C30 N4 N5 148.2 120.0
C30 N4 HN4 105.9 120.0
CA3 N3 HN3 119.4 120.0
N3 CA3 CB3 111.4 109.4
N3 CA3 HA3 106.3 109.5
N5 N4 HN4 105.9 120.0
N4 N5 C16 122.3 120.0
C12 N5 C16 122.9 120.0
N5 C16 O6 121.2 120.0
N5 C16 C3 117.0 120.0
O5 C1 N6 124.0 120.0
C1 N6 C14 123.7 120.0
C1 N6 HN6 118.2 120.0
C2 C1 N6 111.7 120.0
N6 C14 H14 108.6 109.5
N6 C14 H14A 108.6 109.5
C17 O7 HO7 109.5 117.0
O7 C17 O8 120.3 120.0
O7 C17 C12 112.5 120.0
O8 C17 C12 127.2 120.0
C2 O9 HO9 109.5 114.0
O9 C2 C3 107.8 109.5
O9 C2 C1 109.0 109.5
O9 C2 H94 112.2 109.5
C16 C3 C2 113.4 109.4
C16 C3 H10 108.2 109.5
C16 C3 H10A 108.2 109.4
C2 C3 H10 108.2 109.5
C2 C3 H10A 108.2 109.5
C3 C2 C1 113.1 109.5
C3 C2 H94 108.0 109.5
H10 C3 H10A 110.7 109.5
O11 C11 O21 127.0 120.0
C17 C12 H12 109.0 109.4
C17 C12 H12A 109.0 109.5
H12 C12 H12A 110.0 109.5
C64 C13 H13 120.0 120.1
C13 C23 H23 120.0 120.0
C14 C77 H77 108.4 109.5
C14 C77 H77A 108.4 109.5
H14 C14 H14A 110.4 109.5
C31 C21 H21 108.2 109.5
C31 C21 H21A 108.2 109.5
C21 C31 C41 123.3 120.0
H21 C21 H21A 110.7 109.5
C34 C23 H23 120.0 120.0
C44 C34 C23 120.8 120.0
C23 C34 H34 119.6 120.0
C81 C31 C41 119.0 120.0
C31 C41 C51 120.2 120.0
C31 C41 H41 119.9 120.0
C44 C34 H34 119.6 120.0
C41 C51 H51 119.9 119.9
C61 C51 H51 119.9 120.0
C71 C61 C51 119.9 120.0
C51 C61 H61 120.1 120.1
C54 C64 H64 119.8 120.0
C71 C61 H61 120.1 119.9
C81 C71 C61 119.9 120.0
C61 C71 H71 120.1 120.0
C81 C71 H71 120.0 120.0
C71 C81 H81 119.6 120.0
H77 C77 H77A 110.5 109.5
CB2 CA2 HA2 108.6 109.5
CB3 CA3 HA3 109.5 109.5
CA3 CB3 HB3 109.1 109.5
CG2 CB2 HB2 107.9 109.5
CG2 CB2 HB2A 107.9 109.5
HB2 CB2 HB2A 111.0 109.5
CZ2 CB3 HB3 108.5 109.5
CZ1 CB3 HB3 108.7 109.4
OZ1 CD2 OZ2 122.9 120.0
CD2 OZ2 HOZ2 109.5 117.0
CD2 CG2 HG2 108.2 109.4
CD2 CG2 HG2A 108.3 109.4
HG2 CG2 HG2A 110.7 109.5
HZ1 CZ1 HZ1A 109.5 109.5
HZ1 CZ1 HZ1B 109.5 109.4
HZ1A CZ1 HZ1B 109.5 109.5
HZ2 CZ2 HZ2A 109.4 109.5
HZ2 CZ2 HZ2B 109.4 109.5
HZ2A CZ2 HZ2B 109.5 109.5

Torsion Angles for M60

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CA2 N1 C11 HN1 180.0 180.2
C11 N1 CA2 C20 218.5 204.7
C11 N1 CA2 HA2 337.9 324.8
O11 C11 N1 O21 177.4 180.0
C11 N1 CA2 HN1 180.0 179.8
O11 C11 N1 CA2 357.8 360.0
O21 C11 N1 CA2 180.4 180.0
N1 CA2 C20 O2 316.8 0.1
N1 CA2 C20 N3 136.5 180.0
C20 CA2 N1 HA2 240.7 239.9
CB2 CA2 N1 HA2 118.9 120.0
C11 N1 HN1 CA2 180.0 180.2
O11 C11 N1 HN1 177.8 179.7
O21 C11 N1 HN1 0.4 359.7
HN1 N1 CA2 C20 38.6 24.9
HN1 N1 CA2 HA2 157.9 145.0
C20 CA2 N1 HN1 38.6 24.9
N1 CA2 C20 HA2 118.8 120.1
O2 C20 CA2 N3 180.3 180.1
CA2 C20 N3 CA3 180.1 180.0
CA2 C20 N3 HN3 0.1 0.1
CB2 CA2 C20 HA2 241.0 240.0
CA2 C20 O2 N3 179.7 179.9
O2 C20 CA2 HA2 197.9 240.0
O2 C20 N3 CA3 359.8 360.0
O2 C20 N3 HN3 179.8 180.0
CA2 C20 N3 O2 180.3 180.1
N3 C20 CA2 HA2 17.7 59.9
C20 N3 CA3 C30 253.6 205.0
CA3 N3 C20 HN3 180.0 180.0
C20 N3 CA3 CB3 131.7 85.0
C20 N3 CA3 HA3 12.4 325.0
CA3 C30 O3 N4 180.2 180.0
O3 C30 CA3 CB3 98.6 104.2
O3 C30 CA3 HA3 217.9 224.3
O3 C30 N4 N5 359.6 354.3
O3 C30 N4 HN4 179.6 174.4
O3 C30 CA3 N4 179.8 180.0
CA3 C30 N4 N5 179.5 174.4
CA3 C30 N4 HN4 359.5 354.5
C30 CA3 N3 HN3 73.6 25.0
N3 CA3 C30 CB3 236.6 240.0
N3 CA3 C30 HA3 117.2 120.0
CB3 CA3 C30 HA3 240.6 240.0
C30 CA3 CB3 HB3 51.9 304.9
N3 CA3 C30 N4 155.3 164.2
N4 C30 CA3 CB3 278.7 284.2
N4 C30 CA3 HA3 38.1 44.2
N5 N4 C30 HN4 180.0 179.9
C30 N4 N5 C16 287.8 105.0
C20 N3 CA3 HN3 180.0 180.0
C30 CA3 N3 CB3 121.9 120.0
C30 CA3 N3 HA3 241.2 240.0
CB3 CA3 N3 HA3 119.2 120.0
N3 CA3 CB3 HB3 175.6 64.9
C20 N3 HN3 CA3 180.0 180.0
HN3 N3 CA3 C30 73.6 25.0
HN3 N3 CA3 CB3 311.7 265.0
HN3 N3 CA3 HA3 192.4 145.0
C30 N4 N5 HN4 180.0 180.1
C12 N5 N4 C16 180.3 180.1
N4 N5 C16 O6 180.4 180.1
N4 N5 C16 C3 359.4 0.1
C30 N4 HN4 N5 180.0 179.9
HN4 N4 N5 C16 107.8 284.9
C12 N5 N4 HN4 288.1 105.0
N4 N5 C12 C16 179.7 179.9
C12 N5 C16 O6 0.0 360.0
C12 N5 C16 C3 179.1 180.0
C16 N5 N4 HN4 107.8 284.9
N5 C16 C3 C2 178.7 180.0
N5 C16 C3 H10 298.7 300.0
N5 C16 C3 H10A 58.7 60.0
O5 C1 N6 C14 359.9 0.0
O5 C1 N6 HN6 179.9 180.0
C2 C1 O5 N6 180.0 180.1
O9 C2 C1 O5 287.9 355.0
C3 C2 C1 O5 47.8 115.0
C1 N6 C14 H14 266.9 299.9
C1 N6 C14 H14A 26.9 60.0
O9 C2 C1 N6 107.9 175.0
C3 C2 C1 N6 227.8 295.0
C1 N6 C14 HN6 180.0 180.0
C2 C1 N6 C14 179.9 180.0
N6 C14 C77 H77 299.4 300.0
N6 C14 C77 H77A 59.4 60.0
H14 C14 N6 H14A 240.0 239.9
C1 N6 HN6 C14 180.0 180.0
C2 C1 N6 HN6 359.9 360.0
HN6 N6 C14 H14 86.8 120.0
HN6 N6 C14 H14A 206.9 240.0
N5 C16 O6 C3 179.0 180.0
O8 C17 O7 C12 180.0 180.0
O7 C17 C12 H12 41.7 60.1
O7 C17 C12 H12A 281.7 300.0
HO7 O7 C17 O8 360.0 360.0
HO7 O7 C17 C12 180.0 180.0
O8 C17 O7 HO7 360.0 360.0
O7 C17 O8 C12 180.0 180.0
O8 C17 C12 H12 221.7 240.0
O8 C17 C12 H12A 101.7 120.0
C16 C3 C2 O9 276.7 295.0
O9 C2 C3 H10 156.7 175.0
O9 C2 C3 H10A 36.7 55.0
C3 C2 O9 C1 236.8 240.0
C3 C2 O9 H94 118.8 120.0
HO9 O9 C2 C3 180.0 300.0
HO9 O9 C2 C1 303.2 60.0
HO9 O9 C2 H94 61.2 180.0
N5 C16 C3 O6 181.0 180.0
O9 C2 C3 C16 276.7 295.0
C2 C3 C16 H10 240.0 240.0
C2 C3 C16 H10A 120.0 120.0
C16 C3 C2 C1 156.1 175.0
C16 C3 C2 H94 38.1 55.0
H10 C3 C16 H10A 240.0 240.0
C3 C2 O9 HO9 180.0 300.0
O9 C2 C3 C1 120.6 120.0
O9 C2 C3 H94 238.6 239.9
C16 C3 C2 H10 120.0 120.0
C16 C3 C2 H10A 240.0 240.0
H10 C3 C2 H10A 120.0 120.0
C16 C3 H10 C2 236.8 240.0
C16 C3 H10 H10A 118.4 120.0
C2 C3 H10 H10A 241.6 240.0
H10 C3 C2 C1 36.1 55.0
H10 C3 C2 H94 278.1 295.0
C16 C3 H10A C2 123.2 120.0
C16 C3 H10A H10 241.6 240.0
C2 C3 H10A H10 118.4 120.0
H10A C3 C2 C1 276.1 295.0
H10A C3 C2 H94 158.1 175.0
O21 C11 O11 N1 176.7 180.0
O11 C11 O21 N1 181.7 180.0
C12 C17 O7 HO7 180.0 180.0
O7 C17 C12 O8 180.0 180.0
H12 C12 C17 H12A 120.0 120.0
H12 C12 N5 C16 220.6 35.0
C17 C12 H12 H12A 240.6 239.9
H12A C12 N5 C16 340.5 155.0
C17 C12 H12A H12 119.4 120.0
C64 C13 C23 H23 180.1 180.3
C34 C23 C13 H23 180.0 180.0
C13 C23 C34 H34 180.0 180.0
H13 C13 C23 H23 0.1 0.0
C1 N6 C14 C77 146.9 180.0
H77 C77 C14 H77A 240.0 240.0
N6 C14 H14 H14A 118.9 120.0
H14 C14 C77 H77 179.4 180.0
H14 C14 C77 H77A 299.4 300.0
N6 C14 H14A H14 241.1 240.0
H14A C14 C77 H77 59.3 60.0
H14A C14 C77 H77A 179.3 180.0
O5 C1 C2 N6 180.0 179.9
C1 C2 O9 HO9 303.2 60.0
O9 C2 C1 C3 240.1 240.0
O9 C2 C1 H94 121.4 120.0
C1 C2 C3 H10 36.1 55.0
C1 C2 C3 H10A 276.1 295.0
C3 C2 C1 H94 241.4 240.0
H21 C21 C31 H21A 240.0 120.0
C81 C31 C21 C41 180.1 179.7
C21 C31 C41 C51 180.1 180.0
C21 C31 C41 H41 0.1 359.9
C21 O21 C11 N1 177.6 180.0
C31 C21 H21 H21A 118.4 240.0
H21 C21 C31 C41 119.6 330.1
C31 C21 H21A H21 241.6 120.0
H21A C21 C31 C41 239.6 210.0
C13 C23 C34 H23 180.0 180.0
C44 C34 C23 H34 180.0 179.9
C44 C34 C23 H23 180.0 180.0
H23 C23 C34 H34 0.0 0.0
C81 C31 C21 H21 299.7 149.7
C81 C31 C21 H21A 59.7 29.7
C21 C31 C81 C41 179.9 180.3
C81 C31 C41 C51 0.0 0.3
C81 C31 C41 H41 180.0 180.3
C41 C31 C21 H21 119.6 330.1
C41 C31 C21 H21A 239.6 210.0
C31 C41 C51 H51 180.0 179.9
C23 C34 C44 H34 180.0 180.0
H34 C34 C23 H23 0.0 0.0
C44 C34 H34 C23 180.0 180.1
C31 C41 C51 H41 180.0 180.0
C61 C51 C41 H51 180.0 180.1
C41 C51 C61 H61 179.9 180.0
C31 C41 H41 C51 180.0 180.0
H41 C41 C51 H51 360.0 360.0
C77 C44 C34 H34 359.8 360.0
C54 C44 C34 H34 179.8 180.0
C31 C41 C51 C61 0.0 0.0
C41 C51 C61 H51 180.0 179.9
C71 C61 C51 H61 180.0 180.0
C81 C71 C61 C51 0.1 359.8
C51 C61 C71 H71 180.1 180.0
C71 C61 C51 H51 179.9 180.0
H51 C51 C61 H61 359.9 0.0
C54 C64 C13 H13 179.9 179.7
H54 C54 C64 H64 359.9 359.6
C51 C61 C71 H61 180.0 180.0
C81 C71 C61 H71 180.0 179.7
C61 C71 C81 H81 179.9 180.3
H61 C61 C51 H51 359.9 0.0
C71 C61 H61 C51 180.0 180.0
C81 C71 C61 H61 180.2 179.8
H61 C61 C71 H71 0.1 0.0
H64 C64 C13 H13 360.0 0.3
C71 C81 C31 C41 0.0 359.4
C61 C71 C81 H71 180.0 180.3
H71 C71 C61 C51 180.1 180.0
H71 C71 C61 H61 0.1 0.0
C81 C71 H71 C61 180.0 180.3
H71 C71 C81 H81 359.9 0.0
C14 C77 H77 H77A 118.7 120.0
C14 C77 H77A H77 241.3 240.0
H81 C81 C31 C41 180.0 179.7
H81 C81 C71 C61 179.9 180.3
H81 C81 C71 H71 359.9 0.0
H94 C2 C1 N6 346.5 55.0
H94 C2 O9 HO9 61.2 180.0
O9 C2 H94 C3 118.7 120.0
O9 C2 H94 C1 240.6 240.0
H94 C2 C3 H10 278.1 295.0
H94 C2 C3 H10A 158.1 175.0
C3 C2 H94 C1 121.9 120.0
CB2 CA2 N1 HN1 276.8 265.0
N1 CA2 CB2 HA2 241.2 240.0
CB2 CA2 C20 N3 258.7 299.9
C20 CA2 CB2 HA2 119.3 120.0
HA2 CA2 N1 HN1 157.9 145.0
N1 CA2 HA2 C20 240.1 240.0
HA2 CA2 C20 O2 197.9 240.0
HA2 CA2 C20 N3 17.7 59.9
CB3 CA3 C30 N4 278.7 284.2
N3 CA3 CB3 C30 123.7 120.0
C30 CA3 CB3 HA3 119.0 120.0
CB3 CA3 N3 HN3 311.7 265.0
N3 CA3 CB3 HA3 242.7 240.0
CZ2 CB3 CA3 HB3 241.0 240.0
CZ1 CB3 CA3 HB3 119.1 119.9
HA3 CA3 C30 N4 38.1 44.2
N3 CA3 HA3 C30 239.3 240.0
C30 CA3 HA3 CB3 241.1 239.9
HA3 CA3 N3 HN3 192.4 145.0
N3 CA3 HA3 CB3 120.4 120.0
HA3 CA3 CB3 HB3 292.8 184.9
CG2 CB2 CA2 HA2 44.6 55.0
HB2 CB2 CG2 HB2A 120.0 120.0
HB2 CB2 CA2 HA2 164.6 175.0
CG2 CB2 HB2 HB2A 241.9 240.0
HB2A CB2 CA2 HA2 284.6 295.0
CG2 CB2 HB2A HB2 118.1 120.0
CZ2 CB3 CA3 HA3 173.9 64.8
CA3 CB3 CZ2 HB3 119.3 120.0
CZ1 CB3 CZ2 HB3 240.9 240.1
CZ1 CB3 CA3 HA3 52.0 304.8
CA3 CB3 CZ1 HB3 240.7 240.1
CZ2 CB3 CZ1 HB3 119.0 120.0
HB3 CB3 CA3 HA3 292.8 184.9
OZ1 CD2 OZ2 HOZ2 360.0 0.0
OZ1 CD2 CG2 HG2 116.6 240.0
OZ1 CD2 CG2 HG2A 356.6 120.0
OZ2 CD2 CG2 HG2 296.9 60.0
OZ2 CD2 CG2 HG2A 176.9 300.0
CD2 CG2 CB2 HB2 60.2 60.0
CD2 CG2 CB2 HB2A 300.2 300.0
HG2 CG2 CD2 HG2A 120.0 120.0
HG2 CG2 CB2 HB2 180.1 180.0
HG2 CG2 CB2 HB2A 60.1 59.9
CD2 CG2 HG2 HG2A 241.5 240.0
HG2A CG2 CB2 HB2 300.2 300.0
HG2A CG2 CB2 HB2A 180.2 180.0
CD2 CG2 HG2A HG2 118.5 119.9
HZ1 CZ1 CB3 HB3 299.3 174.8
HZ1A CZ1 HZ1 HZ1B 120.0 120.0
HZ1A CZ1 CB3 HB3 59.3 294.7
HZ1 CZ1 HZ1A HZ1B 240.0 240.0
HZ1B CZ1 CB3 HB3 179.3 54.8
HZ1 CZ1 HZ1B HZ1A 120.0 120.0
HZ2 CZ2 CB3 HB3 60.7 300.0
HZ2A CZ2 HZ2 HZ2B 120.0 120.0
HZ2A CZ2 CB3 HB3 180.7 60.0
HZ2 CZ2 HZ2A HZ2B 240.0 240.0
HZ2B CZ2 CB3 HB3 300.7 180.0
HZ2 CZ2 HZ2B HZ2A 119.9 120.1