Atom Nomenclature for M60

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for M60

Atom Name (V3) Atom Name (V2)
C11 C11
O11 O11
O21 O21
C21 C21
C31 C31
C81 C81
C71 C71
C61 C61
C51 C51
C41 C41
N1 N1
CA2 CA2
C20 C20
O2 O2
CB2 CB2
CG2 CG2
CD2 CD2
OZ1 OZ1
OZ2 OZ2
N3 N3
CA3 CA3
C30 C30
O3 O3
CB3 CB3
CZ1 CZ1
CZ2 CZ2
N4 N4
N5 N5
O5 O5
O6 O6
O7 O7
O8 O8
O9 O9
C3 C3
C12 C12
C1 C1
C16 C16
C17 C17
C2 C2
C44 C44
C34 C34
C23 C23
C13 C13
C64 C64
C54 C54
C77 C77
C14 C14
N6 N6
H21 H21
H21A H21A
H81 H81
H71 H71
H61 H61
H51 H51
H41 H41
HN1 HN1
HA2 HA2
HB2 HB2
HB2A HB2A
HG2 HG2
HG2A HG2A
HOZ2 HOZ2
HN3 HN3
HA3 HA3
HB3 HB3
HZ1 HZ1
HZ1A HZ1A
HZ1B HZ1B
HZ2 HZ2
HZ2A HZ2A
HZ2B HZ2B
HN4 HN4
HO7 HO7
HO9 HO9
H10 H10
H10A H10A
H12 H12
H12A H12A
H94 H94
H34 H34
H23 H23
H13 H13
H64 H64
H54 H54
H77 H77
H77A H77A
H14 H14
H14A H14A
HN6 HN6